UHGV-0025172 (vOTU-115198)

Viral Genome: UHGV-0025172

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0025172
vOTU ID	vOTU-115198
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_I_3_1743__NODE_2228_length_29780_cov_4.589233
Associated BioSample	SAMEA4766023
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.25 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9779
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.13
Jumbo phage	No

Genome content
Genome length (bp)	29,780
GC content	54.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	89%
Average CDS length (bps)	491.94
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0025172_1	1408437.JNJN01000060_gene452	190.0	0	heme binding	N/A
COG	UHGV-0025172_1	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
UniRef90	UHGV-0025172_2	UniRef90_A0A4R1R5G7	80.1	3.91e-19	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-0025172_2	658088.HMPREF0987_00997	75.5	4.46e-18	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0025172_2	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0025172_2	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-0025172_3	K14059	90.8	2.3e-26	int; integrase	N/A
PHROG	UHGV-0025172_3	phrog_1	94.1	1.9e-27	integrase	integration and excision
UniRef90	UHGV-0025172_3	UniRef90_UPI001897E1C8	156.0	3.11e-40	site-specific integrase	N/A
eggNOG-mapper	UHGV-0025172_3	411471.SUBVAR_07390	94.0	6.4e-19	Phage integrase family	N/A
Pfam	UHGV-0025172_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0025172_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0025172_3	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-0025172_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025172_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0025172_4	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025172_5	1268072.PSAB_08410	58.2	0.0000000259	N/A	N/A
structural_annotation	UHGV-0025172_5	PF10358	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_7	phrog_8	54.1	0.0000000000000035	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025172_7	UniRef90_A0A373XY93	97.8	8.82e-24	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0025172_7	665956.HMPREF1032_02614	68.2	0.000000000000443	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0025172_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0025172_7	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025172_8	UniRef90_A0A7X1LWA7	78.6	1.59e-17	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0025172_8	428125.CLOLEP_02737	64.7	0.000000000000773	N/A	N/A
structural_annotation	UHGV-0025172_8	TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_9	phrog_463	220.3	0	anti-repressor	transcription regulation
UniRef90	UHGV-0025172_9	UniRef90_UPI00137B411D	269.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0025172_9	411490.ANACAC_00813	178.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0025172_9	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0025172_9	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0025172_9	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0025172_9	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025172_10	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025172_11	596152.DesU5LDRAFT_1910	88.6	5.21e-19	N/A	N/A
structural_annotation	UHGV-0025172_11	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_16	phrog_253	114.2	1.1e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025172_16	UniRef90_E2ZNS5	169.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0025172_16	748224.HMPREF9436_03356	169.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-0025172_16	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0025172_16	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_17	phrog_7838	141.5	6.8005e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025172_17	UniRef90_A0A8D9UGW3	205.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0025172_17	742767.HMPREF9456_02397	166.0	0	N/A	N/A
structural_annotation	UHGV-0025172_17	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_18	phrog_72	59.0	5.9e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025172_18	UniRef90_UPI000C7BF263	165.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0025172_18	445972.ANACOL_01825	142.0	7.01994e-41	N/A	N/A
structural_annotation	UHGV-0025172_18	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_19	phrog_7566	79.3	3.5e-23	N/A	unknown function
UniRef90	UHGV-0025172_19	UniRef90_A0A8D9UHC0	77.8	1.72e-16	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0025172_19	693746.OBV_25470	84.7	9.56e-20	N/A	N/A
KOfam	UHGV-0025172_20	K03111	118.8	7.8e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0025172_20	phrog_44	123.5	1.8e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025172_20	UniRef90_R6I6X7	129.0	6.83e-36	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0025172_20	445972.ANACOL_01827	121.0	1.84e-33	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0025172_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0025172_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0025172_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0025172_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0025172_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_21	phrog_270	118.3	8.8e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025172_21	UniRef90_A0A7X3DHC7	98.2	5.37e-21	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0025172_21	1449126.JQKL01000003_gene1705	100.0	9.59e-23	ROK family	N/A
