UHGV-0020755 (vOTU-163838)

Viral Genome: UHGV-0020755

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0020755
vOTU ID	vOTU-163838
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_12_1851__NODE_1426_length_25639_cov_7.132853
Associated BioSample	SAMEA4766073
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.66 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.56
Jumbo phage	No

Genome content
Genome length (bp)	25,639
GC content	40.97%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	31
CDS density	91%
Average CDS length (bps)	755.61
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0020755_1	UniRef90_R6NQM1	63.5	0.000000011	Putative TnpX site-specific recombinase	N/A
eggNOG-mapper	UHGV-0020755_1	478749.BRYFOR_07651	182.0	0	N/A	N/A
structural_annotation	UHGV-0020755_1	TIGR03826	N/A	N/A	N/A	N/A
KOfam	UHGV-0020755_2	K19117	94.9	8.6e-28	csd1, cas8c; CRISPR-associated protein Csd1	N/A
UniRef90	UHGV-0020755_2	UniRef90_UPI001570630B	264.0	0	type I-C CRISPR-associated protein Cas8c/Csd1	N/A
eggNOG-mapper	UHGV-0020755_2	679201.HMPREF9334_02143	88.2	8.51e-17	CRISPR-associated protein, Csd1 family	N/A
PADLOC	UHGV-0020755_2	cd09757	111.1	1.7e-32	CAS-I-C; effector_LS	CRISPR-CAS
Pfam	UHGV-0020755_2	PF09709	N/A	N/A	CRISPR-associated protein (Cas_Csd1)	Cas_Csd1
COG	UHGV-0020755_2	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0020755_2	PF09709,TIGR01863	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0020755_3	cluster_11486	65.9	1.47e-16	NA	N/A
KOfam	UHGV-0020755_4	K07273	186.7	0	acm; lysozyme	N/A
PHROG	UHGV-0020755_4	phrog_291	141.3	7.90052e-42	endolysin	lysis
UniRef90	UHGV-0020755_4	UniRef90_A0A564SYY2	681.0	0	Glycosyl hydrolases family 25	N/A
eggNOG-mapper	UHGV-0020755_4	515620.EUBELI_01316	205.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0020755_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0020755_4	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0020755_4	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020755_5	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-0020755_6	phrog_18218	134.9	2.29999e-40	N/A	unknown function
UniRef90	UHGV-0020755_6	UniRef90_A0A373SUI3	194.0	0	Ribonuclease	N/A
eggNOG-mapper	UHGV-0020755_6	658655.HMPREF0988_02546	155.0	0	N/A	N/A
structural_annotation	UHGV-0020755_6	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0020755_7	phrog_1863	58.3	2.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0020755_7	1226322.HMPREF1545_04027	68.9	0.0000000000000223	N/A	N/A
eggNOG-mapper	UHGV-0020755_9	357276.EL88_11200	215.0	0	lipolytic protein G-D-S-L family	N/A
COG	UHGV-0020755_9	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-0020755_10	phrog_11037	135.5	5.30001e-40	N/A	unknown function
UniRef90	UHGV-0020755_10	UniRef90_A0A1Q6K9M8	667.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0020755_10	33035.JPJF01000093_gene2240	310.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0020755_10	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0020755_10	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0020755_10	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0020755_10	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0020755_11	phrog_13289	437.2	0	tail protein	tail
UniRef90	UHGV-0020755_11	UniRef90_D4M5A0	1145.0	0	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0020755_11	1235798.C817_02568	478.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0020755_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0020755_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0020755_11	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0020755_11	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0020755_12	phrog_33	62.5	1.1e-17	distal tail protein Dit	tail
UniRef90	UHGV-0020755_12	UniRef90_UPI000E50043B	486.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0020755_12	1232452.BAIB02000007_gene1615	223.0	0	phage tail	N/A
COG	UHGV-0020755_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0020755_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0020755_13	phrog_1272	214.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0020755_13	UniRef90_A0A373N7M8	1114.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0020755_13	1035184.HMPREF1042_1328	304.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0020755_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0020755_13	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0020755_13	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0020755_15	phrog_88	100.6	1.6e-29	major tail protein	tail
UniRef90	UHGV-0020755_15	UniRef90_D4M596	378.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-0020755_15	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0020755_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0020755_15	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0020755_16	phrog_5	48.5	0.00000000000022	tail completion or Neck1 protein	connector
UniRef90	UHGV-0020755_16	UniRef90_D4M595	240.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0020755_16	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0020755_16	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020755_17	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020755_18	UniRef90_D4M593	243.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
structural_annotation	UHGV-0020755_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0020755_19	phrog_749	40.5	0.000000000045	N/A	unknown function
PHROG	UHGV-0020755_20	phrog_10	89.7	2.8e-26	major head protein	head and packaging
UniRef90	UHGV-0020755_20	UniRef90_D4M591	728.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0020755_20	1232452.BAIB02000007_gene1625	471.0	0	Phage capsid family	N/A
Pfam	UHGV-0020755_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0020755_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0020755_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0020755_20	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0020755_21	K01358	114.2	1.6e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0020755_21	phrog_94	179.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0020755_21	UniRef90_D4M590	500.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0020755_21	1235792.C808_00085	208.0	0	Clp protease	N/A
Pfam	UHGV-0020755_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0020755_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0020755_21	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0020755_22	phrog_12	69.0	4.2e-20	portal protein	head and packaging
UniRef90	UHGV-0020755_22	UniRef90_UPI00156D5DC9	593.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0020755_22	1232452.BAIB02000007_gene1627	283.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0020755_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0020755_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0020755_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0020755_23	phrog_9	254.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0020755_23	UniRef90_D4M588	1128.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0020755_23	1232452.BAIB02000007_gene1629	532.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0020755_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0020755_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0020755_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0020755_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0020755_24	phrog_5110	102.3	2.6e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0020755_24	UniRef90_A0A1C5LZF0	104.0	1.05e-26	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0020755_24	1211817.CCAT010000008_gene938	81.6	5.02e-18	Phage terminase, small subunit	N/A
Pfam	UHGV-0020755_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0020755_24	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020755_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0020755_25	K07451	51.2	0.000000000000025	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0020755_25	phrog_119	82.3	6.2e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020755_25	UniRef90_D4M587	276.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0020755_25	1232452.BAIB02000007_gene1631	94.0	5.44e-23	HNH nucleases	N/A
Pfam	UHGV-0020755_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0020755_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0020755_25	PF09889,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-0020755_26	phrog_36	66.6	4.6e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0020755_26	UniRef90_UPI000E49B095	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-0020755_26	658655.HMPREF0988_02569	152.0	0	sigma factor activity	N/A
Pfam	UHGV-0020755_26	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0020755_26	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0020755_26	PF07374,MF_00674,TIGR02984,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0020755_31	phrog_7566	116.5	8.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-0020755_31	97139.C824_00037	161.0	0	N/A	N/A