UHGV-0025267 (vOTU-115813)

Viral Genome: UHGV-0025267

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0025267
vOTU ID	vOTU-115813
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_9_2144__NODE_2716_length_35199_cov_6.787398
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.25 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.976
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.17
Jumbo phage	No

Genome content
Genome length (bp)	35,199
GC content	37.41%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	76
CDS density	84%
Average CDS length (bps)	390.00
Total tRNA genes	5
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0025267_4	UniRef90_A0A8D9PGW1	57.8	0.00000000105	HTH psq-type domain-containing protein	N/A
structural_annotation	UHGV-0025267_4	PF05225,COG2886	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_5	phrog_22444	81.4	1.3e-23	N/A	unknown function
UniRef90	UHGV-0025267_5	UniRef90_A0A5S3QIX1	154.0	4.69996e-41	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0025267_5	1121422.AUMW01000042_gene1260	157.0	3.78351e-43	DnaD domain protein	N/A
COG	UHGV-0025267_5	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
eggNOG-mapper	UHGV-0025267_10	658655.HMPREF0988_00895	87.4	3.74e-19	N/A	N/A
structural_annotation	UHGV-0025267_11	PF19923	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025267_14	UniRef90_A0A3R6B3D9	129.0	8.58e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0025267_14	877411.JMMA01000002_gene1483	53.9	0.0000000112	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0025267_14	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0025267_14	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_22	phrog_1233	59.3	7.9e-17	N/A	unknown function
UniRef90	UHGV-0025267_22	UniRef90_A0A345BPX6	84.3	4.89e-19	Metal-dependent hydrolase	N/A
eggNOG-mapper	UHGV-0025267_22	397290.C810_01336	94.0	1.36e-23	N/A	N/A
eggNOG-mapper	UHGV-0025267_23	658655.HMPREF0988_00915	100.0	3.09e-23	N/A	N/A
PHROG	UHGV-0025267_24	phrog_20016	216.2	0	N/A	unknown function
UniRef90	UHGV-0025267_24	UniRef90_A0A285PT46	155.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0025267_24	397290.C810_05214	218.0	0	N/A	N/A
structural_annotation	UHGV-0025267_24	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_25	phrog_16490	177.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0025267_25	397290.C810_01328	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0025267_26	658655.HMPREF0988_00918	75.5	2.65e-17	N/A	N/A
eggNOG-mapper	UHGV-0025267_27	658655.HMPREF0988_00919	94.7	1.86e-22	N/A	N/A
KOfam	UHGV-0025267_29	K14059	254.1	0	int; integrase	N/A
PHROG	UHGV-0025267_29	phrog_1	208.1	0	integrase	integration and excision
UniRef90	UHGV-0025267_29	UniRef90_A0A412RQS9	747.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0025267_29	1235799.C818_02711	371.0	0	Phage integrase family	N/A
Pfam	UHGV-0025267_29	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
Pfam	UHGV-0025267_29	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0025267_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0025267_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0025267_29	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_30	phrog_16129	58.9	3.5e-17	excisionase	integration and excision
UniRef90	UHGV-0025267_30	UniRef90_A0A412RR26	237.0	0	HTH luxR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0025267_30	411489.CLOL250_01459	89.0	1.42e-21	Excisionase from transposon Tn916	N/A
Pfam	UHGV-0025267_30	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
NCBIFam	UHGV-0025267_30	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0025267_30	PF09035,PF00196,MF_00674,NF033787,NF008895,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_32	phrog_424	96.9	2.4e-28	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0025267_32	UniRef90_A0A6L6XK67	422.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0025267_32	1304866.K413DRAFT_1205	261.0	0	sulfate reduction	N/A
COG	UHGV-0025267_32	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0025267_32	PF01507,MF_00063,TIGR02055,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_36	phrog_20593	75.1	4.8e-22	N/A	unknown function
PHROG	UHGV-0025267_37	phrog_22292	60.5	2.6e-17	N/A	unknown function
Pfam	UHGV-0025267_43	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
Pfam	UHGV-0025267_43	PF12773	N/A	N/A	Double zinc ribbon	DZR
PHROG	UHGV-0025267_44	phrog_9804	175.0	0	N/A	unknown function
UniRef90	UHGV-0025267_44	UniRef90_A0A412RQW3	321.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0025267_44	903814.ELI_3550	145.0	2.78004e-41	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0025267_44	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0025267_44	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_46	phrog_8489	184.5	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025267_46	UniRef90_UPI001BB8B78A	208.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-0025267_46	1196322.A370_02071	138.0	5.94e-37	DnaD domain protein	N/A
COG	UHGV-0025267_46	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0025267_47	phrog_2245	78.2	1.1e-22	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0025267_47	UniRef90_A0A373NRP8	96.7	3.19e-24	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0025267_47	742740.HMPREF9474_02290	78.6	8e-18	N/A	N/A
