UHGV-0023728 (vOTU-005409)

Viral Genome: UHGV-0023728

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0023728
vOTU ID	vOTU-005409
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_1_1770__NODE_1054_length_58489_cov_21.672259
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9747
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.13
Jumbo phage	No

Genome content
Genome length (bp)	58,412
GC content	49.76%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	87
CDS density	93%
Average CDS length (bps)	621.07
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0023728_1	phrog_22978	355.7	0	N/A	unknown function
UniRef90	UHGV-0023728_1	UniRef90_UPI001C019A6F	257.0	0	OmpH family outer membrane protein	N/A
eggNOG-mapper	UHGV-0023728_1	1410650.JHWL01000003_gene2814	190.0	2.8026e-45	N/A	N/A
Pfam	UHGV-0023728_1	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0023728_1	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
Pfam	UHGV-0023728_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
PHROG	UHGV-0023728_6	phrog_2172	134.2	6.8e-40	N/A	unknown function
UniRef90	UHGV-0023728_6	UniRef90_W1I4H7	171.0	0	Uncultured bacterium plasmid pRGI00071	N/A
eggNOG-mapper	UHGV-0023728_6	1408311.JNJM01000024_gene619	147.0	3.38e-40	Initiator Replication protein	N/A
Pfam	UHGV-0023728_6	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-0023728_6	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-0023728_6	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-0023728_6	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
KOfam	UHGV-0023728_7	K14060	117.6	1.2e-34	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0023728_7	phrog_125	160.7	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023728_7	UniRef90_A0A1G5B3B6	169.0	0	Site-specific DNA recombinase	N/A
eggNOG-mapper	UHGV-0023728_7	877420.ATVW01000008_gene521	172.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0023728_7	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0023728_7	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0023728_7	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023728_9	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_10	phrog_20016	193.9	0	N/A	unknown function
UniRef90	UHGV-0023728_10	UniRef90_A0A2Z4QB67	171.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0023728_10	1226322.HMPREF1545_00077	169.0	0	N/A	N/A
structural_annotation	UHGV-0023728_10	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_11	phrog_16490	118.3	7.9e-36	N/A	unknown function
eggNOG-mapper	UHGV-0023728_11	1408437.JNJN01000043_gene803	132.0	4.6e-35	N/A	N/A
PHROG	UHGV-0023728_12	phrog_22984	69.5	4.4e-20	N/A	unknown function
PHROG	UHGV-0023728_13	phrog_21718	117.9	7.2e-35	N/A	unknown function
eggNOG-mapper	UHGV-0023728_13	397290.C810_05210	92.4	1.48e-21	N/A	N/A
PHROG	UHGV-0023728_14	phrog_3754	107.4	1.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0023728_14	476272.RUMHYD_01764	165.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023728_16	1121334.KB911071_gene1966	53.9	0.0000000167	N/A	N/A
KOfam	UHGV-0023728_18	K19304	109.7	3.7e-32	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0023728_18	phrog_7767	100.1	1.4e-29	metallo-endopeptidase	other
UniRef90	UHGV-0023728_18	UniRef90_A0A353WR18	80.5	0.000000000000375	Metalloendopeptidase	N/A
eggNOG-mapper	UHGV-0023728_18	1449126.JQKL01000043_gene1877	104.0	2.36e-23	Peptidase family M23	N/A
Pfam	UHGV-0023728_18	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0023728_18	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0023728_18	PF01551,PF09992,NF040883,COG0739,COG3698	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_19	phrog_4105	76.9	2.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0023728_19	537013.CLOSTMETH_01753	60.8	0.000000000113	N/A	N/A
KOfam	UHGV-0023728_21	K03986	41.0	0.000000000013	C1QA; complement C1q subcomponent subunit A	N/A
PHROG	UHGV-0023728_21	phrog_5073	50.5	0.000000000000026	tail fiber protein	tail
Pfam	UHGV-0023728_21	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
eggNOG-mapper	UHGV-0023728_27	1449126.JQKL01000002_gene1688	84.7	0.00000000000000966	N/A	N/A
structural_annotation	UHGV-0023728_27	PF11134,NF038128,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023728_28	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_30	phrog_14242	94.5	8.1e-28	major head protein	head and packaging
UniRef90	UHGV-0023728_30	UniRef90_A0A3D2CI53	324.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0023728_30	935948.KE386495_gene2267	59.3	0.000000922	N/A	N/A
NCBIFam	UHGV-0023728_30	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0023728_30	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_32	phrog_156	106.2	2.9e-31	portal protein	head and packaging
eggNOG-mapper	UHGV-0023728_32	588581.Cpap_1526	282.0	0	N/A	N/A
structural_annotation	UHGV-0023728_32	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0023728_35	K06909	288.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0023728_35	phrog_3717	201.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0023728_35	UniRef90_A0A329MU22	442.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0023728_35	696281.Desru_1088	435.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0023728_35	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0023728_35	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0023728_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0023728_35	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_36	phrog_59	126.2	1.7e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023728_36	UniRef90_UPI001BAE4E8F	156.0	1.4013e-45	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023728_36	749413.E5DV63_9VIRU	86.3	2.53e-18	HNH endonuclease	N/A
PADLOC	UHGV-0023728_36	HEase_00016	74.5	2.8e-21	homing endonuclease	RM
Pfam	UHGV-0023728_36	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0023728_36	PF07463,PF02796,TIGR04381,COG5606	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_37	phrog_606	51.7	0.000000000000014	terminase small subunit	head and packaging
Pfam	UHGV-0023728_37	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0023728_37	PF16677	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023728_42	PF01381,NF040522,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_43	phrog_3292	46.9	0.00000000000038	N/A	unknown function
UniRef90	UHGV-0023728_43	UniRef90_UPI00132E7586	50.4	0.00000368	KTSC domain-containing protein	N/A
