UHGV-0023612 (vOTU-012102)

Viral Genome: UHGV-0023612

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0023612
vOTU ID	vOTU-012102
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_14_1915__NODE_2402_length_36417_cov_11.919620
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9703
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.81
Jumbo phage	No

Genome content
Genome length (bp)	36,417
GC content	58.75%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	91%
Average CDS length (bps)	676.16
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0023612_1	UniRef90_K1R422	205.0	0	Site-specific recombinase (Fragment)	N/A
eggNOG-mapper	UHGV-0023612_1	748224.HMPREF9436_01608	227.0	0	N/A	N/A
COG	UHGV-0023612_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
PHROG	UHGV-0023612_4	phrog_5763	73.5	1.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0023612_4	742740.HMPREF9474_04284	119.0	4.28e-28	N/A	N/A
PHROG	UHGV-0023612_5	phrog_263	72.2	5.2e-21	holin	lysis
UniRef90	UHGV-0023612_5	UniRef90_A0A564SW15	137.0	2.13e-40	Phage lysis protein, holin	N/A
eggNOG-mapper	UHGV-0023612_5	718252.FP2_06470	134.0	2.85e-40	SPP1 phage holin	N/A
Pfam	UHGV-0023612_5	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0023612_5	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0023612_5	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_6	phrog_1863	72.1	4.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0023612_6	748224.HMPREF9436_01412	133.0	6.02001e-40	N/A	N/A
KOfam	UHGV-0023612_7	K08640	97.7	1.8e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0023612_7	phrog_894	115.9	3.8e-34	endolysin	lysis
UniRef90	UHGV-0023612_7	UniRef90_A0A1C5NY12	272.0	0	Zinc D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-0023612_7	748224.HMPREF9436_03320	269.0	0	Peptidase M15	N/A
Pfam	UHGV-0023612_7	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0023612_7	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023612_7	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_8	phrog_2310	64.7	7.3e-19	N/A	unknown function
PHROG	UHGV-0023612_9	phrog_29248	55.0	8.7e-16	N/A	unknown function
PHROG	UHGV-0023612_10	phrog_9534	266.0	0	head protein	head and packaging
eggNOG-mapper	UHGV-0023612_10	748224.HMPREF9436_00702	445.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0023612_10	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_11	phrog_538	138.8	3.89995e-41	minor tail protein	tail
UniRef90	UHGV-0023612_11	UniRef90_A0A4U7JBL2	96.3	6.63e-19	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0023612_11	748224.HMPREF9436_03324	162.0	1.54143e-44	N/A	N/A
Pfam	UHGV-0023612_11	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0023612_11	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_12	phrog_36410	51.7	0.000000000000012	N/A	unknown function
UniRef90	UHGV-0023612_12	UniRef90_A0A564T4N7	408.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0023612_12	748224.HMPREF9436_00700	512.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0023612_12	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_13	phrog_28775	386.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0023612_13	UniRef90_A0A6N8H0F9	103.0	6.86e-19	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0023612_13	748224.HMPREF9436_00699	1211.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0023612_13	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023612_14	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_15	phrog_1526	71.4	1.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0023612_15	875454.BAEW01000017_gene1589	55.1	0.00000000993	N/A	N/A
PHROG	UHGV-0023612_16	phrog_117	177.5	0	major tail protein	tail
UniRef90	UHGV-0023612_16	UniRef90_E2ZGB2	348.0	0	Prophage LambdaSa1, structural protein	N/A
eggNOG-mapper	UHGV-0023612_16	748224.HMPREF9436_00696	348.0	0	domain, Protein	N/A
COG	UHGV-0023612_16	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023612_16	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_17	phrog_123	48.4	0.00000000000017	tail terminator	connector
eggNOG-mapper	UHGV-0023612_17	748224.HMPREF9436_00695	214.0	0	N/A	N/A
structural_annotation	UHGV-0023612_17	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_18	phrog_387	79.3	2.6e-23	neck protein	connector
UniRef90	UHGV-0023612_18	UniRef90_A0A4U9XLC1	72.4	0.0000000000000122	N/A	N/A
eggNOG-mapper	UHGV-0023612_18	748224.HMPREF9436_00694	182.0	0	N/A	N/A
PHROG	UHGV-0023612_19	phrog_501	81.5	9e-24	head closure Hc1	connector
UniRef90	UHGV-0023612_19	UniRef90_A0A139QHM6	123.0	3.55e-34	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0023612_19	748224.HMPREF9436_00693	140.0	1.08993e-41	N/A	N/A
structural_annotation	UHGV-0023612_19	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_20	phrog_137	107.1	9.6e-32	head-tail adaptor Ad1	connector
UniRef90	UHGV-0023612_20	UniRef90_A0A564SC88	211.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0023612_20	768726.HMPREF9178_1061	155.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0023612_20	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0023612_20	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_22	phrog_32396	129.0	1.2e-38	N/A	unknown function
UniRef90	UHGV-0023612_22	UniRef90_A0A564SB39	535.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0023612_22	1321784.HMPREF1987_01073	371.0	0	Phage capsid family	N/A
Pfam	UHGV-0023612_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0023612_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0023612_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_23	phrog_233	82.6	3.5e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0023612_23	UniRef90_A0A847D3Z0	90.5	1.7e-20	N/A	N/A
eggNOG-mapper	UHGV-0023612_23	706433.HMPREF9430_01266	82.8	2.99e-18	N/A	N/A
structural_annotation	UHGV-0023612_23	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_24	phrog_17688	327.6	0	N/A	unknown function
UniRef90	UHGV-0023612_24	UniRef90_A0A564SCG0	806.0	0	Phage Terminase	N/A
eggNOG-mapper	UHGV-0023612_24	936375.HMPREF1152_0677	634.0	0	phage terminase, large subunit	N/A
COG	UHGV-0023612_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0023612_24	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_25	phrog_2494	288.5	0	minor head protein	head and packaging
UniRef90	UHGV-0023612_25	UniRef90_A0A1C5Y960	318.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0023612_25	1280698.AUJS01000007_gene1034	226.0	0	cell adhesion	N/A
Pfam	UHGV-0023612_25	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0023612_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023612_25	PF18451	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_26	phrog_104	291.3	0	portal protein	head and packaging
