UHGV-0022718 (vOTU-139545)

Viral Genome: UHGV-0022718

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0022718
vOTU ID	vOTU-139545
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_7_1773__NODE_5522_length_18302_cov_1120.129931
Associated BioSample	SAMEA4766032
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.16 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9772
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.86
Jumbo phage	No

Genome content
Genome length (bp)	18,302
GC content	50.10%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	93%
Average CDS length (bps)	436.92
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0022718_1	phrog_119	58.7	9e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022718_1	UniRef90_A0A2V2GQ57	127.0	2.58e-37	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0022718_1	1226322.HMPREF1545_00111	92.4	4.67e-24	HNH nucleases	N/A
Pfam	UHGV-0022718_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0022718_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0022718_2	phrog_7339	102.2	4e-30	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022718_2	UniRef90_A0A2V2GLL9	530.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0022718_2	1150474.JQJI01000006_gene784	94.4	1.29e-19	metallophosphoesterase	N/A
Pfam	UHGV-0022718_2	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0022718_2	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
PHROG	UHGV-0022718_3	phrog_36	45.3	0.0000000000015	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0022718_3	428125.CLOLEP_01806	79.7	7.35e-17	N/A	N/A
Pfam	UHGV-0022718_3	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0022718_3	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0022718_6	phrog_2118	100.7	1.7e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022718_6	UniRef90_A0A417HX51	214.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0022718_6	742740.HMPREF9474_03129	126.0	4.36e-36	HNH endonuclease	N/A
Pfam	UHGV-0022718_6	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0022718_6	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0022718_6	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0022718_7	phrog_38832	98.1	2.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0022718_7	665956.HMPREF1032_00143	107.0	2.17e-27	N/A	N/A
structural_annotation	UHGV-0022718_7	PF11717,TIGR02450	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022718_9	PF18895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022718_11	TIGR04381	N/A	N/A	N/A	N/A
KOfam	UHGV-0022718_13	K01160	65.7	1.2e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0022718_13	phrog_34	70.6	2.5e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022718_13	UniRef90_A0A498CNH4	146.0	2.71852e-43	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0022718_13	477974.Daud_0813	50.8	0.00000491	N/A	N/A
Pfam	UHGV-0022718_13	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0022718_13	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0022718_14	K00390	86.1	4.1e-25	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0022718_14	phrog_424	121.4	2.6e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0022718_14	UniRef90_UPI001D087498	370.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0022718_14	1408437.JNJN01000032_gene2312	331.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0022718_14	BrxP_00001	58.6	3.6e-17	BrxP	BREX
Pfam	UHGV-0022718_14	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0022718_14	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0022718_14	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0022718_15	phrog_9804	164.9	0	N/A	unknown function
UniRef90	UHGV-0022718_15	UniRef90_UPI001E312ACC	362.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0022718_15	1121344.JHZO01000003_gene981	179.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0022718_15	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0022718_15	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0022718_16	phrog_16304	90.7	1.8e-26	N/A	unknown function
UniRef90	UHGV-0022718_16	UniRef90_UPI001E560709	422.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022718_16	290402.Cbei_3733	61.6	0.0000000132	DnaD domain protein	N/A
Pfam	UHGV-0022718_16	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0022718_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0022718_16	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0022718_17	K03111	127.8	1.3e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0022718_17	phrog_44	131.2	7.4e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022718_17	UniRef90_UPI001E2A5A6F	234.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0022718_17	445972.ANACOL_01827	125.0	4.5e-35	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0022718_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0022718_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0022718_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0022718_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0022718_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0022718_18	phrog_7566	52.3	0.0000000000000082	N/A	unknown function
eggNOG-mapper	UHGV-0022718_18	693746.OBV_24070	69.7	0.0000000000000683	N/A	N/A
PHROG	UHGV-0022718_19	phrog_1389	66.1	4.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0022718_19	883156.HMPREF9282_01223	67.0	0.00000000000081	N/A	N/A
structural_annotation	UHGV-0022718_19	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0022718_20	phrog_659	196.3	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022718_20	UniRef90_UPI001E5A6693	419.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022718_20	1507.HMPREF0262_00431	235.0	0	N/A	N/A
Pfam	UHGV-0022718_20	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0022718_20	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0022718_22	phrog_4433	178.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0022718_22	33035.JPJF01000122_gene2458	94.7	2.93e-20	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0022718_22	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0022718_22	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022718_25	NF041588	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022718_26	UniRef90_UPI001E431871	187.0	0	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0022718_26	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
UniRef90	UHGV-0022718_29	UniRef90_UPI0018995761	84.7	2.35e-20	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0022718_29	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0022718_30	phrog_8	54.2	0.000000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022718_30	UniRef90_UPI001E54DE4F	103.0	2.33e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0022718_30	1378168.N510_01712	82.4	2e-17	N/A	N/A
Pfam	UHGV-0022718_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0022718_30	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022718_31	UniRef90_UPI001E2EC555	199.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0022718_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022718_31	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0022718_31	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022718_32	1280664.AUIX01000005_gene2823	64.7	0.0000000000891	N/A	N/A
KOfam	UHGV-0022718_33	K14059	155.7	0	int; integrase	N/A
PHROG	UHGV-0022718_33	phrog_1	157.2	0	integrase	integration and excision
UniRef90	UHGV-0022718_33	UniRef90_UPI001E298856	719.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0022718_33	1007096.BAGW01000023_gene159	272.0	0	Phage integrase family	N/A
Pfam	UHGV-0022718_33	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0022718_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0022718_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0022718_33	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0022718_34	K01447	84.3	2e-24	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0022718_34	phrog_15001	200.2	0	endolysin	lysis
UniRef90	UHGV-0022718_34	UniRef90_A0A8D9UHF0	488.0	0	PGRP protein	N/A
eggNOG-mapper	UHGV-0022718_34	411483.FAEPRAA2165_03397	196.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0022718_34	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0022718_34	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0022718_34	PF01510,NF008758,COG5632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022718_35	1347392.CCEZ01000043_gene405	54.3	0.0000000402	N/A	N/A
PHROG	UHGV-0022718_36	phrog_37604	62.5	6.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0022718_36	457412.RSAG_01109	62.4	0.000000000204	N/A	N/A
PHROG	UHGV-0022718_37	phrog_27545	120.5	1e-35	N/A	unknown function
UniRef90	UHGV-0022718_37	UniRef90_A0A2V2GQB6	291.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0022718_37	411471.SUBVAR_06976	140.0	5.54998e-41	N/A	N/A
Pfam	UHGV-0022718_37	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
UniRef90	UHGV-0022718_39	UniRef90_A0A8D9UHD8	58.9	0.00000964	mRNA splicing protein	N/A
Pfam	UHGV-0022718_39	PF13418	N/A	N/A	Galactose oxidase, central domain	Kelch_4
structural_annotation	UHGV-0022718_39	PF16472,MF_01195,TIGR03548,COG3055	N/A	N/A	N/A	N/A