UHGV-0024595 (vOTU-043556)

Viral Genome: UHGV-0024595

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0024595
vOTU ID	vOTU-043556
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_12_1914__NODE_607_length_44626_cov_20.923275
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.87
Jumbo phage	No

Genome content
Genome length (bp)	44,549
GC content	44.55%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	93%
Average CDS length (bps)	644.77
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0024595_4	PF19594	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_5	phrog_111	161.1	0	DNA methyltransferase	other
UniRef90	UHGV-0024595_5	UniRef90_UPI0018D31BCD	208.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0024595_5	1567011.A0A0A7RUD1_9VIRU	204.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0024595_5	oMTase_00015	207.2	0	orphan methyltransferase	RM
Pfam	UHGV-0024595_5	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
NCBIFam	UHGV-0024595_5	TIGR01712.1	N/A	N/A	phage N-6-adenine-methyltransferase	N/A
structural_annotation	UHGV-0024595_5	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_8	phrog_32997	108.1	3.5e-32	N/A	unknown function
UniRef90	UHGV-0024595_8	UniRef90_UPI0018ABF756	100.0	2.39e-26	ribosomal large subunit pseudouridine synthase B	N/A
eggNOG-mapper	UHGV-0024595_8	470145.BACCOP_01142	91.3	2.45e-23	N/A	N/A
PHROG	UHGV-0024595_9	phrog_14010	117.0	1.5e-34	N/A	unknown function
UniRef90	UHGV-0024595_9	UniRef90_A0A7U3RMS0	177.0	0	Ribosomal large subunit pseudouridine synthase B	N/A
eggNOG-mapper	UHGV-0024595_9	742726.HMPREF9448_00167	74.7	0.0000000000000633	N/A	N/A
Pfam	UHGV-0024595_9	PF20186	N/A	N/A	N/A	DUF6549
structural_annotation	UHGV-0024595_9	PF20186	N/A	N/A	N/A	N/A
KOfam	UHGV-0024595_11	K01448	101.4	1.1e-29	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0024595_11	phrog_435	131.3	9.9e-39	endolysin	lysis
UniRef90	UHGV-0024595_11	UniRef90_UPI0018A98FD7	211.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0024595_11	679935.Alfi_2718	206.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0024595_11	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0024595_11	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0024595_11	PF01520,TIGR02883,COG0860	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024595_12	UniRef90_UPI001E535CC6	152.0	1.12104e-44	phage holin family protein	N/A
eggNOG-mapper	UHGV-0024595_12	1347393.HG726026_gene2534	138.0	7.51001e-40	N/A	N/A
Pfam	UHGV-0024595_12	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0024595_12	PF05105,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_13	phrog_36068	60.5	1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0024595_13	1121101.HMPREF1532_02611	88.6	0.00000000000000326	regulation of response to stimulus	N/A
COG	UHGV-0024595_13	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
PHROG	UHGV-0024595_14	phrog_35885	237.0	0	N/A	unknown function
UniRef90	UHGV-0024595_14	UniRef90_A0A7U3RL91	204.0	0	Putative tail fiber	N/A
eggNOG-mapper	UHGV-0024595_14	1176422.I6S2N2_9CAUD	171.0	0	N/A	N/A
structural_annotation	UHGV-0024595_14	PF19266,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_15	phrog_19383	551.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0024595_15	1176422.I6R1A9_9CAUD	404.0	0	N/A	N/A
structural_annotation	UHGV-0024595_15	PF17994,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_16	phrog_20660	672.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0024595_16	UniRef90_A0A7U3RL27	402.0	0	Tail tape-measure protein	N/A
eggNOG-mapper	UHGV-0024595_16	1176422.I6S6Y5_9CAUD	352.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0024595_16	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0024595_16	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
structural_annotation	UHGV-0024595_16	PF10145,PF02321,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_17	phrog_8914	221.3	0	virion structural protein	head and packaging
UniRef90	UHGV-0024595_17	UniRef90_A0A088C4G9	124.0	9.5e-31	Tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0024595_17	99179.B5TR86_9CAUD	186.0	0	N/A	N/A
PHROG	UHGV-0024595_18	phrog_8145	173.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0024595_18	1176422.I6R1A5_9CAUD	103.0	4.95e-25	N/A	N/A
structural_annotation	UHGV-0024595_18	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_19	phrog_6195	44.4	0.0000000000017	tail protein	tail
eggNOG-mapper	UHGV-0024595_19	1347393.HG726021_gene380	58.5	0.000000022	N/A	N/A