UniRef90	UHGV-0023612_26	UniRef90_A0A564SBV0	696.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0023612_26	665950.HMPREF1025_02537	560.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0023612_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0023612_26	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_27	phrog_338	100.8	1.7e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023612_27	UniRef90_A0A564SBG0	188.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0023612_27	1280698.AUJS01000007_gene1032	166.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0023612_27	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0023612_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0023612_27	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_28	phrog_36	79.5	5.1e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023612_28	UniRef90_A0A6N7TNN9	94.4	5.49e-22	N/A	N/A
eggNOG-mapper	UHGV-0023612_28	748224.HMPREF9436_01463	101.0	1.29e-25	N/A	N/A
structural_annotation	UHGV-0023612_28	PF04545,MF_00674,NF005248,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-0023612_29	K01160	48.6	0.00000000000021	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0023612_29	phrog_140	91.2	1.3e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023612_29	UniRef90_UPI00122CFAB3	244.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0023612_29	394503.Ccel_3302	139.0	1.28e-40	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0023612_29	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0023612_29	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0023612_29	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0023612_30	K07505	380.3	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0023612_30	phrog_2597	1102.6	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023612_30	UniRef90_A0A2A6Z731	1431.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0023612_30	999413.HMPREF1094_00232	874.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0023612_30	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0023612_30	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0023612_30	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0023612_30	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0023612_31	K17677	352.8	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0023612_31	phrog_16	279.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023612_31	UniRef90_A0A3A6K1C0	997.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0023612_31	610130.Closa_1369	763.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0023612_31	mREase_IV_00005	142.2	4.19969e-42	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0023612_31	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0023612_31	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0023612_31	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0023612_31	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_32	phrog_2698	195.6	0	N/A	unknown function
UniRef90	UHGV-0023612_32	UniRef90_A0A291T9B6	303.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023612_32	394503.Ccel_3308	132.0	2.46e-37	N/A	N/A
structural_annotation	UHGV-0023612_32	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_33	phrog_124	228.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023612_33	UniRef90_UPI00122C2B12	571.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0023612_33	645991.Sgly_0321	372.0	0	AAA domain	N/A
Pfam	UHGV-0023612_33	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0023612_33	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0023612_34	K03546	59.6	3.9e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0023612_34	phrog_1499	460.9	0	N/A	unknown function
UniRef90	UHGV-0023612_34	UniRef90_A0A3A6KBP8	756.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0023612_34	1235798.C817_04766	483.0	0	AAA ATPase domain	N/A
Pfam	UHGV-0023612_34	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0023612_34	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0023612_34	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0023612_35	phrog_1733	78.9	6.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0023612_35	665956.HMPREF1032_03597	183.0	0	DNA binding	N/A
COG	UHGV-0023612_35	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0023612_35	PF03677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023612_36	UniRef90_UPI001D0E65C2	127.0	6.08e-36	N/A	N/A
COG	UHGV-0023612_36	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0023612_36	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023612_41	UniRef90_A0A2A7BGV7	76.6	9.51e-17	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0023612_41	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0023612_41	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0023612_41	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0023612_44	K18830	63.8	3.1e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0023612_44	phrog_8	49.5	0.000000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023612_44	UniRef90_E2ZIF0	246.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0023612_44	748224.HMPREF9436_01444	246.0	0	N/A	N/A
PADLOC	UHGV-0023612_44	retron_type_VI_hth_cluster2_1	45.5	0.0000000000009	N/A	Retron
Pfam	UHGV-0023612_44	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0023612_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023612_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023612_46	748224.HMPREF9436_01443	592.0	0	vancomycin resistance protein	N/A
COG	UHGV-0023612_46	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
KOfam	UHGV-0023612_47	K14059	145.7	4.90454e-43	int; integrase	N/A
PHROG	UHGV-0023612_47	phrog_1	133.1	2.6e-39	integrase	integration and excision
UniRef90	UHGV-0023612_47	UniRef90_A0A2A7AII9	674.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0023612_47	748224.HMPREF9436_03382	331.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0023612_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0023612_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0023612_47	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0023612_48	K03545	48.9	2e-16	tig; trigger factor	N/A
UniRef90	UHGV-0023612_48	UniRef90_E2ZNG0	508.0	0	Trigger_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0023612_48	748224.HMPREF9436_03317	508.0	0	peptidyl-prolyl cis-trans isomerase activity	N/A
Pfam	UHGV-0023612_48	PF05698	N/A	N/A	Bacterial trigger factor protein (TF) C-terminus	Trigger_C
COG	UHGV-0023612_48	COG0544	N/A	N/A	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	N/A
UniRef90	UHGV-0023612_49	UniRef90_A0A329TFH9	163.0	0	N/A	N/A
Pfam	UHGV-0023612_49	PF12158	N/A	N/A	N/A	DUF3592