UHGV-0023884 (vOTU-043488)

Viral Genome: UHGV-0023884

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0023884
vOTU ID	vOTU-043488
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_7_2143__NODE_2828_length_40116_cov_5.923125
Associated BioSample	SAMEA4766166
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.21
Jumbo phage	No

Genome content
Genome length (bp)	40,057
GC content	56.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	94%
Average CDS length (bps)	673.66
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0023884_1	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0023884_2	K01447	97.5	1.9e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0023884_2	phrog_670	118.0	9.2e-35	endolysin	lysis
UniRef90	UHGV-0023884_2	UniRef90_A0A3D4VSU2	149.0	3.06002e-41	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0023884_2	1203606.HMPREF1526_00589	84.0	6.68e-17	Ami_2	N/A
Pfam	UHGV-0023884_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0023884_2	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0023884_2	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0023884_3	phrog_6918	95.2	4.6e-28	holin	lysis
UniRef90	UHGV-0023884_3	UniRef90_G9YP36	107.0	6.2e-28	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-0023884_3	1297617.JPJD01000020_gene301	98.6	2.22e-25	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0023884_3	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0023884_3	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0023884_5	phrog_937	56.7	5.1e-16	hemolysin	other
eggNOG-mapper	UHGV-0023884_5	1519439.JPJG01000023_gene533	72.8	0.00000000000000178	N/A	N/A
PHROG	UHGV-0023884_8	phrog_29409	43.7	0.0000000000034	N/A	unknown function
UniRef90	UHGV-0023884_8	UniRef90_UPI001A9AA1DC	70.9	0.000000000000511	isoaspartyl peptidase	N/A
PHROG	UHGV-0023884_9	phrog_37900	308.5	0	N/A	unknown function
UniRef90	UHGV-0023884_9	UniRef90_UPI001C3EA4DF	416.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023884_9	552398.HMPREF0866_03098	244.0	0	N/A	N/A
Pfam	UHGV-0023884_9	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0023884_9	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0023884_9	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0023884_10	K19719	123.6	3.4e-37	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0023884_10	phrog_819	83.7	2.49431e-43	tail protein	tail
eggNOG-mapper	UHGV-0023884_10	1519439.JPJG01000060_gene1892	113.0	1.27e-24	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0023884_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0023884_10	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0023884_11	PF18962,NF011773	N/A	N/A	N/A	N/A
PHROG	UHGV-0023884_12	phrog_33872	55.3	4.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-0023884_12	693746.OBV_19740	64.7	0.00000000000315	N/A	N/A
PHROG	UHGV-0023884_13	phrog_22978	109.8	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0023884_13	1408437.JNJN01000039_gene389	494.0	0	heme binding	N/A
Pfam	UHGV-0023884_13	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-0023884_13	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
eggNOG-mapper	UHGV-0023884_14	1410650.JHWL01000003_gene2815	126.0	1.48e-29	N/A	N/A
PHROG	UHGV-0023884_15	phrog_12105	110.8	9.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0023884_15	1519439.JPJG01000060_gene1891	70.5	0.0000000000000701	N/A	N/A
PHROG	UHGV-0023884_16	phrog_15239	41.6	0.000000000018	N/A	unknown function
PHROG	UHGV-0023884_17	phrog_1357	218.1	0	major head protein	head and packaging
UniRef90	UHGV-0023884_17	UniRef90_A0A2V2CFL5	377.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0023884_17	1410650.JHWL01000003_gene2830	289.0	0	N/A	N/A
Pfam	UHGV-0023884_17	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0023884_17	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0023884_17	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0023884_18	phrog_13908	126.0	2.7e-37	N/A	unknown function
eggNOG-mapper	UHGV-0023884_18	1410650.JHWL01000003_gene2831	94.0	1.8e-19	N/A	N/A
PHROG	UHGV-0023884_19	phrog_156	305.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0023884_19	1410650.JHWL01000003_gene2833	541.0	0	N/A	N/A
structural_annotation	UHGV-0023884_19	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023884_21	537007.BLAHAN_05255	82.0	0.0000000000000699	N/A	N/A
PHROG	UHGV-0023884_22	phrog_511	241.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0023884_22	1410650.JHWL01000003_gene2827	298.0	0	N/A	N/A
structural_annotation	UHGV-0023884_22	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
KOfam	UHGV-0023884_23	K06909	144.3	1.00053e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0023884_23	phrog_979	140.8	3.09687e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0023884_23	UniRef90_A0A810Q5R0	634.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0023884_23	1410650.JHWL01000003_gene2834	608.0	0	N/A	N/A
