UHGV-0023544 (vOTU-043454)

Viral Genome: UHGV-0023544

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0023544
vOTU ID	vOTU-043454
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_13_1776__NODE_2859_length_39464_cov_555.265367
Associated BioSample	SAMEA4766035
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.74
Jumbo phage	No

Genome content
Genome length (bp)	39,387
GC content	56.46%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	90%
Average CDS length (bps)	536.59
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0023544_1	PF18652	N/A	N/A	Adhesin P1 N-terminal domain	Adhesin_P1_N
PHROG	UHGV-0023544_2	phrog_64	133.8	9.1e-40	portal protein	head and packaging
UniRef90	UHGV-0023544_2	UniRef90_A0A285PU84	410.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0023544_2	1035196.HMPREF9998_01723	82.8	0.0000000000000369	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0023544_2	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0023544_2	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0023544_3	K06909	126.2	3e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0023544_3	phrog_2	154.8	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0023544_3	UniRef90_A0A373MY72	564.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0023544_3	1120746.CCNL01000014_gene2093	506.0	0	DNA packaging	N/A
Pfam	UHGV-0023544_3	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0023544_3	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0023544_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0023544_3	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_4	phrog_309	110.9	8.6e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0023544_4	UniRef90_A0A174GY31	107.0	1.59e-27	Phage-like protein	N/A
eggNOG-mapper	UHGV-0023544_4	742733.HMPREF9469_01828	106.0	1.14e-27	transposase activity	N/A
COG	UHGV-0023544_4	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-0023544_5	K07319	124.1	1.2e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0023544_5	phrog_498	254.6	0	DNA methyltransferase	other
UniRef90	UHGV-0023544_5	UniRef90_A0A810Q3Z7	368.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0023544_5	742823.HMPREF9465_00225	269.0	0	PFAM DNA methylase N-4 N-6	N/A
PADLOC	UHGV-0023544_5	MTase_II_00015	120.1	0	Type II methyltransferase	RM
Pfam	UHGV-0023544_5	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0023544_5	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0023544_5	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_6	phrog_620	139.0	2.89999e-41	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023544_6	UniRef90_A0A810PZK9	173.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0023544_6	1423758.BN55_01455	115.0	3.48e-28	DNA methylase	N/A
PADLOC	UHGV-0023544_6	MTase_II_00015	79.0	5.8e-23	Type II methyltransferase	RM
Pfam	UHGV-0023544_6	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0023544_6	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0023544_6	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023544_7	742738.HMPREF9460_02503	76.3	9.91e-17	N/A	N/A
structural_annotation	UHGV-0023544_7	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_9	phrog_3584	135.8	2.9e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0023544_9	1203606.HMPREF1526_00985	71.6	0.00000000000764	N/A	N/A
structural_annotation	UHGV-0023544_9	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_12	phrog_2245	97.5	1.2e-28	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0023544_12	UniRef90_A0A4U9RLZ8	84.7	1.63e-19	N/A	N/A
eggNOG-mapper	UHGV-0023544_12	428125.CLOLEP_01814	90.1	6.94e-22	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-0023544_12	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_13	phrog_24518	61.4	1.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0023544_13	1519439.JPJG01000077_gene922	87.8	1.04e-18	N/A	N/A
structural_annotation	UHGV-0023544_15	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_16	phrog_424	106.4	2.4e-31	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0023544_16	UniRef90_R6PFX4	448.0	0	Putative phage reductase	N/A
eggNOG-mapper	UHGV-0023544_16	272563.CD630_09300	107.0	2.94e-25	N/A	N/A
PADLOC	UHGV-0023544_16	SspD_00001	65.7	1.5e-18	SspD	SSP
COG	UHGV-0023544_16	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0023544_16	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_17	phrog_824	149.8	5.60519e-45	N/A	unknown function
UniRef90	UHGV-0023544_17	UniRef90_UPI00189BCDD7	152.0	4.2039e-45	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0023544_17	665956.HMPREF1032_00132	143.0	8.68945e-42	VRR_NUC	N/A
Pfam	UHGV-0023544_17	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
Pfam	UHGV-0023544_19	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0023544_19	PF13384	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_21	phrog_66	41.3	0.000000000036	excisionase and transcriptional regulator	integration and excision
UniRef90	UHGV-0023544_21	UniRef90_A0A1C7FM84	53.9	0.0000000363	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023544_21	742738.HMPREF9460_02489	53.1	0.0000000123	Helix-turn-helix domain	N/A
Pfam	UHGV-0023544_21	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0023544_21	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0023544_25	K22300	60.9	2.9e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0023544_25	phrog_8	55.3	0.0000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023544_25	UniRef90_A0A1Q6RKG1	134.0	7.31e-38	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0023544_25	1095750.HMPREF9970_1686	103.0	1.93e-26	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0023544_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023544_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023544_25	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023544_26	411489.CLOL250_00906	64.7	0.000000000125	domain protein	N/A
COG	UHGV-0023544_26	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-0023544_28	K07729	40.1	0.000000000054	K07729; putative transcriptional regulator	N/A
Pfam	UHGV-0023544_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023544_28	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0023544_28	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0023544_29	K14059	313.5	0	int; integrase	N/A
PHROG	UHGV-0023544_29	phrog_1	229.2	0	integrase	integration and excision
