UHGV-0022981 (vOTU-044286)

Viral Genome: UHGV-0022981

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0022981
vOTU ID	vOTU-044286
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_D_23_2656__NODE_964_length_40424_cov_18.407490
Associated BioSample	SAMEA4766394
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9802
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.04
Jumbo phage	No

Genome content
Genome length (bp)	40,361
GC content	53.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	91%
Average CDS length (bps)	556.41
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0022981_1	phrog_2468	80.4	1.3e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0022981_1	UniRef90_A0A844DBI4	536.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0022981_1	1504822.CCNO01000013_gene286	114.0	1.81e-25	cell adhesion	N/A
Pfam	UHGV-0022981_1	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0022981_1	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022981_1	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_2	phrog_64	126.9	5.7e-38	portal protein	head and packaging
UniRef90	UHGV-0022981_2	UniRef90_A0A6N7TNT3	496.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0022981_2	673376.F2VHW1_9CAUD	164.0	6.82432e-43	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0022981_2	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0022981_2	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_3	phrog_15471	148.5	2.66247e-44	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022981_3	UniRef90_UPI0009471AF7	172.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0022981_3	1235800.C819_00490	142.0	4.84e-40	HNH endonuclease	N/A
Pfam	UHGV-0022981_3	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0022981_3	PF13392,PF10013,COG4068	N/A	N/A	N/A	N/A
KOfam	UHGV-0022981_4	K06909	376.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0022981_4	phrog_3717	158.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0022981_4	UniRef90_A0A6L8SYJ6	490.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0022981_4	411471.SUBVAR_06998	426.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0022981_4	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0022981_4	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0022981_4	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0022981_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0022981_4	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022981_5	PF17941,MF_01917,NF010490,COG3886	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022981_7	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0022981_8	K01160	70.1	5.5e-20	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0022981_8	phrog_34	65.6	8.7e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022981_8	UniRef90_A0A844DBG8	218.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0022981_8	561177.ANHYDRO_01396	124.0	5.34e-35	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0022981_8	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0022981_8	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0022981_8	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_9	phrog_3136	116.8	1e-34	N/A	unknown function
UniRef90	UHGV-0022981_9	UniRef90_A0A6N7TMC2	226.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0022981_9	1235793.C809_02645	58.5	0.0000000888	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0022981_9	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0022981_9	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_10	phrog_757	171.4	0	DNA methyltransferase	other
UniRef90	UHGV-0022981_10	UniRef90_UPI001C00B13F	439.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0022981_10	748224.HMPREF9436_03069	324.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0022981_10	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0022981_10	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_12	phrog_15768	112.5	2.3e-33	N/A	unknown function
UniRef90	UHGV-0022981_12	UniRef90_A0A2J4JRQ7	258.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022981_12	748224.HMPREF9436_03357	130.0	2.84e-34	N/A	N/A
Pfam	UHGV-0022981_12	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0022981_12	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_13	phrog_14105	233.2	0	N/A	unknown function
UniRef90	UHGV-0022981_13	UniRef90_A0A239CRY1	213.0	0	Pentapeptide repeat-containing protein	N/A
eggNOG-mapper	UHGV-0022981_13	97138.C820_00368	140.0	1.13e-35	PPE family	N/A
Pfam	UHGV-0022981_13	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0022981_13	COG5651	N/A	N/A	PPE-repeat protein	N/A
KOfam	UHGV-0022981_14	K03111	137.5	1.4e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0022981_14	phrog_44	144.2	5.49309e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022981_14	UniRef90_UPI001C00AA91	236.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0022981_14	718252.FP2_06770	216.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0022981_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0022981_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0022981_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0022981_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0022981_14	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_15	phrog_561	103.4	2.2e-30	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022981_15	UniRef90_UPI0011C8A287	144.0	1.4e-39	recombinase RecT	N/A
eggNOG-mapper	UHGV-0022981_15	742733.HMPREF9469_01849	139.0	3.81e-38	N/A	N/A
structural_annotation	UHGV-0022981_15	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022981_17	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022981_20	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_22	phrog_4433	110.5	1.82169e-44	N/A	unknown function
eggNOG-mapper	UHGV-0022981_22	394503.Ccel_3068	87.8	1.98e-18	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0022981_22	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
COG	UHGV-0022981_22	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-0022981_23	UniRef90_A0A1C7FQD9	78.2	1.55e-17	Transcriptional regulator	N/A