Pfam	UHGV-0023884_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0023884_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0023884_23	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0023884_24	phrog_606	68.6	1e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0023884_24	UniRef90_UPI001D0F42E6	137.0	8.23e-39	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0023884_24	397290.C810_05185	124.0	4.72e-34	DNA-packaging protein gp3	N/A
Pfam	UHGV-0023884_24	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
PHROG	UHGV-0023884_26	phrog_3584	117.6	8.7e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0023884_26	537013.CLOSTMETH_02141	85.5	1.24e-17	N/A	N/A
structural_annotation	UHGV-0023884_26	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0023884_30	phrog_599	42.5	0.000000000013	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0023884_30	UniRef90_R6QWY1	112.0	1.56e-30	28	N/A
dbAPIS	UHGV-0023884_30	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0023884_31	phrog_31029	66.9	2.2e-19	N/A	unknown function
PHROG	UHGV-0023884_32	phrog_2118	94.1	1.8e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023884_32	UniRef90_A0A417HX51	197.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0023884_32	1511.CLOST_1546	117.0	2.9e-32	HNH endonuclease	N/A
Pfam	UHGV-0023884_32	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0023884_32	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0023884_32	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0023884_33	phrog_38832	67.8	3.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0023884_33	665956.HMPREF1032_03087	56.6	0.0000000573	N/A	N/A
structural_annotation	UHGV-0023884_33	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0023884_34	phrog_5781	79.1	5.5e-23	N/A	unknown function
UniRef90	UHGV-0023884_34	UniRef90_A0A2V2GDQ1	116.0	6.84e-32	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0023884_34	573061.Clocel_3558	95.9	2.47e-24	N/A	N/A
Pfam	UHGV-0023884_34	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0023884_34	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0023884_34	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0023884_38	K00571	101.8	8.3e-30	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0023884_38	phrog_23224	179.9	0	DNA methyltransferase	other
UniRef90	UHGV-0023884_38	UniRef90_A0A329TLK1	355.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0023884_38	718252.FP2_06750	354.0	0	DNA methylase	N/A
PADLOC	UHGV-0023884_38	MTase_II_00172	97.5	1.5e-30	Type II methyltransferase	RM
Pfam	UHGV-0023884_38	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0023884_38	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0023884_38	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0023884_42	phrog_190	114.8	6.5e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023884_42	UniRef90_A0A4D7AZG9	123.0	1.49e-33	N/A	N/A
eggNOG-mapper	UHGV-0023884_42	1226322.HMPREF1545_00295	120.0	3.01e-32	N/A	N/A
Pfam	UHGV-0023884_42	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0023884_42	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0023884_49	K22300	59.7	6.9e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0023884_49	phrog_8	50.9	0.000000000000038	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023884_49	UniRef90_A0A174AZ53	95.1	9.22e-23	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-0023884_49	411902.CLOBOL_06332	55.5	0.000000129	sequence-specific DNA binding	N/A
Pfam	UHGV-0023884_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023884_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023884_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0023884_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0023884_52	PF12844,MF_00535,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0023884_53	K06400	339.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0023884_53	phrog_95	335.3	0	integrase	integration and excision
UniRef90	UHGV-0023884_53	UniRef90_G4KP73	464.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-0023884_53	693746.OBV_21880	464.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0023884_53	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0023884_53	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0023884_53	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0023884_53	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0023884_53	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023884_54	UniRef90_A0A7M1RRU0	75.9	0.0000000000000478	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0023884_54	1378168.N510_03079	63.2	0.000000000918	N/A	N/A