UHGV-0025419 (vOTU-084622)

Viral Genome: UHGV-0025419

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0025419
vOTU ID	vOTU-084622
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_J_6_2308__NODE_2144_length_43780_cov_10.743381
Associated BioSample	SAMEA4766217
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9777
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.95
Jumbo phage	No

Genome content
Genome length (bp)	43,780
GC content	53.90%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	93%
Average CDS length (bps)	794.24
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0025419_1	phrog_443	56.0	0.0000000000000013	holin	lysis
UniRef90	UHGV-0025419_1	UniRef90_UPI001BB47E53	99.0	6.68e-26	holin	N/A
eggNOG-mapper	UHGV-0025419_1	1235797.C816_04172	91.3	1.13e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0025419_1	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0025419_1	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_2	phrog_22978	841.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0025419_2	748224.HMPREF9436_01406	379.0	0	N/A	N/A
Pfam	UHGV-0025419_2	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
Pfam	UHGV-0025419_2	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
Pfam	UHGV-0025419_2	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
PHROG	UHGV-0025419_3	phrog_2649	74.4	2.7e-21	endolysin	lysis
UniRef90	UHGV-0025419_3	UniRef90_A0A358ARU4	189.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0025419_3	1410650.JHWL01000003_gene2815	122.0	5.7e-28	N/A	N/A
Pfam	UHGV-0025419_3	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0025419_3	PF01471,TIGR02869	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_4	phrog_19111	57.2	1.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0025419_4	1499967.BAYZ01000016_gene6532	83.2	0.0000000000000269	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0025419_4	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0025419_7	phrog_511	200.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0025419_7	1226322.HMPREF1545_00785	313.0	0	N/A	N/A
structural_annotation	UHGV-0025419_7	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_8	phrog_12105	127.6	6e-38	N/A	unknown function
eggNOG-mapper	UHGV-0025419_8	1226322.HMPREF1545_03850	92.8	1.41e-22	N/A	N/A
PHROG	UHGV-0025419_10	phrog_1357	206.4	0	major head protein	head and packaging
UniRef90	UHGV-0025419_10	UniRef90_A0A2V2CFL5	530.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0025419_10	1410650.JHWL01000003_gene2830	277.0	0	N/A	N/A
NCBIFam	UHGV-0025419_10	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0025419_10	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_11	phrog_13908	189.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0025419_11	1410650.JHWL01000003_gene2831	99.0	7.26e-21	N/A	N/A
KOfam	UHGV-0025419_12	K07584	44.8	0.0000000000023	N/A	N/A
PHROG	UHGV-0025419_12	phrog_4478	42.7	0.000000000008	peptidase	other
UniRef90	UHGV-0025419_12	UniRef90_UPI001C821BAD	57.4	0.0000000127	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0025419_12	1232453.BAIF02000011_gene3357	48.5	0.0000048	Cysteine protease Prp	N/A
Pfam	UHGV-0025419_12	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0025419_12	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025419_12	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_13	phrog_156	302.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0025419_13	1410650.JHWL01000003_gene2833	540.0	0	N/A	N/A
structural_annotation	UHGV-0025419_13	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0025419_14	K06909	134.1	1.4e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0025419_14	phrog_979	115.7	9.7e-36	terminase large subunit	head and packaging
UniRef90	UHGV-0025419_14	UniRef90_A0A810Q5R0	602.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0025419_14	1410650.JHWL01000003_gene2834	595.0	0	N/A	N/A
Pfam	UHGV-0025419_14	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0025419_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0025419_14	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_15	phrog_1206	40.6	0.000000000034	terminase small subunit	head and packaging
PHROG	UHGV-0025419_17	phrog_248	52.6	0.000000000000011	transcriptional activator	transcription regulation
UniRef90	UHGV-0025419_17	UniRef90_UPI001D0837DD	140.0	7.16e-40	N/A	N/A
eggNOG-mapper	UHGV-0025419_17	1487921.DP68_08815	51.2	0.00000488	N/A	N/A
structural_annotation	UHGV-0025419_17	PF07374,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025419_18	UniRef90_A0A1I0VIB3	54.3	0.000000334	MazG nucleotide pyrophosphohydrolase domain-containing protein	N/A
structural_annotation	UHGV-0025419_18	PF02888	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_22	phrog_5781	88.3	8.9e-26	N/A	unknown function
UniRef90	UHGV-0025419_22	UniRef90_A0A2V2FSM6	95.5	1.95e-23	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0025419_22	667121.ET1_08_00770	87.4	3.51e-21	N/A	N/A
Pfam	UHGV-0025419_22	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0025419_22	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0025419_22	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_23	phrog_1029	206.4	0	N/A	unknown function
UniRef90	UHGV-0025419_23	UniRef90_M1QIB9	145.0	3.56e-39	Phage-related protein	N/A
