UHGV-0023312 (vOTU-043437)

Viral Genome: UHGV-0023312

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0023312
vOTU ID	vOTU-043437
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_M_13_1797__NODE_758_length_41439_cov_37.829215
Associated BioSample	SAMEA4766043
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.2
Jumbo phage	No

Genome content
Genome length (bp)	41,419
GC content	52.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	89%
Average CDS length (bps)	524.57
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0023312_1	phrog_4433	85.3	6.1e-25	N/A	unknown function
Pfam	UHGV-0023312_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0023312_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0023312_1	NF007410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023312_4	UniRef90_A0A845QLQ8	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023312_4	33035.JPJF01000135_gene5082	124.0	9.62e-33	N/A	N/A
Pfam	UHGV-0023312_4	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0023312_4	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_5	phrog_434	43.7	0.0000000000036	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023312_5	UniRef90_B0PAM4	158.0	1.4013e-45	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0023312_5	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_6	phrog_72	59.6	9.5e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023312_6	UniRef90_A0A8D9PDS2	186.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0023312_6	445972.ANACOL_01825	148.0	8.85621e-43	N/A	N/A
Pfam	UHGV-0023312_6	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0023312_6	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_7	phrog_7566	96.6	1.3e-28	N/A	unknown function
UniRef90	UHGV-0023312_7	UniRef90_A0A8D9UHC0	154.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0023312_7	693746.OBV_25470	129.0	2.02e-37	N/A	N/A
KOfam	UHGV-0023312_8	K03111	143.8	1.69978e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0023312_8	phrog_44	138.8	3.30006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023312_8	UniRef90_A0A810PVC4	215.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0023312_8	693746.OBV_19910	202.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0023312_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0023312_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0023312_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0023312_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0023312_8	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_9	phrog_15768	79.9	1.8e-24	N/A	unknown function
UniRef90	UHGV-0023312_9	UniRef90_A0A8D9PDU3	134.0	1.28e-35	N/A	N/A
eggNOG-mapper	UHGV-0023312_9	203119.Cthe_2466	88.6	7.22e-18	N/A	N/A
Pfam	UHGV-0023312_9	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0023312_9	PF19808	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023312_10	TIGR00122,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_11	phrog_9298	331.8	0	radical SAM domain protein	other
UniRef90	UHGV-0023312_11	UniRef90_A0A416NY06	428.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-0023312_11	1235797.C816_00412	437.0	0	N/A	N/A
COG	UHGV-0023312_11	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0023312_11	MF_01865,TIGR00089,COG0621	N/A	N/A	N/A	N/A
KOfam	UHGV-0023312_13	K01160	73.6	4.5e-21	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0023312_13	phrog_34	64.1	2.5e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023312_13	UniRef90_UPI0018ABA1B6	157.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0023312_13	796940.HMPREF9628_00163	114.0	4.89e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0023312_13	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0023312_13	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0023312_13	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_15	phrog_22529	117.0	8.2e-35	N/A	unknown function
UniRef90	UHGV-0023312_15	UniRef90_A0A810Q1V0	282.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0023312_15	1410622.JNKY01000010_gene1282	103.0	1.16e-24	3D domain	N/A
Pfam	UHGV-0023312_15	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0023312_15	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0023312_15	PF06725,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_18	phrog_599	45.3	0.0000000000018	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0023312_18	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0023312_18	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0023312_18	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0023312_18	PF14354	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023312_20	UniRef90_A0A8D9PDT5	51.6	0.00000253	Hydrogenase/urease nickel incorporation protein	N/A
eggNOG-mapper	UHGV-0023312_24	693746.OBV_18010	122.0	2.18e-33	N/A	N/A
structural_annotation	UHGV-0023312_24	TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023312_26	UniRef90_UPI001D07B715	114.0	9.02e-29	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0023312_26	1235793.C809_00539	54.7	0.000000982	N/A	N/A
Pfam	UHGV-0023312_26	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0023312_26	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0023312_29	K14060	141.6	5.89947e-42	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0023312_29	phrog_125	187.7	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023312_29	UniRef90_A6NXH6	231.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0023312_29	411467.BACCAP_02922	231.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0023312_29	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0023312_29	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0023312_29	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_31	phrog_38	148.6	3.64338e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0023312_31	UniRef90_A0A6I2QXZ5	884.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0023312_31	1298920.KI911353_gene2682	290.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0023312_31	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0023312_31	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023312_31	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_32	phrog_64	220.4	0	portal protein	head and packaging
