UHGV-0024245 (vOTU-095532)

Viral Genome: UHGV-0024245

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0024245
vOTU ID	vOTU-095532
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_J_6_2308__NODE_3331_length_30633_cov_6.178885
Associated BioSample	SAMEA4766217
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.65 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.27
Jumbo phage	No

Genome content
Genome length (bp)	30,633
GC content	52.66%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	93%
Average CDS length (bps)	579.86
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0024245_1	phrog_4433	152.4	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-0024245_1	439375.Oant_2324	93.6	2.71e-20	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0024245_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0024245_1	NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_2	phrog_373	130.8	1e-38	anti-repressor	transcription regulation
UniRef90	UHGV-0024245_2	UniRef90_UPI001CBC74BC	195.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024245_2	1497679.EP56_18110	144.0	8.46e-39	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0024245_2	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0024245_2	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0024245_2	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0024245_2	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_5	phrog_8	42.6	0.000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024245_5	UniRef90_UPI001C009F10	119.0	6.29e-34	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024245_5	1002340.AFCF01000054_gene1903	49.3	0.00000418	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0024245_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024245_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0024245_5	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_6	phrog_8	52.8	0.0000000000000082	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024245_6	UniRef90_UPI001C020D87	205.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0024245_6	198094.BA_3829	59.7	0.00000000117	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0024245_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024245_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0024245_7	PF21715,NF008122,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_10	phrog_4980	107.3	3.9e-32	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0024245_10	UniRef90_UPI000F643789	77.4	0.0000000000000185	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-0024245_10	428127.EUBDOL_01530	68.2	0.0000000000528	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0024245_10	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0024245_10	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0024245_10	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0024245_10	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-0024245_13	K15773	46.7	0.00000000000058	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0024245_13	phrog_2328	45.7	0.00000000000038	transcriptional repressor	transcription regulation
UniRef90	UHGV-0024245_13	UniRef90_UPI0018CC79B4	324.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0024245_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0024245_13	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0024245_14	K14059	152.5	4.2039e-45	int; integrase	N/A
PHROG	UHGV-0024245_14	phrog_1	183.9	0	integrase	integration and excision
UniRef90	UHGV-0024245_14	UniRef90_A0A174D176	573.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0024245_14	411471.SUBVAR_05137	258.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0024245_14	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0024245_14	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0024245_14	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0024245_14	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024245_16	476272.RUMHYD_01772	55.1	0.000000184	N/A	N/A
structural_annotation	UHGV-0024245_16	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_17	phrog_20016	207.7	0	N/A	unknown function
UniRef90	UHGV-0024245_17	UniRef90_A0A285PT46	203.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0024245_17	1226322.HMPREF1545_00077	188.0	0	N/A	N/A
structural_annotation	UHGV-0024245_17	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_18	phrog_16490	139.3	2.09999e-41	N/A	unknown function
eggNOG-mapper	UHGV-0024245_18	1408437.JNJN01000043_gene803	131.0	1.25e-34	N/A	N/A
PHROG	UHGV-0024245_19	phrog_22984	78.7	4e-23	N/A	unknown function
PHROG	UHGV-0024245_20	phrog_21718	98.7	5.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0024245_20	397290.C810_05210	89.4	1.9e-20	N/A	N/A
PHROG	UHGV-0024245_21	phrog_3754	91.0	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0024245_21	1485543.JMME01000025_gene2462	102.0	1.13e-26	N/A	N/A
PHROG	UHGV-0024245_24	phrog_374	57.0	4.6e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0024245_24	927704.SELR_12480	68.9	0.00000000085	N/A	N/A
