UHGV-0023818 (vOTU-043480)

Viral Genome: UHGV-0023818

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0023818
vOTU ID	vOTU-043480
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_M_20_1921__NODE_1064_length_43679_cov_77.928788
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.36
Jumbo phage	No

Genome content
Genome length (bp)	43,602
GC content	57.55%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	94%
Average CDS length (bps)	653.62
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0023818_1	K14059	94.9	1.2e-27	int; integrase	N/A
PHROG	UHGV-0023818_1	phrog_1	123.0	2.6e-36	integrase	integration and excision
UniRef90	UHGV-0023818_1	UniRef90_UPI00195CC1EE	446.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0023818_1	411471.SUBVAR_05816	120.0	2.15e-28	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0023818_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0023818_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0023818_1	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
COG	UHGV-0023818_2	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0023818_2	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0023818_3	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0023818_3	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
KOfam	UHGV-0023818_6	K22300	52.5	0.00000000000001	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0023818_6	phrog_4	44.8	0.0000000000028	transcriptional repressor	transcription regulation
UniRef90	UHGV-0023818_6	UniRef90_K1UM29	86.3	1.2e-18	Helix-turn-helix domain protein (Fragment)	N/A
eggNOG-mapper	UHGV-0023818_6	1235793.C809_03587	68.6	0.000000000000564	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0023818_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023818_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023818_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023818_7	PF10827	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023818_9	PF14120	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023818_11	1235835.C814_03153	64.7	0.000000000000577	N/A	N/A
structural_annotation	UHGV-0023818_11	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0023818_15	phrog_2113	50.5	0.000000000000018	N/A	unknown function
UniRef90	UHGV-0023818_15	UniRef90_A0A8D9UH91	110.0	3.34e-27	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0023818_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0023818_15	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0023818_18	phrog_7838	124.1	1.1e-36	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023818_18	UniRef90_A0A8D9UGW3	189.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0023818_18	742767.HMPREF9456_02052	162.0	0	N/A	N/A
structural_annotation	UHGV-0023818_18	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-0023818_19	K03111	137.0	2.1e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0023818_19	phrog_44	136.8	1.4e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023818_19	UniRef90_R6IDK3	174.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0023818_19	1007096.BAGW01000023_gene151	165.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0023818_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0023818_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0023818_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0023818_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0023818_19	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0023818_20	phrog_270	98.8	6.7e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023818_20	UniRef90_UPI000F4ADF08	113.0	1.25e-26	phage replication protein	N/A
eggNOG-mapper	UHGV-0023818_20	1449126.JQKL01000046_gene2061	112.0	4.96e-27	N/A	N/A
structural_annotation	UHGV-0023818_20	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-0023818_21	phrog_9804	126.2	2.3e-37	N/A	unknown function
UniRef90	UHGV-0023818_21	UniRef90_A0A174S716	171.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0023818_21	585394.RHOM_14005	118.0	4.69e-31	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-0023818_21	cluster_137185	118.0	4.84e-36	NA	N/A
structural_annotation	UHGV-0023818_21	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0023818_22	phrog_72	48.0	0.0000000000001	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023818_22	UniRef90_A0A2Z4Q9W9	130.0	2.34e-35	NinB	N/A
eggNOG-mapper	UHGV-0023818_22	445972.ANACOL_01825	82.8	1.5e-17	N/A	N/A
structural_annotation	UHGV-0023818_22	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0023818_23	phrog_1384	107.3	1.3e-31	Mom-like DNA modification protein	other
UniRef90	UHGV-0023818_23	UniRef90_W1I6Y1	167.0	0	Uncultured bacterium extrachromosomal DNA RGI01389	N/A
eggNOG-mapper	UHGV-0023818_23	1235797.C816_01664	186.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0023818_23	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0023818_24	phrog_7566	69.9	2.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0023818_24	693746.OBV_25470	68.2	0.000000000000215	N/A	N/A
KOfam	UHGV-0023818_25	K21919	100.3	1.3e-29	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0023818_25	phrog_923	92.5	2.5e-27	N/A	unknown function
UniRef90	UHGV-0023818_25	UniRef90_UPI001A9B9B76	151.0	2.21405e-43	pentapeptide repeat-containing protein	N/A
Pfam	UHGV-0023818_25	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
structural_annotation	UHGV-0023818_25	PF13599,NF000421,COG1357	N/A	N/A	N/A	N/A
PHROG	UHGV-0023818_26	phrog_757	52.2	0.0000000000000093	DNA methyltransferase	other
