UHGV-0025476 (vOTU-076241)

Viral Genome: UHGV-0025476

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0025476
vOTU ID	vOTU-076241
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_N_6_2333__NODE_1395_length_37601_cov_6.141350
Associated BioSample	SAMEA4766240
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9699
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.67
Jumbo phage	No

Genome content
Genome length (bp)	37,601
GC content	54.86%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	91%
Average CDS length (bps)	658.73
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0025476_1	phrog_18190	100.8	4.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0025476_1	411471.SUBVAR_06932	307.0	0	N/A	N/A
structural_annotation	UHGV-0025476_1	PF14594,PF16351,PF04620,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_2	phrog_1194	49.5	0.000000000000059	N/A	unknown function
eggNOG-mapper	UHGV-0025476_2	411471.SUBVAR_06933	105.0	1.91e-27	N/A	N/A
structural_annotation	UHGV-0025476_2	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_3	phrog_6900	232.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0025476_3	UniRef90_A0A316Q0J4	324.0	0	PblA	N/A
eggNOG-mapper	UHGV-0025476_3	748224.HMPREF9436_00699	290.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0025476_3	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025476_3	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_4	phrog_1633	125.1	3.1e-37	N/A	unknown function
UniRef90	UHGV-0025476_4	UniRef90_UPI0015CCAF51	109.0	2.34e-28	N/A	N/A
eggNOG-mapper	UHGV-0025476_4	873448.STRPO_0293	104.0	2.37e-27	N/A	N/A
Pfam	UHGV-0025476_4	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0025476_4	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_5	phrog_1526	69.8	3.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0025476_5	875454.BAEW01000017_gene1589	60.8	0.0000000000437	N/A	N/A
PHROG	UHGV-0025476_6	phrog_117	166.6	0	major tail protein	tail
UniRef90	UHGV-0025476_6	UniRef90_A0A1Q6T308	212.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0025476_6	1121864.OMO_02158	206.0	0	domain, Protein	N/A
COG	UHGV-0025476_6	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025476_6	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_7	phrog_123	61.2	1.8e-17	tail terminator	connector
UniRef90	UHGV-0025476_7	UniRef90_Q7Y4H9	110.0	3.47e-29	Gp45	N/A
eggNOG-mapper	UHGV-0025476_7	879308.HMPREF9130_1238	119.0	2.56e-33	N/A	N/A
structural_annotation	UHGV-0025476_7	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_8	phrog_387	66.3	3.5e-19	neck protein	connector
eggNOG-mapper	UHGV-0025476_8	936375.HMPREF1152_0683	69.3	0.0000000000000167	N/A	N/A
PHROG	UHGV-0025476_9	phrog_501	69.8	4e-20	head closure Hc1	connector
UniRef90	UHGV-0025476_9	UniRef90_D2BQF2	128.0	2.59e-36	N/A	N/A
eggNOG-mapper	UHGV-0025476_9	748224.HMPREF9436_00693	171.0	0	N/A	N/A
structural_annotation	UHGV-0025476_9	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_10	phrog_137	51.4	0.000000000000015	head-tail adaptor Ad1	connector
UniRef90	UHGV-0025476_10	UniRef90_E2ZGA8	163.0	0	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0025476_10	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_11	phrog_10	134.8	7.4e-40	major head protein	head and packaging
UniRef90	UHGV-0025476_11	UniRef90_A0A1Y4TJU9	452.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0025476_11	748224.HMPREF9436_00690	452.0	0	Phage capsid family	N/A
Pfam	UHGV-0025476_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0025476_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0025476_11	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0025476_11	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_12	phrog_1793	95.7	6.5e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-0025476_12	UniRef90_A0A3E4GMR3	129.0	1.61e-35	N/A	N/A
eggNOG-mapper	UHGV-0025476_12	1123263.AUKY01000068_gene501	133.0	1.64e-37	N/A	N/A
structural_annotation	UHGV-0025476_12	PF14265	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025476_13	PF06442,MF_01194,NF000331,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_14	phrog_193	128.6	5.6e-38	head maturation protease	head and packaging
UniRef90	UHGV-0025476_14	UniRef90_A0A6N8H118	360.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0025476_14	748224.HMPREF9436_01469	417.0	0	N/A	N/A
Pfam	UHGV-0025476_14	PF21814	N/A	N/A	N/A	DUF6883
COG	UHGV-0025476_14	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-0025476_14	PF11429	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_15	phrog_104	220.3	0	portal protein	head and packaging