eggNOG-mapper	UHGV-0025419_23	1203606.HMPREF1526_01890	238.0	0	N/A	N/A
structural_annotation	UHGV-0025419_23	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_24	phrog_997	110.9	9.6e-33	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025419_24	UniRef90_R6MCS9	96.3	3.21e-23	N/A	N/A
eggNOG-mapper	UHGV-0025419_24	1203606.HMPREF1526_01889	120.0	2.36e-33	replication terminator protein, phage associated	N/A
KOfam	UHGV-0025419_25	K19779	40.4	0.000000000048	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0025419_25	phrog_599	48.9	0.00000000000015	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0025419_25	UniRef90_UPI00189C0965	53.5	0.0000000459	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0025419_25	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0025419_25	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0025419_25	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0025419_25	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_26	phrog_9474	93.6	2.5e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025419_26	UniRef90_A0A1I7FTR4	80.1	0.0000000000000558	DnaD and phage-associated domain-containing protein	N/A
eggNOG-mapper	UHGV-0025419_26	138119.DSY2199	68.6	0.000000000134	Replication initiation and membrane attachment	N/A
COG	UHGV-0025419_26	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0025419_27	K06167	68.0	1.5e-19	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0025419_27	phrog_392	184.6	0	metal-dependent hydrolase	other
UniRef90	UHGV-0025419_27	UniRef90_UPI00195A5026	241.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0025419_27	1203606.HMPREF1526_00311	186.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0025419_27	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
dbAPIS	UHGV-0025419_27	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-0025419_27	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0025419_27	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_28	phrog_862	58.2	1.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0025419_28	1203606.HMPREF1526_00310	140.0	4.16e-39	N/A	N/A
structural_annotation	UHGV-0025419_28	PF05037,COG2965	N/A	N/A	N/A	N/A
KOfam	UHGV-0025419_29	K19171	66.2	5.1e-20	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0025419_29	phrog_77	214.6	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025419_29	UniRef90_A0A3A9HXV3	365.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0025419_29	1382358.JHVN01000024_gene1691	298.0	0	N/A	N/A
Pfam	UHGV-0025419_29	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0025419_29	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0025419_29	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025419_34	526218.Sterm_1392	52.4	0.00000354	N/A	N/A
KOfam	UHGV-0025419_35	K22300	67.2	3.5e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0025419_35	phrog_8	53.6	0.0000000000000048	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025419_35	UniRef90_E2ZIF0	110.0	1.9e-28	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0025419_35	748224.HMPREF9436_01444	110.0	3.18e-29	N/A	N/A
PADLOC	UHGV-0025419_35	retron_type_VI_hth_cluster2_1	44.7	0.0000000000025	N/A	Retron
Pfam	UHGV-0025419_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025419_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0025419_35	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0025419_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0025419_38	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_39	phrog_14556	40.0	0.000000000034	N/A	unknown function
eggNOG-mapper	UHGV-0025419_39	246194.CHY_1699	67.8	0.0000000000209	Staphylococcal nuclease homologue	N/A
COG	UHGV-0025419_39	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
KOfam	UHGV-0025419_40	K06400	342.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0025419_40	phrog_95	326.9	0	integrase	integration and excision
UniRef90	UHGV-0025419_40	UniRef90_A0A6G3M4R6	626.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0025419_40	1120746.CCNL01000014_gene2079	415.0	0	Recombinase	N/A
Pfam	UHGV-0025419_40	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0025419_40	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0025419_40	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0025419_40	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0025419_40	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025419_42	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0025419_43	phrog_16490	62.1	1.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0025419_43	641112.ACOK01000103_gene525	109.0	7.26e-27	N/A	N/A
PHROG	UHGV-0025419_48	phrog_14030	140.8	7.49975e-42	N/A	unknown function
UniRef90	UHGV-0025419_48	UniRef90_UPI00164AB959	242.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0025419_48	1095750.HMPREF9970_0318	150.0	9.27001e-41	Putative cell wall binding repeat	N/A
Pfam	UHGV-0025419_48	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0025419_48	PF09374	N/A	N/A	Predicted Peptidoglycan domain	PG_binding_3
COG	UHGV-0025419_48	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
PHROG	UHGV-0025419_51	phrog_17134	46.2	0.00000000000025	N/A	unknown function
UniRef90	UHGV-0025419_51	UniRef90_UPI0018835F0C	327.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0025419_51	476272.RUMHYD_00002	114.0	1e-23	N/A	N/A