UniRef90	UHGV-0023818_26	UniRef90_A0A7J2R6L5	71.2	0.00000000000000213	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0023818_26	748224.HMPREF9436_03069	94.0	3.11e-23	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0023818_26	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0023818_27	phrog_757	120.7	8.7e-36	DNA methyltransferase	other
UniRef90	UHGV-0023818_27	UniRef90_A0A417JTT5	176.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0023818_27	1095750.HMPREF9970_0173	187.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0023818_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0023818_30	phrog_924	50.7	0.000000000000034	N/A	unknown function
UniRef90	UHGV-0023818_30	UniRef90_A0A316RLR0	53.1	0.00000144	N/A	N/A
Pfam	UHGV-0023818_30	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0023818_36	phrog_190	121.6	5.7e-36	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023818_36	UniRef90_UPI000367648A	113.0	5.9e-30	N/A	N/A
eggNOG-mapper	UHGV-0023818_36	445974.CLORAM_02947	115.0	5.56e-32	N/A	N/A
Pfam	UHGV-0023818_36	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0023818_36	PF06356	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023818_38	UniRef90_A0A3C0NNN3	78.2	0.00000000000000331	HTH psq-type domain-containing protein	N/A
KOfam	UHGV-0023818_39	K06909	104.3	1.4e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0023818_39	phrog_979	220.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0023818_39	UniRef90_A0A2V2CDD6	798.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0023818_39	411483.FAEPRAA2165_01044	558.0	0	Terminase-like family	N/A
Pfam	UHGV-0023818_39	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0023818_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0023818_39	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
Pfam	UHGV-0023818_40	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-0023818_40	PF05534,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-0023818_42	phrog_156	286.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0023818_42	1410650.JHWL01000003_gene2833	518.0	0	N/A	N/A
structural_annotation	UHGV-0023818_42	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0023818_43	K07584	47.1	0.00000000000043	N/A	N/A
PHROG	UHGV-0023818_43	phrog_4478	51.8	0.000000000000011	peptidase	other
UniRef90	UHGV-0023818_43	UniRef90_A0A7C6WRZ1	58.9	0.00000000222	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0023818_43	718252.FP2_29210	49.7	0.00000916	Cysteine protease Prp	N/A
Pfam	UHGV-0023818_43	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0023818_43	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023818_43	PF04327,NF011132,COG2868	N/A	N/A	N/A	N/A
KOfam	UHGV-0023818_44	K13925	51.5	0.0000000000000059	pfbA; plasmin and fibronectin-binding protein A	N/A
PHROG	UHGV-0023818_44	phrog_372	126.2	1.4e-37	tail protein	tail
eggNOG-mapper	UHGV-0023818_44	176275.XP_008597332.1	63.9	0.000000291	Glucan 1,3-beta-glucosidase	N/A
Pfam	UHGV-0023818_44	PF05895	N/A	N/A	N/A	DUF859
Pfam	UHGV-0023818_44	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
eggNOG-mapper	UHGV-0023818_45	1410650.JHWL01000003_gene2815	69.7	0.000000000292	N/A	N/A
PHROG	UHGV-0023818_46	phrog_22978	717.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0023818_46	1321782.HMPREF1986_00356	198.0	0	N/A	N/A
Pfam	UHGV-0023818_46	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
PHROG	UHGV-0023818_47	phrog_13908	116.7	1.4e-34	N/A	unknown function
PHROG	UHGV-0023818_48	phrog_1357	198.6	0	major head protein	head and packaging
UniRef90	UHGV-0023818_48	UniRef90_A0A3C0NPN1	583.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0023818_48	1410650.JHWL01000003_gene2830	265.0	0	N/A	N/A
NCBIFam	UHGV-0023818_48	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0023818_48	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0023818_49	phrog_15239	51.8	0.000000000000013	N/A	unknown function
PHROG	UHGV-0023818_50	phrog_12105	113.4	1.4e-33	N/A	unknown function
eggNOG-mapper	UHGV-0023818_50	1519439.JPJG01000060_gene1891	76.6	2.44e-16	N/A	N/A
PHROG	UHGV-0023818_51	phrog_511	229.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0023818_51	1410650.JHWL01000003_gene2827	308.0	0	N/A	N/A
structural_annotation	UHGV-0023818_51	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0023818_56	phrog_30034	112.0	6.5e-33	N/A	unknown function
UniRef90	UHGV-0023818_56	UniRef90_A0A3D1XGA4	158.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023818_56	411471.SUBVAR_06976	108.0	2.44e-28	N/A	N/A
Pfam	UHGV-0023818_56	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0023818_57	phrog_1493	57.6	2.7e-16	endolysin	lysis
UniRef90	UHGV-0023818_57	UniRef90_A0A1C6GMR6	194.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0023818_57	871963.Desdi_1346	116.0	1.17e-27	NLP P60 protein	N/A
Pfam	UHGV-0023818_57	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0023818_57	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0023818_57	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0023818_58	phrog_937	68.8	8.8e-20	hemolysin	other
eggNOG-mapper	UHGV-0023818_58	1519439.JPJG01000023_gene533	91.7	7.11e-23	N/A	N/A
PHROG	UHGV-0023818_59	phrog_1129	69.2	4.2e-20	holin	lysis
UniRef90	UHGV-0023818_59	UniRef90_A0A2V2CUX8	127.0	8.35e-37	Enolase	N/A
eggNOG-mapper	UHGV-0023818_59	1226322.HMPREF1545_00069	118.0	7.18e-34	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0023818_59	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0023818_59	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023818_60	UniRef90_A0A8D9PDT6	83.2	4e-19	Transcriptional regulatory protein	N/A
UniRef90	UHGV-0023818_63	UniRef90_A0A843GWV6	86.3	6.98e-20	Rubrerythrin domain-containing protein	N/A
Pfam	UHGV-0023818_63	PF02915	N/A	N/A	Rubrerythrin	Rubrerythrin
structural_annotation	UHGV-0023818_63	PF02255,NF007156,COG1447	N/A	N/A	N/A	N/A