UHGV-0024079 (vOTU-144633)

Viral Genome: UHGV-0024079

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0024079
vOTU ID	vOTU-144633
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_3_1732__NODE_2450_length_28972_cov_67.509881
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.98 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9781
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.64
Jumbo phage	No

Genome content
Genome length (bp)	28,972
GC content	51.03%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	91%
Average CDS length (bps)	507.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0024079_1	UniRef90_A0A2A7ALS3	513.0	0	TMP_3 domain-containing protein	N/A
COG	UHGV-0024079_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0024079_2	phrog_33	81.9	1.3e-23	distal tail protein Dit	tail
UniRef90	UHGV-0024079_2	UniRef90_A0A173Z1X4	144.0	4.9e-39	Phage-related protein	N/A
eggNOG-mapper	UHGV-0024079_2	908340.HMPREF9406_2569	95.1	6.44e-21	phage tail	N/A
NCBIFam	UHGV-0024079_2	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0024079_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0024079_2	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0024079_3	phrog_1067	175.2	0	minor head protein	head and packaging
UniRef90	UHGV-0024079_3	UniRef90_A0A2A7AM44	709.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0024079_3	1123263.AUKY01000068_gene489	188.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0024079_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0024079_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0024079_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0024079_3	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0024079_5	K21478	56.9	2.3e-18	icaB; poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase [EC:3.5.1.-]	N/A
eggNOG-mapper	UHGV-0024079_5	500635.MITSMUL_05561	58.2	0.00000415	Polysaccharide deacetylase	N/A
Pfam	UHGV-0024079_5	PF01522	N/A	N/A	Polysaccharide deacetylase	Polysacc_deac_1
COG	UHGV-0024079_5	COG0726	N/A	N/A	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	N/A
KOfam	UHGV-0024079_6	K07273	173.8	0	acm; lysozyme	N/A
PHROG	UHGV-0024079_6	phrog_291	132.5	3.6e-39	endolysin	lysis
UniRef90	UHGV-0024079_6	UniRef90_UPI001D0EE7D8	308.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0024079_6	748224.HMPREF9436_00154	285.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0024079_6	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0024079_6	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0024079_6	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0024079_7	phrog_1863	69.2	3.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0024079_7	718252.FP2_04900	139.0	3.51025e-42	N/A	N/A
PHROG	UHGV-0024079_8	phrog_15303	82.5	3.8e-24	N/A	unknown function
structural_annotation	UHGV-0024079_10	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024079_12	1160721.RBI_I00206	58.5	0.0000000000724	N/A	N/A
structural_annotation	UHGV-0024079_12	PF10723	N/A	N/A	N/A	N/A
KOfam	UHGV-0024079_13	K23779	45.4	0.0000000000016	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
Pfam	UHGV-0024079_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024079_13	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0024079_13	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0024079_17	phrog_16490	101.6	8e-39	N/A	unknown function
eggNOG-mapper	UHGV-0024079_17	658655.HMPREF0988_00917	116.0	3.94e-28	N/A	N/A
eggNOG-mapper	UHGV-0024079_18	1408437.JNJN01000043_gene802	124.0	3.9e-35	N/A	N/A
eggNOG-mapper	UHGV-0024079_19	1408437.JNJN01000043_gene801	95.1	1.74e-21	N/A	N/A
KOfam	UHGV-0024079_20	K14059	182.2	0	int; integrase	N/A
PHROG	UHGV-0024079_20	phrog_1	166.5	0	integrase	integration and excision
UniRef90	UHGV-0024079_20	UniRef90_A0A367GI93	225.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0024079_20	1507.HMPREF0262_00307	163.0	6.5861e-44	Phage integrase family	N/A
Pfam	UHGV-0024079_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0024079_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0024079_20	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0024079_21	phrog_1373	42.1	0.000000000007	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024079_21	UniRef90_A0A2A7AM70	188.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0024079_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024079_21	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0024079_21	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024079_27	UniRef90_A0A2A7AM72	125.0	2.19e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0024079_27	1378168.N510_01712	64.7	0.0000000000481	N/A	N/A
structural_annotation	UHGV-0024079_27	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024079_28	UniRef90_UPI000BEF0F65	70.9	0.00000000000000636	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0024079_28	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024079_35	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A
PHROG	UHGV-0024079_38	phrog_14970	47.5	0.00000000000031	N/A	unknown function
COG	UHGV-0024079_38	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0024079_38	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0024079_39	phrog_72	45.8	0.000000000001	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0024079_39	411471.SUBVAR_05829	135.0	5.88e-38	N/A	N/A
structural_annotation	UHGV-0024079_39	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0024079_42	phrog_7566	86.7	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0024079_42	411471.SUBVAR_05830	107.0	5.55e-29	N/A	N/A
KOfam	UHGV-0024079_43	K03111	149.1	3.92364e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0024079_43	phrog_44	150.5	7.00649e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024079_43	UniRef90_A0A2A7ALU9	208.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0024079_43	748224.HMPREF9436_00638	216.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0024079_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0024079_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0024079_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0024079_43	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0024079_43	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024079_44	748224.HMPREF9436_00735	156.0	4.1058e-43	N/A	N/A
Pfam	UHGV-0024079_44	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0024079_44	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0024079_44	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0024079_46	K03496	207.0	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0024079_46	phrog_164	153.5	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024079_46	UniRef90_A0A2A7B6H3	358.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024079_46	411471.SUBVAR_05839	229.0	0	AAA domain	N/A
Pfam	UHGV-0024079_46	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0024079_46	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0024079_46	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024079_47	PF20331,COG5264	N/A	N/A	N/A	N/A
KOfam	UHGV-0024079_48	K03497	89.0	8.6e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0024079_48	phrog_4715	116.9	2e-34	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024079_48	UniRef90_A0A2A7B6Q0	297.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0024079_48	411471.SUBVAR_05842	177.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0024079_48	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0024079_48	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0024079_48	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024079_49	PF04545	N/A	N/A	N/A	N/A