structural_annotation	UHGV-0022981_23	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_24	phrog_8	43.6	0.0000000000056	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022981_24	UniRef90_A0A1V0QCF9	81.3	1.23e-17	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0022981_24	1226322.HMPREF1545_00148	77.0	1.16e-16	Transcriptional	N/A
Pfam	UHGV-0022981_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022981_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022981_24	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0022981_30	K15773	43.4	0.0000000000063	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0022981_30	phrog_2328	40.8	0.000000000021	transcriptional repressor	transcription regulation
UniRef90	UHGV-0022981_30	UniRef90_A0A6N7TLT0	211.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0022981_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022981_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022981_30	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0022981_31	K14059	158.5	0	int; integrase	N/A
PHROG	UHGV-0022981_31	phrog_1	190.2	0	integrase	integration and excision
UniRef90	UHGV-0022981_31	UniRef90_A0A174D176	576.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0022981_31	411471.SUBVAR_05137	271.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0022981_31	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0022981_31	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0022981_31	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022981_33	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_34	phrog_20016	202.7	0	N/A	unknown function
UniRef90	UHGV-0022981_34	UniRef90_A0A285PT46	194.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0022981_34	1226322.HMPREF1545_00077	181.0	0	N/A	N/A
structural_annotation	UHGV-0022981_34	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_36	phrog_16490	194.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0022981_36	397290.C810_01328	131.0	1.91e-33	N/A	N/A
PHROG	UHGV-0022981_37	phrog_22984	67.6	1.8e-19	N/A	unknown function
PHROG	UHGV-0022981_38	phrog_21718	89.1	4.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0022981_38	397290.C810_05210	84.7	1.33e-18	N/A	N/A
PHROG	UHGV-0022981_39	phrog_3754	93.3	2.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0022981_39	1235790.C805_00054	112.0	2.72e-30	N/A	N/A
UniRef90	UHGV-0022981_42	UniRef90_A0A7X2P872	112.0	6.75e-29	Ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-0022981_42	1033733.CAEK01000007_gene1628	108.0	1.89e-28	N/A	N/A
structural_annotation	UHGV-0022981_42	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022981_44	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_46	phrog_15303	82.8	3e-24	N/A	unknown function
PHROG	UHGV-0022981_47	phrog_1863	74.7	6.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0022981_47	718252.FP2_04900	149.0	0	N/A	N/A
KOfam	UHGV-0022981_48	K07273	169.6	0	acm; lysozyme	N/A
PHROG	UHGV-0022981_48	phrog_291	133.9	1.4e-39	endolysin	lysis
UniRef90	UHGV-0022981_48	UniRef90_UPI001D0EE7D8	296.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0022981_48	748224.HMPREF9436_00154	285.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0022981_48	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0022981_48	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0022981_48	PF01183,COG3757	N/A	N/A	N/A	N/A
COG	UHGV-0022981_49	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0022981_49	PF05096,MF_03141,NF035926,COG3823	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022981_50	UniRef90_A0A1M6MWV9	67.0	0.0000000004	Phage tail protein	N/A
eggNOG-mapper	UHGV-0022981_50	1111121.HMPREF1247_1241	65.5	0.000000000226	N/A	N/A
structural_annotation	UHGV-0022981_50	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_52	phrog_3558	284.7	0	tail protein	tail
UniRef90	UHGV-0022981_52	UniRef90_UPI001C01D15B	769.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0022981_52	877414.ATWA01000019_gene2050	145.0	1.49e-33	Phage minor structural protein	N/A
Pfam	UHGV-0022981_52	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0022981_52	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0022981_52	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_53	phrog_28775	94.4	9e-28	tail length tape measure protein	tail
UniRef90	UHGV-0022981_53	UniRef90_A0A844DDD5	556.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0022981_53	411470.RUMGNA_02228	130.0	2.42e-28	tape measure	N/A
Pfam	UHGV-0022981_53	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0022981_53	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0022981_53	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0022981_53	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_56	phrog_885	61.0	1.4e-17	major tail protein	tail
UniRef90	UHGV-0022981_56	UniRef90_A0A843J9F0	125.0	5.91e-32	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0022981_56	457396.CSBG_01054	53.5	0.0000058	Chitobiase/beta-hexosaminidase C-terminal domain	N/A
COG	UHGV-0022981_56	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-0022981_56	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022981_57	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_58	phrog_17977	43.9	0.0000000000031	N/A	unknown function
UniRef90	UHGV-0022981_58	UniRef90_A0A844DHJ8	228.0	0	Phage head closure protein	N/A
structural_annotation	UHGV-0022981_58	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_60	phrog_544	142.1	3.50044e-42	major head protein	head and packaging
UniRef90	UHGV-0022981_60	UniRef90_R0BKA1	434.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0022981_60	476272.RUMHYD_01776	324.0	0	N/A	N/A
structural_annotation	UHGV-0022981_60	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022981_61	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0022981_62	phrog_5	48.7	0.00000000000017	tail completion or Neck1 protein	connector
UniRef90	UHGV-0022981_62	UniRef90_A0A844DDB3	281.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0022981_62	929506.CbC4_1219	89.0	2.77e-20	N/A	N/A
Pfam	UHGV-0022981_62	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0022981_62	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A