eggNOG-mapper	UHGV-0023728_43	1117319.PSPO_09654	61.2	0.00000000168	KTSC domain	N/A
Pfam	UHGV-0023728_43	PF13619	N/A	N/A	KTSC domain	KTSC
COG	UHGV-0023728_43	COG1190	N/A	N/A	Lysyl-tRNA synthetase (class II)	N/A
structural_annotation	UHGV-0023728_43	PF13619	N/A	N/A	N/A	N/A
KOfam	UHGV-0023728_48	K07729	55.4	0.0000000000000013	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0023728_48	phrog_3	50.8	0.000000000000068	transcriptional repressor	transcription regulation
UniRef90	UHGV-0023728_48	UniRef90_UPI000E31F980	55.8	0.000000205	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0023728_48	1316408.HSISM1_2145	50.4	0.00000306	Transcriptional	N/A
PADLOC	UHGV-0023728_48	retron_type_VI_hth_cluster2_1	44.1	0.0000000000049	N/A	Retron
Pfam	UHGV-0023728_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023728_48	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0023728_48	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0023728_49	K22300	63.2	5.9e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0023728_49	phrog_8	51.6	0.000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023728_49	UniRef90_R6HTL1	100.0	9.08e-25	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0023728_49	397290.C810_05152	99.8	1.93e-25	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0023728_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023728_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023728_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_57	phrog_14970	243.8	0	N/A	unknown function
UniRef90	UHGV-0023728_57	UniRef90_UPI00164BFA28	215.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0023728_57	411470.RUMGNA_02193	186.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0023728_57	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0023728_57	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0023728_57	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_59	phrog_2205	112.5	2.6e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023728_59	UniRef90_UPI001E2B9DFF	75.1	0.0000000000000987	host-nuclease inhibitor Gam family protein	N/A
eggNOG-mapper	UHGV-0023728_59	1519439.JPJG01000051_gene723	72.0	0.000000000000517	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-0023728_59	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
structural_annotation	UHGV-0023728_59	PF07352	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_60	phrog_72	52.1	0.0000000000000049	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023728_60	UniRef90_A0A8D9PDS2	162.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0023728_60	445972.ANACOL_01825	127.0	7.93e-35	N/A	N/A
structural_annotation	UHGV-0023728_60	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_61	phrog_270	101.3	1.2e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0023728_61	941770.GL622178_gene367	90.5	5.24e-19	Replication initiation and membrane attachment	N/A
COG	UHGV-0023728_61	COG3756	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_62	phrog_9804	108.5	6.3e-32	N/A	unknown function
UniRef90	UHGV-0023728_62	UniRef90_A0A3D1LDS2	109.0	1.14e-26	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0023728_62	1499683.CCFF01000013_gene503	83.6	2.51e-17	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0023728_62	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0023728_62	PF11417	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023728_68	UniRef90_R6PXV8	70.9	0.000000000000105	Putative peptidase U32	N/A
PHROG	UHGV-0023728_73	phrog_757	189.4	0	DNA methyltransferase	other
UniRef90	UHGV-0023728_73	UniRef90_A0A374BFJ7	255.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0023728_73	748224.HMPREF9436_03069	231.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0023728_73	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0023728_73	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
Pfam	UHGV-0023728_76	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-0023728_76	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0023728_76	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_77	phrog_774	44.2	0.0000000000036	N/A	unknown function
KOfam	UHGV-0023728_80	K01520	131.7	6.3e-39	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0023728_80	phrog_135	123.3	1.5e-36	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023728_80	UniRef90_A0A3D3Y5Q7	150.0	4.48416e-44	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0023728_80	1282887.AUJG01000016_gene1113	141.0	3.19e-40	N/A	N/A
Pfam	UHGV-0023728_80	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0023728_80	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0023728_80	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0023728_80	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_82	phrog_474	100.1	3.6e-29	phosphofructokinase	other
UniRef90	UHGV-0023728_82	UniRef90_UPI00103054B4	91.7	6.86e-22	N/A	N/A
eggNOG-mapper	UHGV-0023728_82	1095750.HMPREF9970_1026	84.3	9.22e-20	N/A	N/A
Pfam	UHGV-0023728_82	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0023728_82	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-0023728_83	K01160	47.3	0.00000000000054	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0023728_83	phrog_4632	52.4	3.5e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023728_83	UniRef90_A0A7X8IB41	116.0	3.82e-31	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0023728_83	469604.HMPREF0946_00819	56.2	0.0000000203	N/A	N/A
structural_annotation	UHGV-0023728_83	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0023728_84	K03111	136.6	2.8e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0023728_84	phrog_44	135.4	2.1e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023728_84	UniRef90_R5QD10	141.0	6.12e-40	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0023728_84	445972.ANACOL_04434	129.0	6.79e-36	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0023728_84	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0023728_84	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0023728_84	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0023728_84	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0023728_84	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0023728_87	phrog_22978	291.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0023728_87	1321782.HMPREF1986_00356	246.0	0	N/A	N/A
Pfam	UHGV-0023728_87	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
structural_annotation	UHGV-0023728_87	PF18814	N/A	N/A	N/A	N/A