UHGV-0021363 (vOTU-163697)

Viral Genome: UHGV-0021363

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0021363
vOTU ID	vOTU-163697
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_C_4_1831__NODE_1917_length_40602_cov_19.817397
Associated BioSample	SAMEA4766064
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.12 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9794
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.55
Jumbo phage	No

Genome content
Genome length (bp)	40,602
GC content	39.76%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	95%
Average CDS length (bps)	610.86
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0021363_1	397290.C810_01402	57.4	0.000000000958	N/A	N/A
PHROG	UHGV-0021363_2	phrog_1048	124.9	9.3e-38	N/A	unknown function
UniRef90	UHGV-0021363_2	UniRef90_A0A352P8A0	277.0	0	N/A	N/A
eggNOG-mapper	UHGV-0021363_2	457412.RSAG_01107	211.0	0	N/A	N/A
Pfam	UHGV-0021363_2	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0021363_2	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0021363_2	PF11195	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021363_4	1232453.BAIF02000058_gene1630	124.0	1.31e-34	N/A	N/A
structural_annotation	UHGV-0021363_4	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021363_5	1232453.BAIF02000058_gene1631	223.0	0	N/A	N/A
AcrCatalog	UHGV-0021363_5	cluster_24841	185.0	0	NA	N/A
structural_annotation	UHGV-0021363_6	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021363_7	476272.RUMHYD_01968	113.0	1.01e-29	N/A	N/A
structural_annotation	UHGV-0021363_7	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0021363_8	phrog_36112	46.8	0.00000000000036	N/A	unknown function
eggNOG-mapper	UHGV-0021363_8	1298920.KI911353_gene2651	78.6	4.96e-16	N/A	N/A
structural_annotation	UHGV-0021363_8	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0021363_10	phrog_28918	215.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0021363_10	1298920.KI911353_gene2649	424.0	0	tape measure	N/A
COG	UHGV-0021363_10	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0021363_11	phrog_1194	83.6	1.8e-24	N/A	unknown function
UniRef90	UHGV-0021363_11	UniRef90_A0A0V8EA29	55.5	0.000000253	N/A	N/A
eggNOG-mapper	UHGV-0021363_11	1121866.AUGK01000003_gene1438	105.0	1.37e-27	N/A	N/A
Pfam	UHGV-0021363_11	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0021363_11	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0021363_12	phrog_6616	420.4	0	tail protein	tail
UniRef90	UHGV-0021363_12	UniRef90_A0A412RR71	362.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0021363_12	1121866.AUGK01000003_gene1439	317.0	0	Phage minor structural protein	N/A
COG	UHGV-0021363_12	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0021363_12	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021363_13	1121866.AUGK01000003_gene1445	67.0	0.000000000121	N/A	N/A
PHROG	UHGV-0021363_14	phrog_32779	41.6	0.0000000000099	N/A	unknown function
COG	UHGV-0021363_14	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-0021363_15	PF14282	N/A	N/A	N/A	N/A
PHROG	UHGV-0021363_17	phrog_199	75.0	7.7e-22	holin	lysis
UniRef90	UHGV-0021363_17	UniRef90_A0A174GVG0	223.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0021363_17	411461.DORFOR_01186	189.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0021363_17	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0021363_17	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0021363_17	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0021363_17	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0021363_18	K01447	66.5	4.3e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0021363_18	phrog_670	100.6	1.8e-29	endolysin	lysis
UniRef90	UHGV-0021363_18	UniRef90_UPI000D6559B0	159.0	8.7399e-42	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0021363_18	1226322.HMPREF1545_00070	156.0	2.47049e-42	Ami_2	N/A
Pfam	UHGV-0021363_18	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0021363_18	PF21540	N/A	N/A	Choline-binding repeat	Choline_bind_4
COG	UHGV-0021363_18	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
PHROG	UHGV-0021363_20	phrog_8	48.7	0.000000000000093	transcriptional regulator	transcription regulation
UniRef90	UHGV-0021363_20	UniRef90_A0A1Q9J746	209.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0021363_20	1536772.R70723_06535	61.6	0.00000000251	addiction module antidote protein HigA	N/A
Pfam	UHGV-0021363_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0021363_20	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0021363_20	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021363_21	UniRef90_UPI0015934173	61.6	0.0000000000388	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0021363_21	693746.OBV_43290	49.7	0.0000016	addiction module antidote protein HigA	N/A
