UHGV-0024485 (vOTU-080832)

Viral Genome: UHGV-0024485

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0024485
vOTU ID	vOTU-080832
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_I_1_1742__NODE_1187_length_42954_cov_63.229564
Associated BioSample	SAMEA4766022
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.61 (High-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.24
Jumbo phage	No

Genome content
Genome length (bp)	42,954
GC content	55.31%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	95%
Average CDS length (bps)	744.49
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
dbAPIS	UHGV-0024485_1	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
PHROG	UHGV-0024485_2	phrog_111	159.3	0	DNA methyltransferase	other
UniRef90	UHGV-0024485_2	UniRef90_A0A1Y4EVK6	211.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0024485_2	1121468.AUBR01000099_gene3089	186.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0024485_2	oMTase_00015	181.1	0	orphan methyltransferase	RM
Pfam	UHGV-0024485_2	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0024485_2	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_5	phrog_22543	42.2	0.000000000013	N/A	unknown function
UniRef90	UHGV-0024485_5	UniRef90_UPI00082EBC63	55.1	0.000000179	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0024485_7	1123263.AUKY01000096_gene1822	75.1	0.0000000000000932	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0024485_7	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0024485_11	K06909	163.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0024485_11	phrog_979	152.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0024485_11	UniRef90_A0A3C0NMI6	671.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0024485_11	1410650.JHWL01000003_gene2834	646.0	0	N/A	N/A
Pfam	UHGV-0024485_11	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0024485_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0024485_11	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_12	phrog_156	284.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0024485_12	1410650.JHWL01000003_gene2833	516.0	0	N/A	N/A
structural_annotation	UHGV-0024485_12	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0024485_13	K07584	49.1	0.00000000000011	N/A	N/A
PHROG	UHGV-0024485_13	phrog_4478	41.3	0.000000000018	peptidase	other
UniRef90	UHGV-0024485_13	UniRef90_R6QMR4	53.1	0.00000101	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-0024485_13	1009370.ALO_08023	57.8	0.0000000033	Cysteine protease Prp	N/A
Pfam	UHGV-0024485_13	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0024485_13	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024485_13	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_14	phrog_13908	294.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0024485_14	1410650.JHWL01000003_gene2831	152.0	2.70002e-41	N/A	N/A
PHROG	UHGV-0024485_15	phrog_1357	272.4	0	major head protein	head and packaging
UniRef90	UHGV-0024485_15	UniRef90_A0A2V2GQW4	424.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0024485_15	748224.HMPREF9436_01399	367.0	0	N/A	N/A
Pfam	UHGV-0024485_15	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0024485_15	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0024485_15	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_16	phrog_15239	60.8	2e-17	N/A	unknown function
PHROG	UHGV-0024485_17	phrog_12105	121.2	5.1e-36	N/A	unknown function
eggNOG-mapper	UHGV-0024485_17	1519439.JPJG01000060_gene1891	67.0	0.00000000000146	N/A	N/A
PHROG	UHGV-0024485_18	phrog_511	240.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0024485_18	1410650.JHWL01000003_gene2827	325.0	0	N/A	N/A
structural_annotation	UHGV-0024485_18	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_20	phrog_372	117.9	1.1e-34	tail protein	tail
UniRef90	UHGV-0024485_20	UniRef90_UPI00103462F4	152.0	1.94e-35	N/A	N/A
eggNOG-mapper	UHGV-0024485_20	1399942.U3PFX4_9CAUD	78.6	0.00000000000282	peptidoglycan catabolic process	N/A
Pfam	UHGV-0024485_20	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0024485_20	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024485_21	UniRef90_R6D043	125.0	1.58e-29	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024485_21	1410650.JHWL01000003_gene2815	134.0	4.46e-33	N/A	N/A
PHROG	UHGV-0024485_22	phrog_22978	377.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0024485_22	1123288.SOV_4c02780	1172.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-0024485_22	PF13872	N/A	N/A	P-loop containing NTP hydrolase pore-1	AAA_34
Pfam	UHGV-0024485_22	PF13871	N/A	N/A	C-terminal domain on Strawberry notch homologue	Helicase_C_4
Pfam	UHGV-0024485_22	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
COG	UHGV-0024485_22	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-0024485_26	phrog_1493	52.1	0.000000000000013	endolysin	lysis
UniRef90	UHGV-0024485_26	UniRef90_A0A1C6GMR6	191.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0024485_26	871963.Desdi_1346	119.0	1.66e-28	NLP P60 protein	N/A
Pfam	UHGV-0024485_26	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0024485_26	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0024485_26	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_27	phrog_937	63.3	4.1e-18	hemolysin	other
eggNOG-mapper	UHGV-0024485_27	1519439.JPJG01000023_gene533	88.2	1.65e-21	N/A	N/A
PHROG	UHGV-0024485_28	phrog_1129	69.3	3.8e-20	holin	lysis
UniRef90	UHGV-0024485_28	UniRef90_A0A2V2CUX8	127.0	1.19e-36	Enolase	N/A
