UHGV-0023889 (vOTU-043490)

Viral Genome: UHGV-0023889

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0023889
vOTU ID	vOTU-043490
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_7_2143__NODE_2830_length_40096_cov_15.109798
Associated BioSample	SAMEA4766166
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9715
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.65
Jumbo phage	No

Genome content
Genome length (bp)	40,019
GC content	57.12%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	96%
Average CDS length (bps)	797.25
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0023889_2	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0023889_3	phrog_511	252.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0023889_3	1410650.JHWL01000003_gene2827	365.0	0	N/A	N/A
structural_annotation	UHGV-0023889_3	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0023889_4	phrog_12105	124.3	5.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-0023889_4	1519439.JPJG01000060_gene1891	76.3	6.77e-16	N/A	N/A
PHROG	UHGV-0023889_6	phrog_1357	248.4	0	major head protein	head and packaging
UniRef90	UHGV-0023889_6	UniRef90_A0A2V2GQW4	366.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0023889_6	1449126.JQKL01000003_gene1695	347.0	0	N/A	N/A
NCBIFam	UHGV-0023889_6	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0023889_6	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0023889_7	phrog_13908	240.2	0	N/A	unknown function
UniRef90	UHGV-0023889_7	UniRef90_A0A844DRV7	124.0	3.28e-28	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0023889_7	1410650.JHWL01000003_gene2831	125.0	2.11e-30	N/A	N/A
KOfam	UHGV-0023889_8	K07584	57.9	2e-16	N/A	N/A
PHROG	UHGV-0023889_8	phrog_4478	50.2	0.000000000000035	peptidase	other
UniRef90	UHGV-0023889_8	UniRef90_A0A351PVD0	60.1	0.000000002	Ribosomal-processing cysteine protease Prp	N/A
Pfam	UHGV-0023889_8	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0023889_8	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023889_8	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0023889_9	phrog_156	315.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0023889_9	1410650.JHWL01000003_gene2833	585.0	0	N/A	N/A
structural_annotation	UHGV-0023889_9	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0023889_10	K06909	133.9	1.4e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0023889_10	phrog_979	131.9	1.3e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0023889_10	UniRef90_A0A2V2GR60	659.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0023889_10	1410650.JHWL01000003_gene2834	612.0	0	N/A	N/A
Pfam	UHGV-0023889_10	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0023889_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0023889_10	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023889_11	UniRef90_A0A3C0NNN3	61.2	0.00000000964	HTH psq-type domain-containing protein	N/A
PHROG	UHGV-0023889_16	phrog_190	107.9	9.6e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023889_16	UniRef90_A0A6N7XIA3	127.0	1.29e-35	N/A	N/A
eggNOG-mapper	UHGV-0023889_16	563031.HMPREF0666_01122	108.0	7.58e-29	N/A	N/A
Pfam	UHGV-0023889_16	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0023889_16	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0023889_19	phrog_236	88.5	1.4e-25	nucleotide kinase	other
UniRef90	UHGV-0023889_19	UniRef90_A0A6J7WC16	98.2	4.18e-25	SaV-like	N/A
eggNOG-mapper	UHGV-0023889_19	743719.PaelaDRAFT_2382	96.3	3.55e-22	sigma factor activity	N/A
Pfam	UHGV-0023889_19	PF11753	N/A	N/A	N/A	DUF3310
COG	UHGV-0023889_19	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
PHROG	UHGV-0023889_22	phrog_757	219.0	0	DNA methyltransferase	other
UniRef90	UHGV-0023889_22	UniRef90_A0A3E2U1Y9	218.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0023889_22	1235790.C805_00032	214.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0023889_22	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0023889_22	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023889_25	UniRef90_A0A098GES5	79.3	2.3e-17	Putative phage associated protein	N/A
structural_annotation	UHGV-0023889_25	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0023889_26	phrog_5968	111.4	6.1e-33	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023889_26	UniRef90_UPI0013D80EAC	127.0	4.2e-32	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0023889_26	469604.HMPREF0946_01101	125.0	5.83e-32	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0023889_26	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0023889_26	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0023889_26	PF09681,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0023889_27	K03111	79.7	6.1e-23	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0023889_27	phrog_44	79.3	7.6e-23	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023889_27	UniRef90_A0A2N1RY94	79.7	3.22e-16	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0023889_27	411471.SUBVAR_05834	76.3	0.00000000000000131	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0023889_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0023889_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0023889_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0023889_27	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0023889_29	K07455	170.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0023889_29	phrog_148	181.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023889_29	UniRef90_UPI0018C50A8E	318.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0023889_29	1444306.JFZC01000034_gene2656	208.0	0	Recombinational DNA repair protein (RecE pathway)	N/A