UniRef90	UHGV-0023312_32	UniRef90_A0A6I2QXE1	690.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0023312_32	1123263.AUKY01000015_gene1609	416.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0023312_32	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0023312_32	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_34	phrog_1328	121.7	4.3e-36	major head protein	head and packaging
UniRef90	UHGV-0023312_34	UniRef90_UPI00164DD2D5	586.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023312_34	665956.HMPREF1032_03619	226.0	0	N/A	N/A
Pfam	UHGV-0023312_34	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0023312_34	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023312_35	UniRef90_UPI001898B4B4	147.0	5.60519e-44	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0023312_35	1298920.KI911353_gene2658	56.2	0.00000000774	N/A	N/A
Pfam	UHGV-0023312_35	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0023312_35	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023312_36	1298920.KI911353_gene2656	87.0	3.15e-20	N/A	N/A
eggNOG-mapper	UHGV-0023312_37	1298920.KI911353_gene2654	59.7	0.00000000965	N/A	N/A
structural_annotation	UHGV-0023312_38	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_39	phrog_158	58.8	1.1e-16	major tail protein	tail
UniRef90	UHGV-0023312_39	UniRef90_A0A1C6L0H9	219.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0023312_39	1232453.BAIF02000058_gene1634	97.1	7.39e-24	N/A	N/A
Pfam	UHGV-0023312_39	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0023312_39	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023312_40	UniRef90_UPI0018999178	137.0	7.33e-40	N/A	N/A
eggNOG-mapper	UHGV-0023312_40	469596.HMPREF9488_01311	94.4	1.1e-23	N/A	N/A
Pfam	UHGV-0023312_40	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0023312_40	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023312_41	1121333.JMLH01000047_gene1011	50.8	0.00000182	N/A	N/A
PHROG	UHGV-0023312_42	phrog_1535	153.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0023312_42	UniRef90_R6TDK7	162.0	3.33e-37	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0023312_42	1121866.AUGK01000003_gene1437	337.0	0	phage tail tape measure protein	N/A
COG	UHGV-0023312_42	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0023312_43	phrog_1194	121.3	3.8e-36	N/A	unknown function
UniRef90	UHGV-0023312_43	UniRef90_A0A1Z5ISU0	100.0	4.19e-25	N/A	N/A
eggNOG-mapper	UHGV-0023312_43	673837.D2IZU9_9CAUD	111.0	5.84e-30	N/A	N/A
Pfam	UHGV-0023312_43	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0023312_43	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_44	phrog_6616	103.6	2.2e-31	tail protein	tail
eggNOG-mapper	UHGV-0023312_44	469596.HMPREF9488_01318	244.0	0	N/A	N/A
structural_annotation	UHGV-0023312_44	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_48	phrog_35892	63.0	1.6e-18	N/A	unknown function
Pfam	UHGV-0023312_48	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-0023312_48	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023312_48	PF13306	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_49	phrog_240	41.1	0.000000000025	head protein	head and packaging
structural_annotation	UHGV-0023312_50	NF033746,COG3764	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023312_51	UniRef90_A0A3D5TE86	152.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0023312_51	1235835.C814_01206	115.0	1.19e-32	N/A	N/A
PHROG	UHGV-0023312_52	phrog_443	56.9	5.7e-16	holin	lysis
UniRef90	UHGV-0023312_52	UniRef90_UPI0009B98E42	99.8	4.02e-26	holin	N/A
eggNOG-mapper	UHGV-0023312_52	626523.GCWU000342_01012	94.7	1.18e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0023312_52	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0023312_52	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0023312_53	K01448	72.4	6.2e-21	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0023312_53	phrog_435	99.2	5.3e-29	endolysin	lysis
UniRef90	UHGV-0023312_53	UniRef90_A0A810PUG7	449.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0023312_53	994573.T472_0211265	149.0	3.69943e-42	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0023312_53	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0023312_53	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0023312_53	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0023312_53	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_56	phrog_22984	49.5	0.000000000000074	N/A	unknown function
PHROG	UHGV-0023312_57	phrog_16490	62.8	7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0023312_57	476272.RUMHYD_01770	57.4	0.000000215	N/A	N/A
structural_annotation	UHGV-0023312_58	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023312_59	UniRef90_A0A843GWV6	118.0	1.77e-32	Rubrerythrin domain-containing protein	N/A
KOfam	UHGV-0023312_60	K14059	159.6	0	int; integrase	N/A
PHROG	UHGV-0023312_60	phrog_1	161.9	0	integrase	integration and excision
UniRef90	UHGV-0023312_60	UniRef90_A0A1C5W824	553.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0023312_60	445972.ANACOL_01797	295.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0023312_60	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0023312_60	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0023312_60	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023312_61	UniRef90_A0A8D9UHA6	159.0	0	Helix-turn-helix XRE-family like protein	N/A
structural_annotation	UHGV-0023312_61	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023312_64	COG1321	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023312_65	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023312_67	UniRef90_A0A810QCI5	57.4	0.00000000224	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0023312_67	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0023312_67	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023312_67	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023312_68	UniRef90_A0A8D9PDM8	70.5	0.0000000000000117	Pyocin activator protein	N/A
structural_annotation	UHGV-0023312_68	PF11112,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0023312_70	phrog_4433	159.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0023312_70	573061.Clocel_3578	137.0	8.51e-37	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0023312_70	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A