UHGV-0023973 (vOTU-043501)

Viral Genome: UHGV-0023973

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0023973
vOTU ID	vOTU-043501
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_1_1731__NODE_1556_length_39503_cov_16.183103
Associated BioSample	SAMEA4766011
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9714
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.95
Jumbo phage	No

Genome content
Genome length (bp)	39,473
GC content	35.22%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	93%
Average CDS length (bps)	532.96
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0023973_4	563031.HMPREF0666_01114	107.0	1.55e-24	N/A	N/A
Pfam	UHGV-0023973_4	PF01030	N/A	N/A	Receptor L domain	Recep_L_domain
KOfam	UHGV-0023973_8	K17398	219.8	0	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	N/A
PHROG	UHGV-0023973_8	phrog_116	181.8	0	DNA methyltransferase	other
UniRef90	UHGV-0023973_8	UniRef90_A0A359IM62	275.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0023973_8	1444310.JANV01000096_gene3232	261.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0023973_8	MTase_II_00058	131.0	2.1e-39	Type II methyltransferase	RM
Pfam	UHGV-0023973_8	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0023973_8	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0023973_8	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0023973_8	PF00145,MF_02126,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0023973_10	phrog_98	72.0	8.3e-21	N/A	unknown function
UniRef90	UHGV-0023973_10	UniRef90_A0A416ZXS5	72.0	0.000000000000324	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0023973_10	536227.CcarbDRAFT_4985	63.2	0.0000000000735	YopX protein	N/A
Pfam	UHGV-0023973_10	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0023973_10	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
PHROG	UHGV-0023973_11	phrog_190	105.3	5.6e-31	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023973_11	UniRef90_A0A8A7U3F0	114.0	6.24e-31	N/A	N/A
eggNOG-mapper	UHGV-0023973_11	366394.Smed_1908	99.0	2.27e-25	N/A	N/A
Pfam	UHGV-0023973_11	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0023973_11	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0023973_12	phrog_111	80.5	2e-23	DNA methyltransferase	other
UniRef90	UHGV-0023973_12	UniRef90_R6PLI8	225.0	0	Putative phage N-6-adenine-methyltransferase	N/A
eggNOG-mapper	UHGV-0023973_12	320849.Q4ZAC6_9CAUD	89.0	1.48e-20	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0023973_12	oMTase_00015	72.2	1.3e-20	orphan methyltransferase	RM
Pfam	UHGV-0023973_12	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0023973_12	PF05869,MF_00607,TIGR01712,COG0030	N/A	N/A	N/A	N/A
KOfam	UHGV-0023973_17	K00558	45.3	0.00000000000076	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0023973_17	phrog_363	74.1	1.5e-21	DNA methyltransferase	other
UniRef90	UHGV-0023973_17	UniRef90_A0A316PER9	253.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0023973_17	742767.HMPREF9456_03404	204.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-0023973_17	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0023973_17	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0023973_17	PF01189,MF_02057,NF001556,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0023973_22	phrog_270	51.6	0.000000000000019	replication initiation protein	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0023973_22	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0023973_22	COG2188	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-0023973_22	PF13730,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023973_31	UniRef90_A0A8F0WEL0	87.4	3.81e-19	Putative peptidase/signaling protein	N/A
eggNOG-mapper	UHGV-0023973_31	1349822.NSB1T_07980	78.6	1.48e-16	N/A	N/A
structural_annotation	UHGV-0023973_31	PF08291,COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023973_32	NF007458	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023973_37	1121445.ATUZ01000011_gene713	158.0	6.51e-38	N/A	N/A
structural_annotation	UHGV-0023973_38	PF17790,NF011770	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023973_45	PF11039,MF_02210,NF008072,COG1247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023973_47	PF11134,MF_00923,NF000022,COG4257	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023973_48	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0023973_50	phrog_267	103.9	1.7e-30	major head protein	head and packaging
UniRef90	UHGV-0023973_50	UniRef90_UPI00040C2EA7	153.0	3.20995e-41	phage capsid protein	N/A
eggNOG-mapper	UHGV-0023973_50	1280706.AUJE01000003_gene2259	153.0	5.38939e-42	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-0023973_50	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0023973_53	phrog_332	75.0	1.4e-22	head-tail adaptor	connector
structural_annotation	UHGV-0023973_53	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0023973_55	K06909	206.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0023973_55	phrog_3717	173.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0023973_55	UniRef90_A0A1Q6U4X6	320.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023973_55	1127515.H9C0L8_9CAUD	129.0	1.58e-30	Pfam:Terminase_3C	N/A
Pfam	UHGV-0023973_55	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0023973_55	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
structural_annotation	UHGV-0023973_55	PF04466,PF17289,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0023973_58	phrog_29674	65.5	6.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0023973_58	13689.BV96_01065	69.3	0.0000000000000114	N/A	N/A
KOfam	UHGV-0023973_60	K01356	62.4	1.1e-17	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0023973_60	phrog_4	77.5	2.5e-22	transcriptional repressor	transcription regulation
UniRef90	UHGV-0023973_60	UniRef90_A0A292QUL5	149.0	6.6898e-42	Peptidase_S24 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023973_60	1263831.F543_6160	56.6	0.000000505	Mu DNA-binding domain	N/A
Pfam	UHGV-0023973_60	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0023973_60	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0023973_60	PF00717,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0023973_67	phrog_155	65.9	7.2e-19	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023973_67	UniRef90_R6PLH2	166.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-0023973_67	1095743.HMPREF1054_1927	119.0	2.79e-31	ERF superfamily	N/A
Pfam	UHGV-0023973_67	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0023973_67	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0023973_68	K03111	93.7	3.3e-27	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0023973_68	phrog_44	84.7	1.7e-24	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023973_68	UniRef90_R6PML2	107.0	1.46e-27	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0023973_68	759914.BP951000_0954	83.2	1.42e-18	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0023973_68	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0023973_68	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0023973_68	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0023973_68	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0023973_68	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0023973_69	phrog_16304	59.5	7.7e-17	N/A	unknown function
UniRef90	UHGV-0023973_69	UniRef90_UPI0012304DB7	61.2	0.00000000402	N/A	N/A
eggNOG-mapper	UHGV-0023973_69	1158294.JOMI01000009_gene1122	81.6	2.76e-17	N/A	N/A
Pfam	UHGV-0023973_69	PF19808	N/A	N/A	N/A	DUF6291