UniRef90	UHGV-0025476_15	UniRef90_A0A3E2U200	745.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0025476_15	748224.HMPREF9436_01468	746.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0025476_15	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_16	phrog_9	139.8	2.20004e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0025476_16	UniRef90_UPI001D0087E2	457.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0025476_16	1410630.JNKP01000001_gene1822	632.0	0	phage terminase, large subunit	N/A
COG	UHGV-0025476_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0025476_16	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_17	phrog_1066	57.7	1.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0025476_17	445975.COLSTE_02166	77.4	2.82e-16	N/A	N/A
AcrCatalog	UHGV-0025476_17	cluster_154855	71.6	1.9e-18	NA	N/A
PHROG	UHGV-0025476_18	phrog_338	60.5	3.5e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025476_18	UniRef90_UPI0015F33F36	173.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0025476_18	748224.HMPREF9436_01465	174.0	0	N/A	N/A
structural_annotation	UHGV-0025476_19	PF11026	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025476_21	1297617.JPJD01000059_gene2640	132.0	9.85e-38	N/A	N/A
NCBIFam	UHGV-0025476_21	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0025476_21	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_27	phrog_824	140.6	5.09933e-42	N/A	unknown function
UniRef90	UHGV-0025476_27	UniRef90_R7GUQ9	150.0	1.82169e-44	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0025476_27	742738.HMPREF9460_02501	132.0	3.37e-38	VRR_NUC	N/A
Pfam	UHGV-0025476_27	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0025476_27	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-0025476_28	K17677	408.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0025476_28	phrog_16	235.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025476_28	UniRef90_UPI001C63D655	722.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0025476_28	742738.HMPREF9460_02499	642.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0025476_28	mREase_IV_00005	113.7	1.4e-33	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0025476_28	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0025476_28	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0025476_28	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0025476_28	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_29	phrog_8841	445.1	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025476_29	UniRef90_UPI001897B4BF	571.0	0	N/A	N/A
eggNOG-mapper	UHGV-0025476_29	742738.HMPREF9460_02495	538.0	0	N/A	N/A
Pfam	UHGV-0025476_29	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0025476_29	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0025476_29	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025476_29	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0025476_30	K02316	83.5	2.7e-24	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0025476_30	phrog_11992	119.2	3.7e-35	N/A	unknown function
UniRef90	UHGV-0025476_30	UniRef90_A0A7C6QT44	100.0	7.52e-23	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0025476_30	658086.HMPREF0994_05512	106.0	6.88e-24	N/A	N/A
PADLOC	UHGV-0025476_30	drt-cluster192	61.3	2.3e-17	DRT	DRT
Pfam	UHGV-0025476_30	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0025476_30	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
KOfam	UHGV-0025476_31	K03111	134.2	1.4e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0025476_31	phrog_44	142.7	2.10055e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025476_31	UniRef90_A0A1Q6T150	196.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0025476_31	411471.SUBVAR_04646	188.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0025476_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0025476_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0025476_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0025476_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0025476_31	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_32	phrog_1227	137.9	5.99994e-41	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025476_32	UniRef90_UPI001D074BCC	114.0	7.36e-27	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0025476_32	861454.HMPREF9099_00347	106.0	1.6e-24	N/A	N/A
Pfam	UHGV-0025476_32	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0025476_32	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0025476_32	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_33	phrog_21613	104.3	9e-31	N/A	unknown function