UniRef90	UHGV-0024245_25	UniRef90_A0A7X2P872	62.8	0.000000000699	Ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-0024245_25	1033733.CAEK01000007_gene1628	82.4	2.98e-18	N/A	N/A
Pfam	UHGV-0024245_25	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0024245_25	PF16734,PF01402	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_27	phrog_15303	113.0	1.3e-33	N/A	unknown function
Pfam	UHGV-0024245_27	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
PHROG	UHGV-0024245_28	phrog_1863	76.0	2.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0024245_28	718252.FP2_04900	146.0	4.2039e-45	N/A	N/A
KOfam	UHGV-0024245_29	K07273	173.4	0	acm; lysozyme	N/A
PHROG	UHGV-0024245_29	phrog_291	138.8	4.19997e-41	endolysin	lysis
UniRef90	UHGV-0024245_29	UniRef90_UPI001D0EE7D8	253.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0024245_29	748224.HMPREF9436_00154	236.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0024245_29	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0024245_29	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0024245_29	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_30	phrog_11541	41.0	0.0000000000067	N/A	unknown function
eggNOG-mapper	UHGV-0024245_30	761193.Runsl_0319	96.7	4.25e-18	N/A	N/A
PHROG	UHGV-0024245_31	phrog_3558	207.7	0	tail protein	tail
UniRef90	UHGV-0024245_31	UniRef90_A0A844DGT5	171.0	1.75022e-42	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0024245_31	411460.RUMTOR_00484	139.0	6.79e-32	Prophage endopeptidase tail	N/A
Pfam	UHGV-0024245_31	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0024245_31	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0024245_31	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024245_32	UniRef90_R6QN45	90.9	1.93e-18	Putative phage tail component domain protein	N/A
eggNOG-mapper	UHGV-0024245_32	411490.ANACAC_00709	81.3	0.00000000000000125	phage tail	N/A
COG	UHGV-0024245_32	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0024245_32	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_33	phrog_28775	110.9	9.3e-33	tail length tape measure protein	tail
UniRef90	UHGV-0024245_33	UniRef90_A0A6N7TLD3	518.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0024245_33	1492737.FEM08_12070	137.0	1.08e-30	tape measure	N/A
Pfam	UHGV-0024245_33	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0024245_33	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0024245_33	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0024245_33	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_36	phrog_885	62.2	6.1e-18	major tail protein	tail
eggNOG-mapper	UHGV-0024245_36	642492.Clole_1864	59.3	0.0000000268	N/A	N/A
structural_annotation	UHGV-0024245_36	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024245_37	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_38	phrog_17977	45.5	0.00000000000092	N/A	unknown function
UniRef90	UHGV-0024245_38	UniRef90_A0A844DHJ8	236.0	0	Phage head closure protein	N/A
NCBIFam	UHGV-0024245_38	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0024245_38	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_40	phrog_544	111.9	6.1e-33	major head protein	head and packaging
UniRef90	UHGV-0024245_40	UniRef90_A0A1C6B5R0	318.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0024245_40	476272.RUMHYD_01776	284.0	0	N/A	N/A
structural_annotation	UHGV-0024245_40	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024245_41	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_43	phrog_5	43.1	0.0000000000095	tail completion or Neck1 protein	connector
UniRef90	UHGV-0024245_43	UniRef90_A0A6N7TNP6	254.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0024245_43	1636204.A0A0E3T8J0_9CAUD	65.5	0.0000000000177	exonuclease activity	N/A
Pfam	UHGV-0024245_43	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0024245_43	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_45	phrog_8680	200.6	0	N/A	unknown function
UniRef90	UHGV-0024245_45	UniRef90_A0A844D688	441.0	0	N/A	N/A
eggNOG-mapper	UHGV-0024245_45	1423790.BN53_04265	181.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0024245_45	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0024245_45	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0024245_45	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_46	phrog_2468	83.0	2.7e-24	head morphogenesis	head and packaging
UniRef90	UHGV-0024245_46	UniRef90_A0A844DBI4	612.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0024245_46	1504822.CCNO01000013_gene286	133.0	9.35e-32	cell adhesion	N/A
Pfam	UHGV-0024245_46	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0024245_46	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024245_46	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0024245_48	phrog_64	123.9	4.4e-37	portal protein	head and packaging
UniRef90	UHGV-0024245_48	UniRef90_A0A6N7TNT3	501.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0024245_48	673376.F2VHW1_9CAUD	177.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0024245_48	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0024245_48	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A