eggNOG-mapper	UHGV-0024485_28	1226322.HMPREF1545_00069	118.0	1.02e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0024485_28	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0024485_28	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024485_29	UniRef90_A0A8D9PDT6	83.2	4e-19	Transcriptional regulatory protein	N/A
UniRef90	UHGV-0024485_32	UniRef90_A0A843GWV6	86.7	4.93e-20	Rubrerythrin domain-containing protein	N/A
Pfam	UHGV-0024485_32	PF02915	N/A	N/A	Rubrerythrin	Rubrerythrin
structural_annotation	UHGV-0024485_32	PF02255,NF007156,COG1447	N/A	N/A	N/A	N/A
KOfam	UHGV-0024485_33	K14059	87.1	3e-25	int; integrase	N/A
PHROG	UHGV-0024485_33	phrog_1	117.5	1.2e-34	integrase	integration and excision
UniRef90	UHGV-0024485_33	UniRef90_UPI00195CC1EE	436.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0024485_33	411471.SUBVAR_05816	121.0	1.12e-28	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0024485_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0024485_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0024485_33	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
COG	UHGV-0024485_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0024485_34	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0024485_37	K22300	70.8	2.6e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0024485_37	phrog_8	73.1	5.6e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024485_37	UniRef90_A0A8B2X256	89.4	8.33e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024485_37	1462526.BN990_03843	76.6	9.22e-17	Helix-turn-helix domain	N/A
PADLOC	UHGV-0024485_37	retron_type_VI_hth_cluster2_1	55.3	0.0000000000000015	N/A	Retron
Pfam	UHGV-0024485_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024485_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0024485_37	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024485_38	UniRef90_UPI001B1B66C7	72.4	0.00000000000000336	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024485_38	1111454.HMPREF1250_1029	61.2	0.000000000011	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0024485_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0024485_38	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024485_39	1235835.C814_03153	65.1	0.000000000000422	N/A	N/A
structural_annotation	UHGV-0024485_39	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_43	phrog_59	124.3	5.4e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024485_43	UniRef90_A0A2H4ES51	122.0	2.47e-32	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0024485_43	213777.R9R2C9_9CAUD	120.0	4.7e-32	HNH endonuclease	N/A
PADLOC	UHGV-0024485_43	HEase_00016	72.8	5.2e-21	homing endonuclease	RM
structural_annotation	UHGV-0024485_43	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_45	phrog_2113	44.1	0.0000000000012	N/A	unknown function
UniRef90	UHGV-0024485_45	UniRef90_A0A8D9UH91	111.0	8.4e-28	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0024485_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0024485_45	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_48	phrog_155	141.3	6.19934e-42	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024485_48	UniRef90_UPI000985D1CB	181.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0024485_48	97138.C820_00777	168.0	0	ERF superfamily	N/A
Pfam	UHGV-0024485_48	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0024485_48	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0024485_49	K03111	143.2	2.59941e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0024485_49	phrog_44	139.1	2.59997e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024485_49	UniRef90_R6IDK3	186.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0024485_49	1226322.HMPREF1545_04080	165.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0024485_49	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0024485_49	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0024485_49	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0024485_49	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0024485_49	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_50	phrog_15768	97.3	1.8e-28	N/A	unknown function
UniRef90	UHGV-0024485_50	UniRef90_A0A417QFV0	139.0	4.34e-37	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024485_50	411490.ANACAC_00800	133.0	2.2e-35	N/A	N/A
structural_annotation	UHGV-0024485_50	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0024485_51	K02315	121.7	7.6e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0024485_51	phrog_50	115.8	4.5e-34	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024485_51	UniRef90_A0A6A8VIC3	190.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024485_51	445972.ANACOL_01829	181.0	0	N/A	N/A
Pfam	UHGV-0024485_51	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0024485_51	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0024485_51	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_52	phrog_72	45.3	0.00000000000073	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024485_52	UniRef90_A0A2Z4Q9W9	126.0	9.64e-34	NinB	N/A
eggNOG-mapper	UHGV-0024485_52	1304866.K413DRAFT_1197	72.0	0.000000000000176	N/A	N/A
structural_annotation	UHGV-0024485_52	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_53	phrog_1384	112.7	3.1e-33	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0024485_53	411471.SUBVAR_04675	182.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0024485_53	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0024485_54	phrog_7566	75.4	5.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0024485_54	693746.OBV_25470	68.6	0.000000000000152	N/A	N/A
PHROG	UHGV-0024485_55	phrog_15773	40.6	3.8e-21	N/A	unknown function
Pfam	UHGV-0024485_55	PF06692	N/A	N/A	Melon necrotic spot virus P7B protein	MNSV_P7B