structural_annotation	UHGV-0025267_47	PF12643,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_49	phrog_757	61.9	6e-18	DNA methyltransferase	other
eggNOG-mapper	UHGV-0025267_49	428127.EUBDOL_01513	310.0	0	N/A	N/A
AcrCatalog	UHGV-0025267_49	cluster_47493	178.0	0	NA	N/A
structural_annotation	UHGV-0025267_49	PF00145,MF_00341,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_51	phrog_6724	85.4	6e-25	N/A	unknown function
eggNOG-mapper	UHGV-0025267_51	1463936.JOJI01000043_gene7935	65.1	0.00000000000236	N/A	N/A
eggNOG-mapper	UHGV-0025267_52	397290.C810_01505	142.0	3.37713e-43	N/A	N/A
PHROG	UHGV-0025267_53	phrog_19106	323.1	0	N/A	unknown function
UniRef90	UHGV-0025267_53	UniRef90_A0A412RQV5	327.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0025267_53	658655.HMPREF0988_00875	256.0	0	N/A	N/A
structural_annotation	UHGV-0025267_53	TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_54	phrog_20593	49.5	0.000000000000069	N/A	unknown function
KOfam	UHGV-0025267_56	K03111	125.3	7.7e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0025267_56	phrog_44	133.4	1.6e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025267_56	UniRef90_A0A0M6WU62	196.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0025267_56	585394.RHOM_16640	196.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0025267_56	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0025267_56	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0025267_56	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0025267_56	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0025267_56	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_57	phrog_8684	113.0	1.2e-33	N/A	unknown function
UniRef90	UHGV-0025267_57	UniRef90_A0A3R6DZN9	206.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0025267_57	742723.HMPREF9477_00921	147.0	1.98984e-43	YopX protein	N/A
Pfam	UHGV-0025267_57	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0025267_57	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0025267_57	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_58	phrog_26384	41.4	0.000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0025267_60	397290.C810_01492	55.8	0.0000000962	N/A	N/A
KOfam	UHGV-0025267_64	K06167	46.2	0.00000000000052	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0025267_64	phrog_392	191.5	0	metal-dependent hydrolase	other
UniRef90	UHGV-0025267_64	UniRef90_A0A412RQX2	380.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0025267_64	1122985.HMPREF1991_02241	156.0	1.96182e-44	N/A	N/A
Pfam	UHGV-0025267_64	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
dbAPIS	UHGV-0025267_64	APIS044	N/A	N/A	N/A	N/A
COG	UHGV-0025267_64	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0025267_64	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_65	phrog_9822	177.1	0	N/A	unknown function
PHROG	UHGV-0025267_66	phrog_25456	78.7	5.9e-23	N/A	unknown function
PHROG	UHGV-0025267_67	phrog_2185	294.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025267_67	UniRef90_UPI001BC46C39	481.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0025267_67	658655.HMPREF0988_00886	372.0	0	N/A	N/A
structural_annotation	UHGV-0025267_67	NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0025267_69	K19171	76.4	2.8e-22	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0025267_69	phrog_77	160.0	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025267_69	UniRef90_A0A412RQV0	931.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0025267_69	397290.C810_01461	315.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0025267_69	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0025267_69	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025267_72	742765.HMPREF9457_03017	108.0	6.69e-26	peptidase	N/A
COG	UHGV-0025267_72	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
UniRef90	UHGV-0025267_73	UniRef90_UPI001D0090A6	141.0	1.17008e-42	N/A	N/A
eggNOG-mapper	UHGV-0025267_73	411470.RUMGNA_03231	93.6	2.43e-24	N/A	N/A
Pfam	UHGV-0025267_73	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0025267_73	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0025267_73	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0025267_74	K22300	46.7	0.00000000000064	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0025267_74	phrog_2967	52.8	0.0000000000000074	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025267_74	UniRef90_UPI001D029144	187.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0025267_74	457412.RSAG_00795	111.0	1.43e-29	sequence-specific DNA binding	N/A
COG	UHGV-0025267_74	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0025267_74	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0025267_75	phrog_806	50.9	0.00000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0025267_75	1235802.C823_04880	54.7	0.00000532	N/A	N/A
Pfam	UHGV-0025267_75	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-0025267_75	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025267_76	UniRef90_C0FU63	135.0	4.29001e-40	Tnp_DDE_dom domain-containing protein	N/A
eggNOG-mapper	UHGV-0025267_76	1280698.AUJS01000036_gene43	139.0	2.2701e-42	Transposase DDE domain	N/A
Pfam	UHGV-0025267_76	PF13751	N/A	N/A	Transposase DDE domain	DDE_Tnp_1_6
COG	UHGV-0025267_76	COG3666	N/A	N/A	Transposase, IS1182 family	N/A