UHGV-0024665 (vOTU-043567)

Viral Genome: UHGV-0024665

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0024665
vOTU ID	vOTU-043567
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_21_1780__NODE_1165_length_40757_cov_18.767552
Associated BioSample	SAMEA4766039
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9798
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7.76
Jumbo phage	No

Genome content
Genome length (bp)	40,694
GC content	52.28%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	86%
Average CDS length (bps)	603.57
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0024665_3	K03091	83.0	5.3e-24	sigH; RNA polymerase sporulation-specific sigma factor	N/A
Pfam	UHGV-0024665_3	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0024665_3	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-0024665_3	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0024665_3	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0024665_3	PF00196,MF_00959,NF006158,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0024665_4	K01520	167.0	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0024665_4	phrog_135	132.0	3.2e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024665_4	UniRef90_UPI001873736C	191.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0024665_4	1282887.AUJG01000016_gene1113	155.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0024665_4	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0024665_4	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0024665_4	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0024665_4	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024665_5	1121405.dsmv_2591	58.9	0.0000000112	N/A	N/A
Pfam	UHGV-0024665_7	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
PHROG	UHGV-0024665_8	phrog_3896	74.2	1.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0024665_8	397290.C810_01338	57.4	0.000000000164	N/A	N/A
KOfam	UHGV-0024665_10	K07741	106.1	8e-31	antB; anti-repressor protein	N/A
PHROG	UHGV-0024665_10	phrog_130	179.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0024665_10	UniRef90_UPI001C3C1005	305.0	0	Phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0024665_10	568816.Acin_1403	267.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0024665_10	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0024665_10	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0024665_10	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0024665_10	PF03374,PF02498,COG3645,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024665_11	UniRef90_A0A810QFN4	326.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024665_11	871968.DESME_08840	329.0	0	N/A	N/A
Pfam	UHGV-0024665_11	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
eggNOG-mapper	UHGV-0024665_12	693746.OBV_01600	57.0	0.00000402	N/A	N/A
PHROG	UHGV-0024665_13	phrog_20388	91.1	1.1e-26	endolysin	lysis
UniRef90	UHGV-0024665_13	UniRef90_UPI0018CC5E5E	98.6	7.32e-21	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0024665_13	1203606.HMPREF1526_00253	102.0	4.14e-22	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0024665_13	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0024665_13	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0024665_13	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0024665_13	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0024665_14	phrog_30034	119.7	3e-35	N/A	unknown function
UniRef90	UHGV-0024665_14	UniRef90_A0A2Y9CAD1	153.0	1.4013e-45	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0024665_14	411460.RUMTOR_02099	132.0	2.28e-36	N/A	N/A
Pfam	UHGV-0024665_14	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0024665_14	PF14600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024665_17	PF21253,PF07210,NF038128,TIGR03000,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0024665_18	phrog_21412	56.4	2.2e-16	tail fiber protein	tail
eggNOG-mapper	UHGV-0024665_18	1408422.JHYF01000026_gene3527	94.4	7.71e-21	nuclear chromosome segregation	N/A
COG	UHGV-0024665_18	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0024665_19	phrog_5107	40.0	0.00000000003	amidase	lysis
UniRef90	UHGV-0024665_19	UniRef90_A0A4D7ASB8	504.0	0	N/A	N/A
eggNOG-mapper	UHGV-0024665_19	1519439.JPJG01000011_gene54	512.0	0	N/A	N/A
structural_annotation	UHGV-0024665_19	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024665_20	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024665_21	1519439.JPJG01000011_gene57	124.0	1.8e-34	N/A	N/A
structural_annotation	UHGV-0024665_21	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0024665_22	phrog_1129	62.5	5.1e-18	holin	lysis
UniRef90	UHGV-0024665_22	UniRef90_A0A0D8J2M2	118.0	6.65e-33	Enolase	N/A
eggNOG-mapper	UHGV-0024665_22	665956.HMPREF1032_03272	116.0	6.26e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0024665_22	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0024665_22	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0024665_23	phrog_1863	66.9	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0024665_23	748224.HMPREF9436_01412	99.8	9.48e-27	N/A	N/A
PHROG	UHGV-0024665_24	phrog_422	124.5	7.8e-37	major head protein	head and packaging
UniRef90	UHGV-0024665_24	UniRef90_A0A8J6JH37	292.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0024665_24	693746.OBV_01700	214.0	0	N/A	N/A
Pfam	UHGV-0024665_24	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0024665_24	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0024665_26	phrog_156	85.7	8e-26	portal protein	head and packaging
eggNOG-mapper	UHGV-0024665_26	693746.OBV_01670	506.0	0	N/A	N/A
structural_annotation	UHGV-0024665_26	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0024665_29	phrog_5653	40.7	0.0000000000014	terminase large subunit	head and packaging
