UHGV-0022584 (vOTU-137643)

Viral Genome: UHGV-0022584

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0022584
vOTU ID	vOTU-137643
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_3_2141__NODE_4849_length_19690_cov_3.456330
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.43 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.63
Jumbo phage	No

Genome content
Genome length (bp)	19,690
GC content	39.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	31
CDS density	95%
Average CDS length (bps)	602.81
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0022584_1	K01358	87.4	2.5e-25	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0022584_1	phrog_94	166.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0022584_1	UniRef90_A0A1Q6M1U6	199.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0022584_1	536232.CLM_2932	157.0	7.00649e-45	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0022584_1	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0022584_1	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0022584_1	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_2	phrog_10	186.7	0	major head protein	head and packaging
UniRef90	UHGV-0022584_2	UniRef90_A0A168E1E5	342.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0022584_2	1304866.K413DRAFT_1225	327.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0022584_2	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0022584_2	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0022584_2	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0022584_2	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_3	phrog_40	48.3	0.00000000000014	head-tail adaptor Ad1	connector
UniRef90	UHGV-0022584_3	UniRef90_A0A6P1MNU9	107.0	1.59e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0022584_3	508419.F8J164_9CAUD	109.0	4.89e-30	N/A	N/A
NCBIFam	UHGV-0022584_3	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0022584_3	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_4	phrog_25	58.7	1e-16	head closure Hc1	connector
UniRef90	UHGV-0022584_4	UniRef90_A0A843I196	147.0	7.28675e-44	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0022584_4	508419.F8J165_9CAUD	128.0	4.26e-37	Phage head-tail joining protein	N/A
Pfam	UHGV-0022584_4	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0022584_4	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0022584_4	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022584_5	UniRef90_A0A843HUI9	114.0	7.36e-30	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0022584_5	508419.F8J166_9CAUD	166.0	0	N/A	N/A
structural_annotation	UHGV-0022584_5	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_6	phrog_78	52.7	0.000000000000009	tail terminator	connector
UniRef90	UHGV-0022584_6	UniRef90_UPI0003697F12	74.7	0.00000000000000456	N/A	N/A
eggNOG-mapper	UHGV-0022584_6	508419.F8J167_9CAUD	126.0	4.38e-36	N/A	N/A
structural_annotation	UHGV-0022584_6	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_7	phrog_88	103.8	1.6e-30	major tail protein	tail
UniRef90	UHGV-0022584_7	UniRef90_A0A075KJR8	261.0	0	Putative major tail protein	N/A
eggNOG-mapper	UHGV-0022584_7	1399942.U3PBH4_9CAUD	261.0	0	N/A	N/A
NCBIFam	UHGV-0022584_7	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0022584_7	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_8	phrog_2115	59.9	5.4e-17	tail protein	tail
eggNOG-mapper	UHGV-0022584_8	508419.F8J169_9CAUD	150.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0022584_8	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_9	phrog_9959	145.7	2.94273e-44	tail length tape measure protein	tail
UniRef90	UHGV-0022584_9	UniRef90_A0A1V4IXS0	176.0	2.93992e-42	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0022584_9	411470.RUMGNA_02228	261.0	0	tape measure	N/A
Pfam	UHGV-0022584_9	PF20155	N/A	N/A	Tape measure protein	TMP_3
COG	UHGV-0022584_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0022584_10	phrog_33	66.1	9.2e-19	distal tail protein Dit	tail
UniRef90	UHGV-0022584_10	UniRef90_A0A075KJA3	278.0	0	Putative tail component	N/A
eggNOG-mapper	UHGV-0022584_10	1399942.U3PIW9_9CAUD	282.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0022584_10	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_11	phrog_1084	47.7	0.00000000000026	N/A	unknown function
eggNOG-mapper	UHGV-0022584_11	1399942.U3PDS7_9CAUD	124.0	2.78e-35	N/A	N/A
structural_annotation	UHGV-0022584_11	PF08481,NF032891,COG5456	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022584_13	910314.HMPREF9220_1078	52.8	0.000000273	N/A	N/A
structural_annotation	UHGV-0022584_13	PF08481,NF032891,COG5456	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022584_16	657322.FPR_21920	69.7	0.0000000000233	N/A	N/A
COG	UHGV-0022584_16	COG5563	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_17	phrog_24267	97.9	1.3e-28	N/A	unknown function
UniRef90	UHGV-0022584_17	UniRef90_A0A679FNR6	77.8	0.0000000000000321	Putative structural protein	N/A