PHROG	UHGV-0024595_20	phrog_8189	413.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0024595_20	1105171.H2A0E2_9CAUD	422.0	0	N/A	N/A
structural_annotation	UHGV-0024595_20	PF02839,NF041539	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_21	phrog_7231	446.2	0	virion structural protein	head and packaging
UniRef90	UHGV-0024595_21	UniRef90_A0A7U3MY95	530.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0024595_21	99179.B5TRC7_9CAUD	398.0	0	N/A	N/A
structural_annotation	UHGV-0024595_21	PF05065,MF_04113,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_22	phrog_7970	207.7	0	virion structural protein	head and packaging
UniRef90	UHGV-0024595_22	UniRef90_A0A7U3MYE1	350.0	0	Putative capsid associated protein	N/A
eggNOG-mapper	UHGV-0024595_22	1176422.I6S6X7_9CAUD	160.0	3.64338e-44	N/A	N/A
structural_annotation	UHGV-0024595_22	PF21662	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_24	phrog_30900	58.9	5.8e-17	N/A	unknown function
UniRef90	UHGV-0024595_24	UniRef90_A0A7U3RMT1	88.2	4.46e-19	Inner membrane protein	N/A
PHROG	UHGV-0024595_25	phrog_7376	635.6	0	portal protein	head and packaging
UniRef90	UHGV-0024595_25	UniRef90_A0A7U3MXY7	744.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0024595_25	1121101.HMPREF1532_02599	742.0	0	N/A	N/A
structural_annotation	UHGV-0024595_25	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_27	phrog_8193	210.5	0	major head protein	head and packaging
UniRef90	UHGV-0024595_27	UniRef90_A0A7U3MWC4	249.0	0	Putative tail protein	N/A
eggNOG-mapper	UHGV-0024595_27	1105171.H2A0E7_9CAUD	184.0	0	N/A	N/A
structural_annotation	UHGV-0024595_27	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_28	phrog_38	299.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0024595_28	UniRef90_UPI001E40D079	655.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0024595_28	1105171.H2A0E8_9CAUD	465.0	0	intein-mediated protein splicing	N/A
Pfam	UHGV-0024595_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0024595_28	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
structural_annotation	UHGV-0024595_28	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024595_30	1280685.AUKC01000052_gene1353	50.4	0.00000467	-acetyltransferase	N/A
Pfam	UHGV-0024595_30	PF13508	N/A	N/A	Acetyltransferase (GNAT) domain	Acetyltransf_7
COG	UHGV-0024595_30	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
structural_annotation	UHGV-0024595_30	PF13673,MF_02018,NF000487,COG3153	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_31	phrog_309	86.1	2.7e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0024595_31	UniRef90_UPI00189DC102	110.0	1.89e-27	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0024595_31	457424.BFAG_02415	102.0	6.13e-25	Helix-turn-helix of insertion element transposase	N/A
Pfam	UHGV-0024595_31	PF20901	N/A	N/A	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
COG	UHGV-0024595_31	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0024595_31	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0024595_32	K00571	90.5	2.3e-26	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0024595_32	phrog_498	237.1	0	DNA methyltransferase	other
UniRef90	UHGV-0024595_32	UniRef90_A0A1Y4JY04	202.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0024595_32	226185.EF_2114	174.0	0	DNA methylase	N/A
PADLOC	UHGV-0024595_32	MTase_II_00015	159.8	0	Type II methyltransferase	RM
Pfam	UHGV-0024595_32	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0024595_32	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0024595_32	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0024595_32	PF01555,PF02195,NF010253,TIGR00180,COG0863,COG5119	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024595_33	TIGR04412	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_35	phrog_3193	102.0	4.1e-30	N/A	unknown function
UniRef90	UHGV-0024595_35	UniRef90_UPI0018A95222	232.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0024595_35	326425.lhe_1047	55.1	0.00000018	ASCH domain	N/A