UniRef90	UHGV-0024665_29	UniRef90_A0A1Y3RJJ5	238.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024665_29	693746.OBV_01690	219.0	0	phage Terminase large subunit	N/A
COG	UHGV-0024665_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0024665_29	PF20441,MF_04148,TIGR01547,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0024665_30	phrog_374	155.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024665_30	UniRef90_A0A6L8SWJ4	142.0	3.64e-39	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024665_30	742767.HMPREF9456_02044	150.0	2.99878e-43	N/A	N/A
PHROG	UHGV-0024665_31	phrog_979	48.9	0.000000000000073	terminase large subunit	head and packaging
UniRef90	UHGV-0024665_31	UniRef90_K1TA53	125.0	5.49e-34	Phage terminase, large subunit, PBSX (Fragment)	N/A
eggNOG-mapper	UHGV-0024665_31	693746.OBV_01690	129.0	6.52e-34	phage Terminase large subunit	N/A
COG	UHGV-0024665_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0024665_32	1235802.C823_02864	55.1	0.00000000407	N/A	N/A
PHROG	UHGV-0024665_33	phrog_15863	49.9	4.6e-20	N/A	unknown function
UniRef90	UHGV-0024665_33	UniRef90_UPI00068FC51E	336.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0024665_33	1519439.JPJG01000053_gene1369	336.0	0	DnaJ molecular chaperone homology domain	N/A
Pfam	UHGV-0024665_33	PF18847	N/A	N/A	Large polyvalent protein associated domain 29	LPD29
COG	UHGV-0024665_33	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
UniRef90	UHGV-0024665_37	UniRef90_A0A7M1RS47	60.1	0.0000000197	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0024665_37	1408437.JNJN01000043_gene801	71.2	0.000000000000495	N/A	N/A
KOfam	UHGV-0024665_38	K14059	97.6	2e-28	int; integrase	N/A
PHROG	UHGV-0024665_38	phrog_1	93.3	3.3e-27	integrase	integration and excision
UniRef90	UHGV-0024665_38	UniRef90_R6RH38	227.0	0	Prophage LambdaCh01 site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-0024665_38	411468.CLOSCI_00325	204.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0024665_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0024665_38	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0024665_38	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024665_39	UniRef90_A0A3A6JSY4	66.6	0.00000000000969	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-0024665_39	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0024665_45	K22300	52.2	0.000000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0024665_45	phrog_7241	43.4	0.0000000000056	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024665_45	UniRef90_A0A1S2GHY7	54.3	0.0000000499	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024665_45	1125712.HMPREF1316_2427	53.5	0.000000286	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0024665_45	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0024665_45	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0024665_46	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0024665_49	K18830	40.6	0.000000000052	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0024665_49	phrog_8	42.9	0.0000000000092	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024665_49	UniRef90_UPI00077900C6	62.0	0.00000000784	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0024665_49	888049.HMPREF8578_0759	54.7	0.000000671	sequence-specific DNA binding	N/A
Pfam	UHGV-0024665_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024665_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0024665_50	phrog_298	80.1	7.4e-24	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024665_50	UniRef90_A0A1C5T0L2	90.1	9.63e-19	PD-(D/E)XK nuclease superfamily	N/A
eggNOG-mapper	UHGV-0024665_50	1218075.BAYA01000003_gene606	78.6	0.00000000000000331	N/A	N/A
structural_annotation	UHGV-0024665_50	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0024665_52	phrog_561	130.6	3.8e-39	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024665_52	UniRef90_A0A174RC35	230.0	0	RecT family	N/A
eggNOG-mapper	UHGV-0024665_52	1129145.H2BD49_9CAUD	157.0	5.60519e-45	DNA metabolic process	N/A
Pfam	UHGV-0024665_52	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0024665_52	PF03837,TIGR01913	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024665_54	PF08962	N/A	N/A	N/A	N/A
PHROG	UHGV-0024665_55	phrog_2562	125.3	6.7e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024665_55	UniRef90_UPI00189A2195	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0024665_55	1235790.C805_00030	179.0	0	N/A	N/A
Pfam	UHGV-0024665_55	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0024665_55	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0024665_56	phrog_1770	101.6	7.7e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024665_56	UniRef90_A0A1L8CM45	102.0	7.23e-25	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0024665_56	994601.G9BW80_9CAUD	98.6	3.3e-24	nucleic acid binding	N/A
structural_annotation	UHGV-0024665_56	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-0024665_57	K05840	53.8	2.2e-22	DRD5; dopamine receptor D5	N/A
PHROG	UHGV-0024665_57	phrog_15773	57.0	1.5e-27	N/A	unknown function
dbAPIS	UHGV-0024665_57	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
KOfam	UHGV-0024665_58	K00390	104.4	1.2e-30	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0024665_58	phrog_424	122.3	3.6e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0024665_58	UniRef90_UPI00164AFBC1	346.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0024665_58	1408437.JNJN01000032_gene2312	341.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0024665_58	BrxP_00001	61.4	8.4e-19	BrxP	BREX
Pfam	UHGV-0024665_58	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0024665_58	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0024665_58	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A