Pfam	UHGV-0025172_21	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0025172_21	COG3355	N/A	N/A	Predicted transcriptional regulator	N/A
structural_annotation	UHGV-0025172_21	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0025172_22	K02314	227.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0025172_22	phrog_19	216.9	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025172_22	UniRef90_UPI001F1C052D	436.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0025172_22	1203606.HMPREF1526_01325	163.0	4.54021e-43	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0025172_22	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0025172_22	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0025172_22	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0025172_22	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0025172_23	K01160	44.4	0.0000000000045	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0025172_23	phrog_1682	67.8	1.8e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025172_23	UniRef90_R7FGZ0	112.0	9.28e-30	Gp63	N/A
eggNOG-mapper	UHGV-0025172_23	220668.lp_2433	93.6	5.21e-23	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0025172_23	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0025172_23	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_24	phrog_236	80.9	2.9e-23	nucleotide kinase	other
UniRef90	UHGV-0025172_24	UniRef90_UPI001373AFCB	98.6	4.43e-24	N/A	N/A
eggNOG-mapper	UHGV-0025172_24	1236504.HMPREF2132_11120	78.6	1.64e-17	N/A	N/A
Pfam	UHGV-0025172_24	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0025172_24	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_26	phrog_757	179.0	0	DNA methyltransferase	other
UniRef90	UHGV-0025172_26	UniRef90_UPI001C00B13F	406.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0025172_26	748224.HMPREF9436_03069	319.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0025172_26	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0025172_26	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_29	phrog_6721	293.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0025172_29	665950.HMPREF1025_01974	279.0	0	N/A	N/A
structural_annotation	UHGV-0025172_29	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_30	phrog_599	46.7	0.00000000000067	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0025172_30	UniRef90_A0A845MWR1	64.7	0.00000000000177	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0025172_30	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0025172_30	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0025172_30	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0025172_30	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_31	phrog_3136	133.5	6.50001e-40	N/A	unknown function
UniRef90	UHGV-0025172_31	UniRef90_UPI001A9A8D4F	119.0	1.36e-30	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0025172_31	97139.C824_00742	58.9	0.0000000134	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0025172_31	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0025172_31	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_33	phrog_36	74.2	2.1e-21	transcriptional regulator	transcription regulation
Pfam	UHGV-0025172_33	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0025172_33	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_34	phrog_5070	142.9	1.10002e-42	N/A	unknown function
eggNOG-mapper	UHGV-0025172_34	929794.CALV01000014_gene27	79.3	0.0000000000000325	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	N/A
COG	UHGV-0025172_34	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0025172_34	MF_01691,NF040481	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025172_35	PF10013,COG4338	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025172_36	1394176.AWUO01000014_gene642	94.4	8.38e-23	N/A	N/A
structural_annotation	UHGV-0025172_36	PF07825,TIGR01764,COG3311	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025172_39	469378.Ccur_02570	70.5	0.00000000000000136	N/A	N/A
PHROG	UHGV-0025172_40	phrog_17101	45.8	0.0000000000007	N/A	unknown function
structural_annotation	UHGV-0025172_46	PF03869	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_47	phrog_2412	42.0	0.00000000001	N/A	unknown function
KOfam	UHGV-0025172_48	K21523	48.7	0.000000000000041	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0025172_48	phrog_2	102.2	7.6e-30	terminase large subunit	head and packaging
UniRef90	UHGV-0025172_48	UniRef90_UPI001F401ABC	655.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0025172_48	316274.Haur_1384	149.0	8.18e-37	N/A	N/A
Pfam	UHGV-0025172_48	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0025172_48	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0025172_48	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_49	phrog_3287	176.1	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0025172_49	665956.HMPREF1032_03917	669.0	0	N/A	N/A
structural_annotation	UHGV-0025172_49	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0025172_52	phrog_35275	59.5	2.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0025172_52	1226322.HMPREF1545_03846	70.1	0.0000000000521	N/A	N/A
PHROG	UHGV-0025172_53	phrog_24113	56.3	4.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0025172_53	1226322.HMPREF1545_03847	49.7	0.00000909	N/A	N/A
structural_annotation	UHGV-0025172_53	PF11133,COG5471	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025172_54	1226322.HMPREF1545_03848	60.1	0.000000000881	N/A	N/A