eggNOG-mapper	UHGV-0025476_33	1300143.CCAV010000006_gene4343	77.8	0.00000000000000164	N/A	N/A
UniRef90	UHGV-0025476_37	UniRef90_A0A367GHD7	154.0	0	HTH_17 domain-containing protein	N/A
Pfam	UHGV-0025476_37	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-0025476_38	phrog_4583	44.0	0.0000000000029	transcriptional repressor	transcription regulation
UniRef90	UHGV-0025476_38	UniRef90_UPI000A0213FB	84.0	9.74e-20	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0025476_38	1680.BADO_1596	47.4	0.00000343	BetR domain	N/A
Pfam	UHGV-0025476_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0025476_38	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025476_39	PF00227,MF_02113_A,TIGR03634,COG0638	N/A	N/A	N/A	N/A
KOfam	UHGV-0025476_42	K22300	44.9	0.0000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0025476_42	phrog_8	45.0	0.0000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025476_42	UniRef90_A0A367GFH2	102.0	2.35e-27	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0025476_42	796942.HMPREF9623_01770	55.5	0.0000000405	N/A	N/A
Pfam	UHGV-0025476_42	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
COG	UHGV-0025476_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0025476_42	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0025476_43	K01356	143.0	3.30006e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0025476_43	phrog_4	115.5	5.8e-34	transcriptional repressor	transcription regulation
UniRef90	UHGV-0025476_43	UniRef90_A0A1Q6T3E1	293.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0025476_43	411483.FAEPRAA2165_03041	174.0	0	N/A	N/A
Pfam	UHGV-0025476_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0025476_43	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0025476_43	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0025476_43	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0025476_44	K07451	56.5	3.8e-16	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0025476_44	phrog_589	57.1	3.2e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025476_44	UniRef90_A0A7M2RF22	419.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0025476_44	386415.NT01CX_1757	349.0	0	HNH endonuclease	N/A
Pfam	UHGV-0025476_44	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0025476_44	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0025476_44	PF01844,NF040563,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0025476_45	K14059	194.3	0	int; integrase	N/A
PHROG	UHGV-0025476_45	phrog_1	197.0	0	integrase	integration and excision
UniRef90	UHGV-0025476_45	UniRef90_UPI00195B6EEA	457.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0025476_45	1235797.C816_00779	176.0	0	Phage integrase family	N/A
Pfam	UHGV-0025476_45	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0025476_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0025476_45	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0025476_45	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_46	phrog_1129	62.8	4.1e-18	holin	lysis
UniRef90	UHGV-0025476_46	UniRef90_A0A367FT42	169.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0025476_46	693746.OBV_13280	112.0	2.5e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0025476_46	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0025476_46	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_47	phrog_4105	102.7	2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0025476_47	657322.FPR_27220	149.0	2.8026e-45	N/A	N/A
KOfam	UHGV-0025476_48	K19304	124.6	1.1e-36	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0025476_48	phrog_10030	103.5	8.2e-31	tail length tape measure protein	tail
UniRef90	UHGV-0025476_48	UniRef90_A0A367G061	321.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0025476_48	1382304.JNIL01000001_gene2694	100.0	4.49e-22	G5	N/A
Pfam	UHGV-0025476_48	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0025476_48	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0025476_48	PF01551,NF040883	N/A	N/A	N/A	N/A
KOfam	UHGV-0025476_49	K10804	93.1	3e-27	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0025476_49	phrog_5240	116.4	3.1e-34	tail fiber protein	tail
eggNOG-mapper	UHGV-0025476_49	483218.BACPEC_02431	99.8	8.06e-20	GDSL-like Lipase/Acylhydrolase family	N/A
Pfam	UHGV-0025476_49	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0025476_49	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0025476_49	PF13472,PF10651,COG2845	N/A	N/A	N/A	N/A
PHROG	UHGV-0025476_52	phrog_1775	41.2	4.4e-18	minor head protein	head and packaging