UHGV-0022624 (vOTU-043382)

Viral Genome: UHGV-0022624

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0022624
vOTU ID	vOTU-043382
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_B_15_2660__NODE_1618_length_35053_cov_7.347524
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9808
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.75
Jumbo phage	No

Genome content
Genome length (bp)	35,012
GC content	56.09%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	93%
Average CDS length (bps)	651.42
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0022624_1	K07505	422.0	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0022624_1	phrog_2597	1175.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022624_1	UniRef90_A0A1E3C4V4	1026.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0022624_1	1232449.BAHV02000008_gene621	1003.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0022624_1	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0022624_1	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0022624_1	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0022624_1	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0022624_2	K17677	330.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0022624_2	phrog_16	263.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022624_2	UniRef90_B8I140	804.0	0	Type III restriction protein res subunit	N/A
eggNOG-mapper	UHGV-0022624_2	394503.Ccel_3307	804.0	0	helicase	N/A
PADLOC	UHGV-0022624_2	mREase_IV_00005	136.9	1.8e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0022624_2	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0022624_2	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0022624_2	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0022624_2	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_3	phrog_2698	183.6	0	N/A	unknown function
UniRef90	UHGV-0022624_3	UniRef90_A0A6G3M4N7	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022624_3	394503.Ccel_3308	157.0	0	N/A	N/A
structural_annotation	UHGV-0022624_3	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_4	phrog_124	234.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022624_4	UniRef90_A0A7C6K8G1	382.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0022624_4	999413.HMPREF1094_00235	382.0	0	AAA domain	N/A
Pfam	UHGV-0022624_4	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0022624_4	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0022624_5	K03546	73.5	2.6e-21	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0022624_5	phrog_1499	462.7	0	N/A	unknown function
UniRef90	UHGV-0022624_5	UniRef90_A0A3E0QS83	519.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0022624_5	645991.Sgly_0320	503.0	0	domain protein	N/A
Pfam	UHGV-0022624_5	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0022624_5	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0022624_5	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_6	phrog_3777	40.8	0.000000000022	N/A	unknown function
UniRef90	UHGV-0022624_6	UniRef90_UPI00166EB92C	71.2	0.0000000000000336	N/A	N/A
eggNOG-mapper	UHGV-0022624_6	767817.Desgi_3545	52.0	0.000000339	N/A	N/A
Pfam	UHGV-0022624_6	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0022624_6	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0022624_6	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_7	phrog_474	117.9	1.4e-34	phosphofructokinase	other
UniRef90	UHGV-0022624_7	UniRef90_A0A7V6W4J9	114.0	2.97e-30	N/A	N/A
eggNOG-mapper	UHGV-0022624_7	665956.HMPREF1032_00639	113.0	1.26e-30	N/A	N/A
Pfam	UHGV-0022624_7	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0022624_7	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_9	phrog_38832	48.8	0.000000000000029	N/A	unknown function
eggNOG-mapper	UHGV-0022624_9	665956.HMPREF1032_03087	52.4	0.000000522	N/A	N/A
PHROG	UHGV-0022624_10	phrog_111	154.9	0	DNA methyltransferase	other
UniRef90	UHGV-0022624_10	UniRef90_A0A1Y4EVK6	213.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0022624_10	1567011.A0A0A7RUD1_9VIRU	189.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0022624_10	oMTase_00015	171.9	0	orphan methyltransferase	RM
Pfam	UHGV-0022624_10	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
PHROG	UHGV-0022624_14	phrog_38679	67.0	2.5e-19	N/A	unknown function
UniRef90	UHGV-0022624_16	UniRef90_A0A2U1BEG8	101.0	1.04e-25	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0022624_16	445972.ANACOL_03315	92.4	6.25e-23	N/A	N/A
COG	UHGV-0022624_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0022624_18	K07729	63.1	6.3e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0022624_18	phrog_3	41.0	0.00000000007	transcriptional repressor	transcription regulation
UniRef90	UHGV-0022624_18	UniRef90_R5AVU4	93.2	9.67e-24	CI-like repressor	N/A
eggNOG-mapper	UHGV-0022624_18	608538.HTH_1322	59.7	0.00000000116	PBP superfamily domain	N/A
Pfam	UHGV-0022624_18	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0022624_18	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0022624_18	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0022624_19	K07448	131.7	5.3e-39	mrr; restriction system protein	N/A
PHROG	UHGV-0022624_19	phrog_19856	46.7	0.00000000000024	N/A	unknown function
UniRef90	UHGV-0022624_19	UniRef90_A0A1B2ERT1	100.0	3.99e-21	Mrr_cat domain-containing protein	N/A
eggNOG-mapper	UHGV-0022624_19	1235790.C805_00010	147.0	3.62999e-40	Restriction endonuclease	N/A
PADLOC	UHGV-0022624_19	ZorD1_00005	76.2	3.3e-22	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0022624_19	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0022624_19	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
structural_annotation	UHGV-0022624_19	PF04471,MF_00722,NF040854,COG1787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022624_20	PF21227	N/A	N/A	N/A	N/A
KOfam	UHGV-0022624_21	K06400	258.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0022624_21	phrog_95	252.0	0	integrase	integration and excision
UniRef90	UHGV-0022624_21	UniRef90_UPI0003130B23	291.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0022624_21	1235798.C817_01900	217.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0022624_21	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0022624_21	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0022624_21	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0022624_21	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022624_22	UniRef90_A0A4R1QMH6	86.3	8.61e-21	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0022624_22	445972.ANACOL_00210	102.0	7.86e-28	N/A	N/A
structural_annotation	UHGV-0022624_22	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_24	phrog_4068	80.6	2.1e-23	N/A	unknown function
structural_annotation	UHGV-0022624_24	PF06657	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_25	phrog_38679	72.6	4.5e-21	N/A	unknown function
PHROG	UHGV-0022624_26	phrog_199	64.7	1e-18	holin	lysis
