UHGV-0021610 (vOTU-075117)

Viral Genome: UHGV-0021610

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0021610
vOTU ID	vOTU-075117
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_21_1706__NODE_1847_length_36758_cov_5.573076
Associated BioSample	SAMEA4765986
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.34 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.978
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.99
Jumbo phage	No

Genome content
Genome length (bp)	36,758
GC content	41.76%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	91%
Average CDS length (bps)	533.14
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0021610_1	K14059	220.5	0	int; integrase	N/A
PHROG	UHGV-0021610_1	phrog_1	198.0	0	integrase	integration and excision
UniRef90	UHGV-0021610_1	UniRef90_A0A847CB94	259.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0021610_1	1238184.CM001792_gene2557	145.0	2.25e-37	Arm DNA-binding domain	N/A
Pfam	UHGV-0021610_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0021610_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0021610_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0021610_1	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_2	phrog_7115	126.7	9.1e-38	N/A	unknown function
UniRef90	UHGV-0021610_2	UniRef90_V6T0G9	171.0	0	bPH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0021610_2	1294265.JCM21738_2387	171.0	0	Bacterial PH domain	N/A
Pfam	UHGV-0021610_2	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-0021610_2	PF08000,MF_00437	N/A	N/A	N/A	N/A
KOfam	UHGV-0021610_3	K22300	43.3	0.0000000000066	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
Pfam	UHGV-0021610_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0021610_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0021610_5	phrog_8	41.2	2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0021610_5	UniRef90_UPI000C7A7EF1	60.1	0.0000000365	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0021610_5	1226322.HMPREF1545_00148	60.8	0.00000000193	Transcriptional	N/A
Pfam	UHGV-0021610_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0021610_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0021610_5	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
Pfam	UHGV-0021610_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0021610_16	phrog_674	133.3	1.7e-39	N/A	unknown function
eggNOG-mapper	UHGV-0021610_16	665956.HMPREF1032_03103	87.8	3.59e-17	N/A	N/A
Pfam	UHGV-0021610_16	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0021610_16	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0021610_17	K07455	178.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0021610_17	phrog_148	203.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021610_17	UniRef90_A0A355KWE4	332.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0021610_17	428127.EUBDOL_01509	316.0	0	RecT family	N/A
Pfam	UHGV-0021610_17	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0021610_17	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0021610_17	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0021610_17	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0021610_18	K06167	48.0	0.00000000000012	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0021610_18	phrog_392	125.3	5.7e-37	metal-dependent hydrolase	other
UniRef90	UHGV-0021610_18	UniRef90_UPI000990493D	269.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0021610_18	665956.HMPREF1032_03101	217.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0021610_18	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0021610_18	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0021610_18	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_19	phrog_19415	53.5	1.8e-16	N/A	unknown function
UniRef90	UHGV-0021610_19	UniRef90_A0A357YIF0	55.5	0.00000915	N/A	N/A
eggNOG-mapper	UHGV-0021610_19	565664.EFXG_01145	64.7	0.00000000277	Helix-turn-helix domain	N/A
Pfam	UHGV-0021610_19	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0021610_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0021610_19	PF19808	N/A	N/A	N/A	N/A
Pfam	UHGV-0021610_20	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
PHROG	UHGV-0021610_31	phrog_2245	75.1	8.8e-22	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0021610_31	UniRef90_A0A1C5STJ7	54.7	0.00000106	MazG domain-containing protein	N/A
COG	UHGV-0021610_32	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
KOfam	UHGV-0021610_33	K17398	132.3	3.4e-39	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	N/A
PHROG	UHGV-0021610_33	phrog_17284	183.7	0	N/A	unknown function
UniRef90	UHGV-0021610_33	UniRef90_A0A1Q6RQI3	376.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0021610_33	1341157.RF007C_03290	273.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0021610_33	MTase_II_00058	100.1	2.5e-30	Type II methyltransferase	RM
Pfam	UHGV-0021610_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0021610_33	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0021610_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0021610_33	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0021610_35	K01160	53.6	0.0000000000000052	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0021610_35	phrog_1682	60.7	2e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021610_35	UniRef90_A0A2U2EKN8	98.2	1.31e-23	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0021610_35	1235790.C805_00029	90.5	2.16e-21	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0021610_35	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
KOfam	UHGV-0021610_36	K00571	119.2	3e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0021610_36	phrog_498	341.4	0	DNA methyltransferase	other
UniRef90	UHGV-0021610_36	UniRef90_UPI000B9881A1	534.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0021610_36	1122173.AXVL01000045_gene2105	462.0	0	ParB-like nuclease domain	N/A
