UHGV-0023888 (vOTU-043489)

Viral Genome: UHGV-0023888

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0023888
vOTU ID	vOTU-043489
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_7_2143__NODE_2762_length_40686_cov_180.823537
Associated BioSample	SAMEA4766166
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9792
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.39
Jumbo phage	No

Genome content
Genome length (bp)	40,617
GC content	51.97%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	86%
Average CDS length (bps)	585.35
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0023888_2	phrog_1770	103.9	1.6e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023888_2	UniRef90_A0A1L8CM45	103.0	2.55e-25	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0023888_2	994601.G9BW80_9CAUD	99.8	1.17e-24	nucleic acid binding	N/A
structural_annotation	UHGV-0023888_2	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_3	phrog_2562	109.1	5.6e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023888_3	UniRef90_A0A2Z4Q9Z3	195.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023888_3	290402.Cbei_1623	142.0	3.38e-38	N/A	N/A
Pfam	UHGV-0023888_3	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0023888_3	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0023888_4	PF08962	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_6	phrog_561	129.6	8e-39	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023888_6	UniRef90_A0A174RC35	229.0	0	RecT family	N/A
eggNOG-mapper	UHGV-0023888_6	33035.JPJF01000071_gene4462	156.0	2.8026e-45	N/A	N/A
Pfam	UHGV-0023888_6	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0023888_6	PF03837,TIGR01913	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_8	phrog_298	83.0	8.2e-25	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023888_8	UniRef90_A0A1C5T0L2	89.0	2.64e-18	PD-(D/E)XK nuclease superfamily	N/A
eggNOG-mapper	UHGV-0023888_8	1218075.BAYA01000003_gene606	77.0	0.0000000000000125	N/A	N/A
structural_annotation	UHGV-0023888_8	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023888_12	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0023888_13	K22300	53.3	0.0000000000000066	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0023888_13	phrog_7241	41.3	0.000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023888_13	UniRef90_A0A644YPM1	63.2	0.0000000000135	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0023888_13	411467.BACCAP_02820	49.7	0.00000731	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0023888_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023888_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0023888_14	phrog_8	43.9	1.4e-23	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0023888_14	536232.CLM_2628	57.4	0.0000000135	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0023888_14	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-0023888_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023888_14	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0023888_17	246199.CUS_7007	55.1	0.00000167	N/A	N/A
structural_annotation	UHGV-0023888_18	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023888_19	UniRef90_A0A415YMQ8	89.4	7.06e-21	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023888_19	585202.SMSK321_0674	68.9	0.0000000000000775	N/A	N/A
Pfam	UHGV-0023888_19	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
KOfam	UHGV-0023888_20	K14059	99.1	7.5e-29	int; integrase	N/A
PHROG	UHGV-0023888_20	phrog_1	112.0	7.1e-33	integrase	integration and excision
UniRef90	UHGV-0023888_20	UniRef90_A0A3D2G173	318.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0023888_20	641112.ACOK01000111_gene1860	107.0	1.5e-23	Phage integrase family	N/A
Pfam	UHGV-0023888_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0023888_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0023888_20	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023888_21	UniRef90_A0A7M1RRU0	64.3	0.00000000129	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0023888_21	1408437.JNJN01000043_gene801	70.9	0.000000000000691	N/A	N/A
structural_annotation	UHGV-0023888_24	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_25	phrog_32772	109.2	1.6e-32	N/A	unknown function
structural_annotation	UHGV-0023888_25	NF010188,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_26	phrog_15863	154.1	0	N/A	unknown function
UniRef90	UHGV-0023888_26	UniRef90_A0A1Y3R3M0	230.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0023888_26	693746.OBV_01780	174.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0023888_26	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
PHROG	UHGV-0023888_27	phrog_979	48.9	0.000000000000074	terminase large subunit	head and packaging
UniRef90	UHGV-0023888_27	UniRef90_K1TA53	123.0	4.42e-33	Phage terminase, large subunit, PBSX (Fragment)	N/A
eggNOG-mapper	UHGV-0023888_27	693746.OBV_01690	129.0	6.52e-34	phage Terminase large subunit	N/A
COG	UHGV-0023888_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-0023888_28	phrog_374	157.3	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023888_28	UniRef90_A0A6L8SWJ4	141.0	5.15e-39	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023888_28	742767.HMPREF9456_02044	150.0	2.11596e-43	N/A	N/A