eggNOG-mapper	UHGV-0022584_17	1123302.KB904167_gene530	104.0	7.55e-24	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0022584_17	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0022584_17	COG4675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022584_18	PF10618	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0022584_19	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0022584_19	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_20	phrog_1067	350.7	0	minor head protein	head and packaging
UniRef90	UHGV-0022584_20	UniRef90_A0A2P1CCB3	580.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0022584_20	1399942.U3PFX4_9CAUD	575.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0022584_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0022584_20	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0022584_20	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_21	phrog_372	286.0	0	tail protein	tail
UniRef90	UHGV-0022584_21	UniRef90_A0A4D6B7C6	177.0	4.2039e-45	Capsid and scaffold protein	N/A
eggNOG-mapper	UHGV-0022584_21	1123315.AUIP01000001_gene1436	177.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0022584_21	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0022584_21	PF05895,MF_04116,NF010681,COG3401	N/A	N/A	N/A	N/A
KOfam	UHGV-0022584_22	K06400	308.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0022584_22	phrog_95	332.2	0	integrase	integration and excision
UniRef90	UHGV-0022584_22	UniRef90_UPI0007748959	251.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0022584_22	411461.DORFOR_00037	228.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0022584_22	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0022584_22	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0022584_22	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0022584_22	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0022584_22	PF07508,PF00239,PF18822,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0022584_23	K14056	65.3	1e-18	puuR; HTH-type transcriptional regulator, repressor for puuD	N/A
PHROG	UHGV-0022584_23	phrog_1373	53.3	0.0000000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022584_23	UniRef90_R6AML4	83.2	2.21e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0022584_23	272562.CA_C1559	60.5	0.000000000315	sequence-specific DNA binding	N/A
PADLOC	UHGV-0022584_23	retron_type_VI_hth_cluster2_1	60.2	5.4e-17	N/A	Retron
Pfam	UHGV-0022584_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022584_23	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0022584_23	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0022584_24	K07729	47.3	0.00000000000043	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0022584_24	phrog_3	40.8	0.000000000086	transcriptional repressor	transcription regulation
UniRef90	UHGV-0022584_24	UniRef90_UPI00195F9AA7	54.7	0.0000000186	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0022584_24	1122915.AUGY01000087_gene5242	49.7	0.000000317	transcriptional	N/A
PADLOC	UHGV-0022584_24	retron_type_VI_hth_cluster2_1	41.6	0.000000000041	N/A	Retron
Pfam	UHGV-0022584_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022584_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022584_24	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_26	phrog_2324	90.5	1.3e-26	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022584_26	UniRef90_A0A366DNY1	70.1	0.0000000000296	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0022584_26	1399942.U3PCT3_9CAUD	67.8	0.0000000000327	N/A	N/A
Pfam	UHGV-0022584_26	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0022584_26	PF04404	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022584_27	PF19157	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_28	phrog_6244	108.2	7e-32	N/A	unknown function
UniRef90	UHGV-0022584_28	UniRef90_A0A7W3SYY9	53.9	0.000000337	Putative phage-related endonuclease	N/A
eggNOG-mapper	UHGV-0022584_28	1399942.U3PIX9_9CAUD	84.3	7.62e-20	N/A	N/A
structural_annotation	UHGV-0022584_28	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0022584_29	phrog_298	73.4	1.9e-21	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022584_29	UniRef90_A0A843HPP6	159.0	1.4013e-45	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-0022584_29	1399942.U3PDT7_9CAUD	215.0	0	nuclease activity	N/A
structural_annotation	UHGV-0022584_29	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022584_30	NF000090,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0022584_31	K03111	121.6	1e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0022584_31	phrog_44	134.1	9.5e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022584_31	UniRef90_A0A1U7NMX8	124.0	1.39e-33	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0022584_31	1235796.C815_00133	118.0	4.88e-32	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0022584_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0022584_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0022584_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0022584_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0022584_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A