UHGV-0025239 (vOTU-071340)

Viral Genome: UHGV-0025239

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0025239
vOTU ID	vOTU-071340
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_15_1738__NODE_1650_length_40700_cov_9.620338
Associated BioSample	SAMEA4766018
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9725
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.27
Jumbo phage	No

Genome content
Genome length (bp)	40,700
GC content	39.71%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	93%
Average CDS length (bps)	703.44
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0025239_2	K20478	138.0	1.90002e-41	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0025239_2	phrog_22978	97.4	2.29953e-42	N/A	unknown function
eggNOG-mapper	UHGV-0025239_2	748224.HMPREF9436_01406	240.0	0	N/A	N/A
eggNOG-mapper	UHGV-0025239_3	1410650.JHWL01000003_gene2815	90.9	5.29e-17	N/A	N/A
eggNOG-mapper	UHGV-0025239_5	411460.RUMTOR_00484	84.3	0.0000000000000888	Prophage endopeptidase tail	N/A
COG	UHGV-0025239_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0025239_5	PF07902	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_6	phrog_511	240.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0025239_6	1410650.JHWL01000003_gene2827	367.0	0	N/A	N/A
structural_annotation	UHGV-0025239_6	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_7	phrog_12105	112.5	2.6e-33	N/A	unknown function
PHROG	UHGV-0025239_9	phrog_1357	202.2	0	major head protein	head and packaging
UniRef90	UHGV-0025239_9	UniRef90_A0A6L5YGG5	400.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0025239_9	1410650.JHWL01000003_gene2830	301.0	0	N/A	N/A
Pfam	UHGV-0025239_9	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0025239_9	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0025239_9	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_10	phrog_13908	175.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0025239_10	1410650.JHWL01000003_gene2831	103.0	1.85e-22	N/A	N/A
KOfam	UHGV-0025239_11	K07584	69.2	7.3e-20	N/A	N/A
PHROG	UHGV-0025239_11	phrog_4478	58.5	4.5e-17	peptidase	other
UniRef90	UHGV-0025239_11	UniRef90_A0A841YBI3	65.1	0.0000000000193	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0025239_11	1232430.CAVG010000080_gene744	63.2	0.0000000000192	Cysteine protease Prp	N/A
Pfam	UHGV-0025239_11	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0025239_11	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025239_11	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_12	phrog_156	290.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0025239_12	1410650.JHWL01000003_gene2833	464.0	0	N/A	N/A
structural_annotation	UHGV-0025239_12	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0025239_13	K06909	152.2	4.2039e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0025239_13	phrog_979	129.5	1.2e-39	terminase large subunit	head and packaging
UniRef90	UHGV-0025239_13	UniRef90_UPI0006875436	560.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0025239_13	1410650.JHWL01000003_gene2834	560.0	0	N/A	N/A
Pfam	UHGV-0025239_13	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0025239_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0025239_13	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_15	phrog_15863	152.0	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0025239_15	UniRef90_A0A415YCN0	213.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0025239_15	888064.HMPREF9088_2252	167.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0025239_15	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
eggNOG-mapper	UHGV-0025239_16	97139.C824_00161	58.2	0.000000000782	N/A	N/A
UniRef90	UHGV-0025239_18	UniRef90_A0A412ULX9	75.5	7.53e-17	XRE family transcriptional regulator	N/A
Pfam	UHGV-0025239_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025239_18	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0025239_18	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0025239_19	K07273	202.9	0	acm; lysozyme	N/A
PHROG	UHGV-0025239_19	phrog_291	171.8	0	endolysin	lysis
UniRef90	UHGV-0025239_19	UniRef90_A0A373KPS8	491.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0025239_19	1120933.ATUY01000002_gene158	167.0	0	lysozyme activity	N/A
Pfam	UHGV-0025239_19	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0025239_19	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0025239_19	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0025239_19	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_20	phrog_443	64.2	3.4e-18	holin	lysis
UniRef90	UHGV-0025239_20	UniRef90_R6MWB0	89.4	4.85e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0025239_20	1298920.KI911353_gene2669	82.0	6.09e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0025239_20	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0025239_20	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_21	phrog_1863	68.3	3.2e-20	N/A	unknown function
UniRef90	UHGV-0025239_21	UniRef90_UPI001F223E8B	72.0	0.0000000000000083	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0025239_21	428125.CLOLEP_01781	71.6	0.00000000000000165	N/A	N/A
KOfam	UHGV-0025239_22	K01520	140.5	1.29998e-41	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0025239_22	phrog_135	136.4	1.3e-40	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025239_22	UniRef90_UPI00164A78A3	163.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0025239_22	1282887.AUJG01000016_gene1113	145.0	5.31933e-42	N/A	N/A
Pfam	UHGV-0025239_22	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0025239_22	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0025239_22	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0025239_22	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0025239_23	K00571	176.2	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0025239_23	phrog_67	150.4	0	DNA methyltransferase	other