PHROG	UHGV-0023888_29	phrog_5653	42.1	0.00000000000067	terminase large subunit	head and packaging
UniRef90	UHGV-0023888_29	UniRef90_A0A1Y3RJJ5	234.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023888_29	693746.OBV_01690	212.0	0	phage Terminase large subunit	N/A
COG	UHGV-0023888_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0023888_29	PF20441,MF_04148,TIGR01547,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_31	phrog_156	93.2	8.7e-29	portal protein	head and packaging
eggNOG-mapper	UHGV-0023888_31	693746.OBV_01670	540.0	0	N/A	N/A
structural_annotation	UHGV-0023888_31	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_33	phrog_422	124.5	7.8e-37	major head protein	head and packaging
UniRef90	UHGV-0023888_33	UniRef90_A0A8J6JH37	293.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0023888_33	693746.OBV_01700	216.0	0	N/A	N/A
Pfam	UHGV-0023888_33	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0023888_33	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_34	phrog_1863	66.0	3.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0023888_34	748224.HMPREF9436_01412	88.6	2.49e-22	N/A	N/A
PHROG	UHGV-0023888_35	phrog_1129	64.0	1.7e-18	holin	lysis
UniRef90	UHGV-0023888_35	UniRef90_A0A0D8J2M2	119.0	3.3e-33	Enolase	N/A
eggNOG-mapper	UHGV-0023888_35	665956.HMPREF1032_03272	116.0	8.89e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0023888_35	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0023888_35	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023888_36	1519439.JPJG01000011_gene57	127.0	1.11e-35	N/A	N/A
structural_annotation	UHGV-0023888_36	PF11650	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023888_37	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_38	phrog_5107	40.8	0.000000000017	amidase	lysis
UniRef90	UHGV-0023888_38	UniRef90_A0A4D7ASB8	501.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023888_38	1519439.JPJG01000011_gene54	517.0	0	N/A	N/A
structural_annotation	UHGV-0023888_38	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_39	phrog_28766	54.5	1e-25	tail fiber protein	tail
PHROG	UHGV-0023888_43	phrog_30034	114.3	1.4e-33	N/A	unknown function
UniRef90	UHGV-0023888_43	UniRef90_R6RWR8	144.0	1.03e-40	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-0023888_43	552398.HMPREF0866_03095	114.0	7.32e-30	N/A	N/A
Pfam	UHGV-0023888_43	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0023888_43	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_44	phrog_20388	84.7	1.1e-24	endolysin	lysis
UniRef90	UHGV-0023888_44	UniRef90_UPI00189D4A1D	105.0	1.12e-23	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0023888_44	1121296.JONJ01000026_gene2168	106.0	1.02e-23	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0023888_44	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0023888_44	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0023888_44	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0023888_44	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023888_46	UniRef90_A0A810QFN4	540.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023888_46	693746.OBV_01590	331.0	0	N/A	N/A
Pfam	UHGV-0023888_46	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
KOfam	UHGV-0023888_47	K07741	104.0	3.7e-30	antB; anti-repressor protein	N/A
PHROG	UHGV-0023888_47	phrog_130	171.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0023888_47	UniRef90_A0A1Y4RA31	301.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0023888_47	568816.Acin_1403	256.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0023888_47	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0023888_47	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0023888_47	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0023888_47	PF03374,PF02498,COG3645,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_49	phrog_3896	72.7	3.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0023888_49	397290.C810_01338	58.2	0.0000000000815	N/A	N/A
Pfam	UHGV-0023888_50	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
eggNOG-mapper	UHGV-0023888_52	1121405.dsmv_2591	57.8	0.0000000295	N/A	N/A
PHROG	UHGV-0023888_55	phrog_3136	123.9	6.4e-37	N/A	unknown function
UniRef90	UHGV-0023888_55	UniRef90_UPI001A9A8D4F	120.0	4.36e-31	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0023888_55	1007096.BAGW01000031_gene120	75.9	0.0000000000000284	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0023888_55	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0023888_55	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0023888_58	phrog_757	137.8	5.90003e-41	DNA methyltransferase	other
UniRef90	UHGV-0023888_58	UniRef90_A0A3R6ATD0	263.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0023888_58	742733.HMPREF9469_01835	257.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0023888_58	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0023888_59	phrog_757	51.6	0.000000000000014	DNA methyltransferase	other
UniRef90	UHGV-0023888_59	UniRef90_A0A7J2R6L5	70.9	0.00000000000000303	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0023888_59	748224.HMPREF9436_03069	93.6	4.39e-23	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0023888_59	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
dbAPIS	UHGV-0023888_60	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A