UniRef90	UHGV-0023544_29	UniRef90_UPI0019587C62	505.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0023544_29	1235797.C816_02098	396.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0023544_29	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0023544_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0023544_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0023544_29	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023544_30	1226322.HMPREF1545_00079	109.0	1.29e-29	N/A	N/A
eggNOG-mapper	UHGV-0023544_31	476272.RUMHYD_01772	50.4	0.00000828	N/A	N/A
structural_annotation	UHGV-0023544_31	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_32	phrog_20016	196.1	0	N/A	unknown function
UniRef90	UHGV-0023544_32	UniRef90_A0A285PT46	206.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0023544_32	1226322.HMPREF1545_00077	184.0	0	N/A	N/A
structural_annotation	UHGV-0023544_32	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_33	phrog_16490	132.4	3.20001e-40	N/A	unknown function
eggNOG-mapper	UHGV-0023544_33	658655.HMPREF0988_00917	132.0	6.59e-35	N/A	N/A
PHROG	UHGV-0023544_34	phrog_22984	73.7	1.4e-21	N/A	unknown function
PHROG	UHGV-0023544_35	phrog_21718	104.3	1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0023544_35	476272.RUMHYD_01768	75.9	0.0000000000000026	N/A	N/A
PHROG	UHGV-0023544_36	phrog_3754	108.8	4.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-0023544_36	1226322.HMPREF1545_00073	137.0	2.16999e-40	N/A	N/A
eggNOG-mapper	UHGV-0023544_37	469378.Ccur_02570	64.7	0.00000000000035	N/A	N/A
structural_annotation	UHGV-0023544_39	NF010256	N/A	N/A	N/A	N/A
Pfam	UHGV-0023544_41	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
PHROG	UHGV-0023544_42	phrog_608	68.7	8.6e-20	holin	lysis
UniRef90	UHGV-0023544_42	UniRef90_A0A1I3T262	93.6	1.45e-22	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
eggNOG-mapper	UHGV-0023544_42	1336234.JAGN01000004_gene510	55.8	0.0000000188	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0023544_42	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0023544_42	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023544_43	UniRef90_A0A3A9IW95	114.0	1.59e-31	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0023544_43	742765.HMPREF9457_03364	107.0	3.23e-29	N/A	N/A
PHROG	UHGV-0023544_44	phrog_14030	168.4	0	N/A	unknown function
UniRef90	UHGV-0023544_44	UniRef90_U2W578	196.0	0	Cpl-7 lysozyme protein	N/A
eggNOG-mapper	UHGV-0023544_44	1321782.HMPREF1986_02283	196.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0023544_44	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0023544_44	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0023544_44	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0023544_44	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_45	phrog_355	57.8	1.7e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023544_45	UniRef90_A0A396KGT7	170.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023544_45	97138.C820_00250	130.0	8.3e-38	N/A	N/A
Pfam	UHGV-0023544_45	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0023544_45	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_46	phrog_30034	102.9	4e-30	N/A	unknown function
UniRef90	UHGV-0023544_46	UniRef90_R6RWR8	145.0	3.61997e-41	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-0023544_46	1226322.HMPREF1545_04028	108.0	2.77e-28	N/A	N/A
Pfam	UHGV-0023544_46	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0023544_46	PF14600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023544_50	PF21582,NF038128	N/A	N/A	N/A	N/A
KOfam	UHGV-0023544_51	K06237	57.8	3.8e-17	COL4A; collagen type IV alpha	N/A
PHROG	UHGV-0023544_51	phrog_32779	57.3	2.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0023544_51	1232443.BAIA02000078_gene14	78.6	0.00000000000216	nuclear chromosome segregation	N/A
Pfam	UHGV-0023544_51	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0023544_51	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0023544_52	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_53	phrog_26795	116.8	4.1e-35	N/A	unknown function
UniRef90	UHGV-0023544_53	UniRef90_A0A5J6T4K8	127.0	2.21e-29	Minor tail protein	N/A
eggNOG-mapper	UHGV-0023544_53	1382315.JPOI01000001_gene271	129.0	2.58e-31	N/A	N/A
structural_annotation	UHGV-0023544_53	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_54	phrog_37549	43.4	0.0000000000019	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0023544_54	1195236.CTER_5103	104.0	2.25e-20	N/A	N/A
structural_annotation	UHGV-0023544_54	PF02010,PF06995,MF_04116,NF010681,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_55	phrog_6900	226.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0023544_55	UniRef90_A0A3D0EFB4	260.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0023544_55	1123312.KB904569_gene357	272.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0023544_55	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0023544_55	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_58	phrog_885	44.0	0.0000000000019	major tail protein	tail
eggNOG-mapper	UHGV-0023544_58	1504822.CCNO01000012_gene492	185.0	0	N/A	N/A
structural_annotation	UHGV-0023544_58	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023544_59	PF11367	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023544_60	UniRef90_A0A285PT57	51.6	0.00000481	Phage head-tail joining protein	N/A
Pfam	UHGV-0023544_60	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0023544_60	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_62	phrog_544	167.4	0	major head protein	head and packaging
UniRef90	UHGV-0023544_62	UniRef90_A0A810PZM2	482.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0023544_62	1347392.CCEZ01000005_gene1236	242.0	0	N/A	N/A
Pfam	UHGV-0023544_62	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0023544_62	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023544_63	UniRef90_A0A6B9SU02	91.3	1.97e-19	Fibronectin autolysin	N/A
structural_annotation	UHGV-0023544_63	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_64	phrog_5	55.7	0.0000000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-0023544_64	UniRef90_UPI0018E4B047	72.4	0.000000000000173	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0023544_64	1280689.AUJC01000007_gene3313	68.9	0.000000000000912	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-0023544_64	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0023544_66	phrog_859	99.9	2.4e-29	portal protein	head and packaging
eggNOG-mapper	UHGV-0023544_66	1329516.JPST01000018_gene2643	87.4	0.00000000000000383	cell adhesion	N/A
Pfam	UHGV-0023544_66	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0023544_66	COG2369	N/A	N/A	N/A	N/A