Pfam	UHGV-0021363_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0021363_21	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0021363_21	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0021363_22	phrog_463	198.3	0	anti-repressor	transcription regulation
UniRef90	UHGV-0021363_22	UniRef90_UPI001C02AC2E	256.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0021363_22	411490.ANACAC_00813	213.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0021363_22	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0021363_22	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0021363_22	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0021363_22	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0021363_25	K07699	55.5	8.3e-16	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
UniRef90	UHGV-0021363_25	UniRef90_A0A1Q6KA48	70.5	0.000000000000449	Spo0A_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0021363_25	1163671.JAGI01000003_gene798	52.0	0.00000456	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	N/A
Pfam	UHGV-0021363_25	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-0021363_25	COG2201	N/A	N/A	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	N/A
structural_annotation	UHGV-0021363_25	PF08769,TIGR02875	N/A	N/A	N/A	N/A
KOfam	UHGV-0021363_28	K03111	44.6	0.0000000000011	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0021363_28	phrog_26861	85.7	4.2e-25	N/A	unknown function
UniRef90	UHGV-0021363_28	UniRef90_A0A1Q6KA67	165.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0021363_28	1235802.C823_04125	161.0	0	N/A	N/A
Pfam	UHGV-0021363_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0021363_28	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0021363_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
KOfam	UHGV-0021363_29	K19171	55.0	2.9e-16	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0021363_29	phrog_77	168.0	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021363_29	UniRef90_A0A174JMG0	399.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0021363_29	1232453.BAIF02000057_gene1134	410.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0021363_29	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0021363_29	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021363_30	1232453.BAIF02000057_gene1135	68.2	0.00000000000131	N/A	N/A
PHROG	UHGV-0021363_31	phrog_2185	336.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021363_31	UniRef90_UPI00157154DF	508.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0021363_31	1232453.BAIF02000057_gene1136	474.0	0	N/A	N/A
structural_annotation	UHGV-0021363_31	NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0021363_32	phrog_25456	80.2	2.2e-24	N/A	unknown function
UniRef90	UHGV-0021363_33	UniRef90_R7JZ94	420.0	0	Excinuclease ABC C subunit domain protein	N/A
eggNOG-mapper	UHGV-0021363_33	573061.Clocel_3554	229.0	0	GIY-YIG catalytic domain	N/A
structural_annotation	UHGV-0021363_33	PF19835,PF06467,MF_00773,TIGR01453,COG2075	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021363_34	UniRef90_A0A2U3LH19	47.4	0.00000857	Metallo-beta-lactamase domain protein	N/A
eggNOG-mapper	UHGV-0021363_34	658655.HMPREF0988_00883	75.9	7.48e-18	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
COG	UHGV-0021363_34	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
KOfam	UHGV-0021363_35	K06167	48.6	0.00000000000011	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0021363_35	phrog_392	141.6	6.39973e-42	metal-dependent hydrolase	other
UniRef90	UHGV-0021363_35	UniRef90_A0A173REW9	319.0	0	Beta-lactamase superfamily domain	N/A
eggNOG-mapper	UHGV-0021363_35	658655.HMPREF0988_00882	157.0	0	Metallo-beta-lactamase superfamily	N/A
COG	UHGV-0021363_35	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0021363_35	PF02112,MF_00457,NF041851,COG2220	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021363_36	PF09629,NF002745	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021363_37	536232.CLM_1636	105.0	6.14e-26	N/A	N/A
structural_annotation	UHGV-0021363_37	PF17457	N/A	N/A	N/A	N/A
KOfam	UHGV-0021363_38	K03111	130.9	1.4e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0021363_38	phrog_44	135.7	3.09999e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021363_38	UniRef90_A0A6L5YP05	218.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0021363_38	585394.RHOM_16640	220.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0021363_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0021363_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0021363_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0021363_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0021363_38	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0021363_41	phrog_19106	339.0	0	N/A	unknown function
UniRef90	UHGV-0021363_41	UniRef90_R7BHG7	282.0	0	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-0021363_41	658655.HMPREF0988_00875	279.0	0	N/A	N/A