structural_annotation	UHGV-0024595_35	MF_00684,NF008917,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-0024595_36	K03111	130.8	1.5e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0024595_36	phrog_44	100.9	1.6e-29	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024595_36	UniRef90_F8X2D4	129.0	7.81e-36	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0024595_36	742767.HMPREF9456_02057	129.0	1.31e-36	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0024595_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0024595_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0024595_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0024595_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0024595_36	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_37	phrog_59	108.0	6.2e-32	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024595_37	UniRef90_UPI00164BBA84	114.0	5.05e-29	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024595_37	1229751.R9QM99_9CAUD	92.0	1.45e-21	HNH endonuclease	N/A
PADLOC	UHGV-0024595_37	HEase_00016	73.4	4.1e-21	homing endonuclease	RM
Pfam	UHGV-0024595_37	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0024595_37	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0024595_37	PF07463	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024595_39	172045.KS04_18310	84.7	8.89e-21	N/A	N/A
UniRef90	UHGV-0024595_40	UniRef90_A0A7U3RL86	226.0	0	Recombination protein/HNH endonuclease	N/A
eggNOG-mapper	UHGV-0024595_40	1176422.I6RTQ2_9CAUD	172.0	0	HNH endonuclease	N/A
PHROG	UHGV-0024595_41	phrog_6141	68.5	5.6e-20	N/A	unknown function
KOfam	UHGV-0024595_43	K02342	75.2	8.1e-22	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0024595_43	phrog_192	87.5	1.3e-25	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024595_43	UniRef90_UPI0018A8F844	251.0	0	3'-5' exonuclease	N/A
eggNOG-mapper	UHGV-0024595_43	867902.Ornrh_1324	114.0	1.16e-25	DNA polymerase	N/A
PADLOC	UHGV-0024595_43	cd06127	80.5	4.8e-23	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0024595_43	PF00929	N/A	N/A	Exonuclease	RNase_T
COG	UHGV-0024595_43	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0024595_43	PF00929,MF_00157,NF004719,COG0847	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_45	phrog_23774	142.4	1.49939e-42	N/A	unknown function
UniRef90	UHGV-0024595_45	UniRef90_A0A7U3MW72	191.0	0	Protein NinB/nuclease	N/A
eggNOG-mapper	UHGV-0024595_45	1105171.H2A0G1_9CAUD	129.0	1.3e-36	N/A	N/A
structural_annotation	UHGV-0024595_45	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0024595_47	K19171	44.7	0.00000000000065	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0024595_47	phrog_1499	208.7	0	N/A	unknown function
UniRef90	UHGV-0024595_47	UniRef90_UPI0018A888BC	493.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0024595_47	926549.KI421517_gene2360	95.9	1.45e-18	nuclear chromosome segregation	N/A
Pfam	UHGV-0024595_47	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0024595_47	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0024595_47	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_51	phrog_2245	73.1	3.7e-21	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0024595_51	UniRef90_UPI0004A716F8	52.0	0.00000134	antitoxin	N/A
PHROG	UHGV-0024595_56	phrog_1770	92.7	4.1e-27	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024595_56	UniRef90_A0A7U3MXY0	203.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0024595_56	1176422.I6R9X3_9CAUD	137.0	1.12e-38	nucleic acid binding	N/A
structural_annotation	UHGV-0024595_56	PF07066,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_57	phrog_34953	92.5	4.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0024595_57	1176422.I6RTP3_9CAUD	105.0	1.33e-23	N/A	N/A
COG	UHGV-0024595_58	COG0640	N/A	N/A	DNA-binding transcriptional regulator, ArsR family	N/A
structural_annotation	UHGV-0024595_58	PF01978,MF_01909,TIGR01610,COG1675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024595_59	1089553.Tph_c11910	72.4	0.00000000000833	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0024595_59	PF18897	N/A	N/A	Recombination directionality factor-like	Gp3-like
COG	UHGV-0024595_59	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0024595_59	PF18897	N/A	N/A	N/A	N/A
PHROG	UHGV-0024595_60	phrog_298	110.5	9.4e-33	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024595_60	UniRef90_A0A7U3RL83	375.0	0	Exonuclease	N/A
eggNOG-mapper	UHGV-0024595_60	313596.RB2501_01430	55.1	0.00000977	Belongs to the helicase family. UvrD subfamily	N/A
Pfam	UHGV-0024595_60	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
COG	UHGV-0024595_60	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0024595_60	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024595_61	UniRef90_A0A7U3RL19	100.0	3.3e-26	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024595_61	1105171.H2A0B0_9CAUD	73.2	2.44e-16	N/A	N/A
structural_annotation	UHGV-0024595_61	PF12844,COG3655	N/A	N/A	N/A	N/A