UniRef90	UHGV-0022624_26	UniRef90_R5AT18	274.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0022624_26	1121344.JHZO01000003_gene684	148.0	1.16308e-43	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0022624_26	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0022624_26	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0022624_26	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0022624_26	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0022624_27	K01447	85.0	1.2e-24	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0022624_27	phrog_5182	165.9	0	endolysin	lysis
UniRef90	UHGV-0022624_27	UniRef90_R5AZE6	299.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0022624_27	397288.C806_00777	207.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0022624_27	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0022624_27	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0022624_27	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0022624_27	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_28	phrog_30034	110.2	2.4e-32	N/A	unknown function
UniRef90	UHGV-0022624_28	UniRef90_A0A3D1XGA4	219.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0022624_28	411471.SUBVAR_06976	92.8	1.06e-21	N/A	N/A
Pfam	UHGV-0022624_28	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
KOfam	UHGV-0022624_29	K24213	41.1	0.000000000019	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0022624_29	phrog_6320	53.6	0.0000000000000023	tail fiber protein	tail
Pfam	UHGV-0022624_29	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0022624_30	PF00629,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_32	phrog_6616	59.9	2.6e-18	tail protein	tail
structural_annotation	UHGV-0022624_32	PF13550,PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022624_33	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_34	phrog_1535	122.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0022624_34	UniRef90_A0A810PX76	96.7	4.65e-17	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0022624_34	1235797.C816_04182	184.0	0	SLT domain	N/A
COG	UHGV-0022624_34	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_35	phrog_706	108.9	4.5e-32	N/A	unknown function
UniRef90	UHGV-0022624_35	UniRef90_UPI00164D7633	180.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0022624_35	693746.OBV_18170	167.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0022624_35	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0022624_35	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_36	phrog_11299	99.9	2.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0022624_36	1449050.JNLE01000003_gene3883	66.2	0.0000000000104	N/A	N/A
structural_annotation	UHGV-0022624_36	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_37	phrog_3099	86.4	3.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0022624_37	693746.OBV_18150	221.0	0	N/A	N/A
structural_annotation	UHGV-0022624_37	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_38	phrog_3266	62.6	5.7e-18	tail completion	connector
eggNOG-mapper	UHGV-0022624_38	476272.RUMHYD_01781	117.0	2.18e-31	N/A	N/A
structural_annotation	UHGV-0022624_38	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_39	phrog_556	63.7	1.7e-18	minor head protein	head and packaging
UniRef90	UHGV-0022624_39	UniRef90_A0A1H7MNM8	135.0	1.23e-37	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0022624_39	33035.JPJF01000106_gene3128	82.0	1.21e-17	N/A	N/A
Pfam	UHGV-0022624_39	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0022624_39	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_40	phrog_3366	53.7	0.0000000000000039	N/A	unknown function
structural_annotation	UHGV-0022624_40	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_41	phrog_541	68.2	1.1e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0022624_41	476272.RUMHYD_01778	69.7	0.000000000000657	N/A	N/A
PHROG	UHGV-0022624_42	phrog_267	48.9	0.000000000000087	major head protein	head and packaging
eggNOG-mapper	UHGV-0022624_42	1235799.C818_04223	157.0	1.1911e-43	N/A	N/A
structural_annotation	UHGV-0022624_42	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_43	phrog_194	43.4	0.0000000000058	head scaffolding protein	head and packaging
UniRef90	UHGV-0022624_43	UniRef90_UPI001C0EBA51	125.0	1.34e-32	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0022624_43	1539298.JO41_08210	63.2	0.000000000913	Phage minor structural protein GP20	N/A
Pfam	UHGV-0022624_43	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0022624_43	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_44	phrog_581	245.6	0	minor head protein	head and packaging
UniRef90	UHGV-0022624_44	UniRef90_A0A355KVT5	339.0	0	Phage capsid protein (Fragment)	N/A
eggNOG-mapper	UHGV-0022624_44	476272.RUMHYD_01761	231.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0022624_44	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0022624_44	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022624_44	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_45	phrog_533	213.6	0	portal protein	head and packaging
UniRef90	UHGV-0022624_45	UniRef90_A0A173TY48	344.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0022624_45	33035.JPJF01000106_gene3135	326.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0022624_45	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_46	phrog_1233	92.5	5.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0022624_46	1232443.BAIA02000078_gene33	90.1	5.29e-22	N/A	N/A
structural_annotation	UHGV-0022624_46	PF13058	N/A	N/A	N/A	N/A
KOfam	UHGV-0022624_47	K06909	393.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0022624_47	phrog_5653	145.8	1.20512e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0022624_47	UniRef90_A0A416S378	635.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0022624_47	33035.JPJF01000106_gene3136	601.0	0	Terminase small subunit	N/A
Pfam	UHGV-0022624_47	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0022624_47	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0022624_47	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0022624_47	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0022624_47	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0022624_47	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0022624_48	phrog_36	51.3	0.000000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022624_48	UniRef90_UPI001D0837DD	121.0	1.35e-32	N/A	N/A
eggNOG-mapper	UHGV-0022624_48	580331.Thit_1400	75.9	0.00000000000000175	N/A	N/A
Pfam	UHGV-0022624_48	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0022624_48	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0022624_50	K01160	50.3	0.000000000000068	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0022624_50	phrog_140	86.4	3.9e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022624_50	UniRef90_R6ING7	157.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0022624_50	1262914.BN533_01944	157.0	0	crossover junction endodeoxyribonuclease	N/A
Pfam	UHGV-0022624_50	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0022624_50	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0022624_50	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A