structural_annotation	UHGV-0021363_41	TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0021363_43	phrog_8489	171.9	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021363_43	UniRef90_UPI000AF81D4B	124.0	3.68e-30	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0021363_43	1541960.KQ78_02108	120.0	3.98e-30	N/A	N/A
COG	UHGV-0021363_43	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0021363_43	TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0021363_44	K02314	295.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0021363_44	phrog_19	276.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021363_44	UniRef90_A0A1Q9J827	617.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0021363_44	1298920.KI911353_gene2061	367.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0021363_44	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0021363_44	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0021363_44	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0021363_44	PF03796,MF_04154,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0021363_49	phrog_21026	56.8	3.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0021363_50	397288.C806_00101	55.5	0.00000000158	N/A	N/A
eggNOG-mapper	UHGV-0021363_51	97139.C824_00134	52.4	0.000000477	N/A	N/A
Pfam	UHGV-0021363_52	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0021363_52	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0021363_53	phrog_20593	57.8	1.4e-16	N/A	unknown function
structural_annotation	UHGV-0021363_54	PF06442,MF_01194,NF000331,COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0021363_55	phrog_874	169.3	0	N/A	unknown function
UniRef90	UHGV-0021363_55	UniRef90_UPI0018F57B3A	246.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0021363_55	411468.CLOSCI_00298	189.0	0	N/A	N/A
KOfam	UHGV-0021363_56	K14440	50.8	3.1e-23	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0021363_56	phrog_16	201.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021363_56	UniRef90_A0A3R6MX70	830.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0021363_56	411473.RUMCAL_00274	629.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0021363_56	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0021363_56	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0021363_56	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0021363_56	PF18766,PF16203,MF_01821,TIGR04095,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-0021363_57	K24451	130.1	1.6e-38	zim; modification methylase	N/A
PHROG	UHGV-0021363_57	phrog_67	118.3	4.5e-35	DNA methyltransferase	other
UniRef90	UHGV-0021363_57	UniRef90_A0A3R6Q0Y1	538.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0021363_57	411473.RUMCAL_00273	470.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0021363_57	MTase_II_00139	108.9	8.3e-32	Type II methyltransferase	RM
Pfam	UHGV-0021363_57	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0021363_57	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0021363_57	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0021363_58	K00558	229.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0021363_58	phrog_116	269.0	0	DNA methyltransferase	other
UniRef90	UHGV-0021363_58	UniRef90_A0A174GZ53	1000.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0021363_58	1235800.C819_02255	730.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0021363_58	MTase_II_00020	111.0	1.2e-36	Type II methyltransferase	RM
Pfam	UHGV-0021363_58	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0021363_58	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0021363_58	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0021363_59	K04763	154.7	1.4013e-45	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0021363_59	phrog_1	133.6	1.9e-39	integrase	integration and excision
UniRef90	UHGV-0021363_59	UniRef90_UPI001C034698	371.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0021363_59	1158601.I585_00716	114.0	2.18e-26	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0021363_59	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0021363_59	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0021363_59	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0021363_59	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0021363_61	phrog_2999	41.9	0.000000000023	N/A	unknown function
UniRef90	UHGV-0021363_61	UniRef90_UPI001D0694DF	80.9	2.84e-16	N/A	N/A
eggNOG-mapper	UHGV-0021363_61	658655.HMPREF0988_00863	70.9	0.000000000000396	N/A	N/A
PHROG	UHGV-0021363_63	phrog_8684	84.0	1.1e-24	N/A	unknown function
UniRef90	UHGV-0021363_63	UniRef90_A0A173RDP8	172.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-0021363_63	742733.HMPREF9469_00912	75.5	4.86e-16	YopX protein	N/A
Pfam	UHGV-0021363_63	PF09643	N/A	N/A	YopX protein	YopX