UniRef90	UHGV-0025239_23	UniRef90_A0A1G5ET13	315.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0025239_23	1122243.KB903771_gene1539	184.0	0	DNA methylase	N/A
PADLOC	UHGV-0025239_23	MTase_II_00157	150.6	1.4013e-45	Type II methyltransferase	RM
Pfam	UHGV-0025239_23	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0025239_23	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0025239_23	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_25	phrog_599	40.9	0.00000000004	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0025239_25	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0025239_25	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0025239_26	phrog_25754	64.7	9.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0025239_26	97139.C824_00736	75.9	0.00000000000000439	N/A	N/A
KOfam	UHGV-0025239_27	K22300	53.8	0.0000000000000045	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0025239_27	phrog_8	61.6	1.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025239_27	UniRef90_A0A374N9T4	107.0	2.97e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0025239_27	717605.Theco_0106	79.0	6.44e-18	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0025239_27	retron_type_VI_hth_cluster2_1	40.3	0.000000000093	N/A	Retron
Pfam	UHGV-0025239_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025239_27	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0025239_27	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_28	phrog_10714	46.0	0.00000000000069	N/A	unknown function
eggNOG-mapper	UHGV-0025239_28	742723.HMPREF9477_00922	55.1	0.00000000754	N/A	N/A
PHROG	UHGV-0025239_31	phrog_301	74.8	1.1e-21	secreted protein	other
UniRef90	UHGV-0025239_31	UniRef90_UPI00112B19FF	95.1	6.16e-23	N/A	N/A
eggNOG-mapper	UHGV-0025239_31	397290.C810_05192	106.0	4.25e-28	N/A	N/A
structural_annotation	UHGV-0025239_31	PF07509,MF_00720,NF038397,COG3390	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_37	phrog_4433	129.1	2.6e-38	N/A	unknown function
eggNOG-mapper	UHGV-0025239_37	886882.PPSC2_p0363	102.0	6.32e-22	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0025239_37	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0025239_37	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025239_39	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_40	phrog_190	120.7	1.1e-35	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025239_40	UniRef90_UPI001C0F5697	107.0	9.95e-28	N/A	N/A
eggNOG-mapper	UHGV-0025239_40	1236514.BAKL01000051_gene3708	89.7	1.08e-21	N/A	N/A
Pfam	UHGV-0025239_40	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0025239_40	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_42	phrog_428	149.4	2.8026e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025239_42	UniRef90_A0A2T6EDZ3	86.7	2.83e-16	Replication protein	N/A
eggNOG-mapper	UHGV-0025239_42	1295642.H839_08149	109.0	3.15e-25	Replication initiation and membrane attachment	N/A
Pfam	UHGV-0025239_42	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0025239_42	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0025239_42	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0025239_43	K03111	69.1	1e-19	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0025239_43	phrog_44	65.7	8.6e-19	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025239_43	UniRef90_F4GLF7	74.7	0.0000000000000161	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0025239_43	760011.Spico_0701	74.7	0.00000000000000271	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0025239_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0025239_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0025239_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0025239_43	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_44	phrog_155	152.8	1.4013e-45	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025239_44	UniRef90_UPI000F63C62A	187.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0025239_44	929506.CbC4_1193	182.0	0	ERF superfamily	N/A
Pfam	UHGV-0025239_44	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0025239_44	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0025239_45	phrog_253	113.9	1.3e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025239_45	UniRef90_UPI000D2FBDEF	81.6	1.35e-16	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0025239_45	1256908.HMPREF0373_00657	69.7	0.000000000000926	Siphovirus Gp157	N/A
Pfam	UHGV-0025239_45	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0025239_45	PF05565,NF002139	N/A	N/A	N/A	N/A
KOfam	UHGV-0025239_51	K18830	53.9	0.0000000000000041	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0025239_51	phrog_8	47.0	0.0000000000005	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025239_51	UniRef90_UPI001C0F4E36	107.0	3.24e-27	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0025239_51	411461.DORFOR_01130	100.0	1.02e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0025239_51	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0025239_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0025239_51	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0025239_54	K14059	206.2	0	int; integrase	N/A
PHROG	UHGV-0025239_54	phrog_1	212.2	0	integrase	integration and excision
UniRef90	UHGV-0025239_54	UniRef90_UPI0008345DF0	257.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0025239_54	693746.OBV_01970	174.0	0	Phage integrase family	N/A
Pfam	UHGV-0025239_54	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0025239_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0025239_54	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0025239_54	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A