Pfam	UHGV-0023889_29	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0023889_29	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0023889_29	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0023889_29	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0023889_30	phrog_434	289.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023889_30	UniRef90_A0A3D3XZF3	350.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0023889_30	428125.CLOLEP_01823	254.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0023889_30	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0023889_30	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0023889_30	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0023889_30	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023889_37	UniRef90_F3BAG6	57.4	0.0000000017	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0023889_37	742723.HMPREF9477_00936	57.4	0.000000000286	Helix-turn-helix	N/A
Pfam	UHGV-0023889_37	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0023889_37	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0023889_38	phrog_8	46.9	0.00000000000058	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023889_38	UniRef90_UPI000B7F1453	53.5	0.000000648	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0023889_38	246199.CUS_5582	64.7	0.000000000052	sequence-specific DNA binding	N/A
Pfam	UHGV-0023889_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023889_38	COG1426	N/A	N/A	N/A	N/A
KOfam	UHGV-0023889_39	K22300	46.7	0.00000000000063	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0023889_39	phrog_8	53.9	0.0000000000000038	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023889_39	UniRef90_UPI00067EEC51	59.3	0.0000000162	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0023889_39	246199.CUS_5582	69.7	0.000000000000616	sequence-specific DNA binding	N/A
Pfam	UHGV-0023889_39	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0023889_39	COG1426	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023889_40	UniRef90_A0A354UMM3	56.2	0.000000127	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0023889_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023889_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023889_40	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0023889_41	K14059	145.1	8.50588e-43	int; integrase	N/A
PHROG	UHGV-0023889_41	phrog_1	153.0	2.8026e-45	integrase	integration and excision
UniRef90	UHGV-0023889_41	UniRef90_UPI00156FD0FD	225.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0023889_41	411473.RUMCAL_01506	204.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0023889_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0023889_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0023889_41	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0023889_43	K19304	99.9	2.1e-29	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0023889_43	phrog_14988	75.9	5e-22	peptidase	other
UniRef90	UHGV-0023889_43	UniRef90_UPI0008F7FEF1	62.4	0.000000198	peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0023889_43	604331.AUHY01000007_gene656	77.4	0.000000000000338	PFAM Peptidase family M23	N/A
Pfam	UHGV-0023889_43	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0023889_43	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-0023889_44	phrog_881	79.7	2.2e-23	holin	lysis
UniRef90	UHGV-0023889_44	UniRef90_A0A4Q7P349	96.3	9.23e-25	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0023889_44	742740.HMPREF9474_02251	95.1	4.81e-25	Putative phage holin Dp-1	N/A
Pfam	UHGV-0023889_44	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0023889_44	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0023889_46	phrog_22978	704.8	0	N/A	unknown function
UniRef90	UHGV-0023889_46	UniRef90_A0A1Y4WLF7	612.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023889_46	1410650.JHWL01000003_gene2814	369.0	0	N/A	N/A
Pfam	UHGV-0023889_46	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0023889_46	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
Pfam	UHGV-0023889_46	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UniRef90	UHGV-0023889_47	UniRef90_A0A3D2IB34	89.4	1.9e-16	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023889_47	1410650.JHWL01000003_gene2815	100.0	7.57e-21	N/A	N/A
PHROG	UHGV-0023889_48	phrog_372	171.2	0	tail protein	tail
UniRef90	UHGV-0023889_48	UniRef90_UPI001373A0FD	179.0	4.2039e-45	N/A	N/A
eggNOG-mapper	UHGV-0023889_48	445971.ANASTE_00089	129.0	1.42e-28	N/A	N/A
Pfam	UHGV-0023889_48	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0023889_48	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0023889_48	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A