PADLOC	UHGV-0021610_36	MTase_II_00015	144.5	0	Type II methyltransferase	RM
Pfam	UHGV-0021610_36	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0021610_36	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0021610_36	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0021610_36	PF02195,PF01555,MF_02015,MF_00786,TIGR00180,NF008572,COG1475,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_37	phrog_2412	59.8	3.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0021610_37	665942.HMPREF1022_00986	58.9	0.00000000218	N/A	N/A
Pfam	UHGV-0021610_37	PF18932	N/A	N/A	N/A	DUF5681
PHROG	UHGV-0021610_38	phrog_38	159.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0021610_38	UniRef90_D2J053	448.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0021610_38	1140001.I571_01829	461.0	0	N/A	N/A
Pfam	UHGV-0021610_38	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
structural_annotation	UHGV-0021610_38	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_39	phrog_64	151.8	2.8026e-45	portal protein	head and packaging
UniRef90	UHGV-0021610_39	UniRef90_UPI0018A8A301	431.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0021610_39	673376.F2VHW1_9CAUD	218.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0021610_39	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0021610_39	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_40	phrog_595	112.1	6.9e-33	head maturation protease	head and packaging
UniRef90	UHGV-0021610_40	UniRef90_A0A3D2MUF2	182.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0021610_40	441769.ABFU01000059_gene361	65.5	0.00000000216	cell adhesion	N/A
Pfam	UHGV-0021610_40	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0021610_40	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021610_40	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_41	phrog_5	48.7	0.00000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-0021610_41	UniRef90_A0A6H1MR47	85.9	1.64e-18	Putative tail component	N/A
Pfam	UHGV-0021610_41	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0021610_41	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_42	phrog_194	44.1	0.0000000000035	head scaffolding protein	head and packaging
UniRef90	UHGV-0021610_42	UniRef90_A0A6B9SU02	107.0	1.01e-25	Fibronectin autolysin	N/A
structural_annotation	UHGV-0021610_42	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_43	phrog_544	113.4	2e-33	major head protein	head and packaging
UniRef90	UHGV-0021610_43	UniRef90_A0A1C6B5R0	342.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0021610_43	476272.RUMHYD_01776	290.0	0	N/A	N/A
structural_annotation	UHGV-0021610_43	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_45	phrog_17977	76.2	2.9e-22	N/A	unknown function
UniRef90	UHGV-0021610_45	UniRef90_UPI00141211AB	120.0	3.55e-33	head-tail adaptor protein	N/A
structural_annotation	UHGV-0021610_45	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_46	phrog_17405	57.4	2e-16	head protein	head and packaging
structural_annotation	UHGV-0021610_46	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_47	phrog_885	99.2	3.5e-29	major tail protein	tail
UniRef90	UHGV-0021610_47	UniRef90_A0A843J9F0	207.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0021610_47	1504822.CCNO01000012_gene492	228.0	0	N/A	N/A
structural_annotation	UHGV-0021610_47	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_49	phrog_6900	150.2	1.68156e-44	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0021610_49	1111121.HMPREF1247_0787	239.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0021610_49	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0021610_49	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_50	phrog_33	70.8	2.7e-20	distal tail protein Dit	tail
UniRef90	UHGV-0021610_50	UniRef90_A0A564T4N7	133.0	1.28e-33	Phage tail protein	N/A
eggNOG-mapper	UHGV-0021610_50	755731.Clo1100_0556	90.1	3.12e-18	Phage tail protein	N/A
Pfam	UHGV-0021610_50	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0021610_50	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0021610_50	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_51	phrog_538	167.2	0	minor tail protein	tail
UniRef90	UHGV-0021610_51	UniRef90_A0A1C5PP83	117.0	6.24e-25	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0021610_51	1410624.JNKK01000017_gene1989	97.1	1.18e-18	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0021610_51	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
COG	UHGV-0021610_51	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0021610_51	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0021610_52	phrog_9534	159.8	0	head protein	head and packaging
eggNOG-mapper	UHGV-0021610_52	665956.HMPREF1032_02939	105.0	1.28e-24	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0021610_53	PF21253,NF038128,COG5156	N/A	N/A	N/A	N/A
KOfam	UHGV-0021610_54	K07273	86.7	3.1e-25	acm; lysozyme	N/A
PHROG	UHGV-0021610_54	phrog_291	72.7	5.8e-21	endolysin	lysis
UniRef90	UHGV-0021610_54	UniRef90_A0A6B9SS82	78.2	0.000000000000949	Lysozyme	N/A
Pfam	UHGV-0021610_54	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0021610_54	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
PHROG	UHGV-0021610_55	phrog_1863	49.5	0.000000000000044	N/A	unknown function
eggNOG-mapper	UHGV-0021610_55	66692.ABC2817	60.1	0.000000000133	N/A	N/A
PHROG	UHGV-0021610_59	phrog_16490	84.9	2.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0021610_59	1408437.JNJN01000043_gene803	112.0	1.13e-27	N/A	N/A
PHROG	UHGV-0021610_60	phrog_20016	192.9	0	N/A	unknown function
UniRef90	UHGV-0021610_60	UniRef90_A0A345BPX4	172.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0021610_60	1226322.HMPREF1545_00077	170.0	0	N/A	N/A
structural_annotation	UHGV-0021610_60	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021610_61	PF12510	N/A	N/A	N/A	N/A
COG	UHGV-0021610_63	COG0396	N/A	N/A	Fe-S cluster assembly ATPase SufC	N/A