UHGV-0025548 (vOTU-022465)

Viral Genome: UHGV-0025548

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0025548
vOTU ID	vOTU-022465
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_B_17_2661__NODE_1215_length_39579_cov_5.868007
Associated BioSample	SAMEA4766399
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.05 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9612
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.97
Jumbo phage	No

Genome content
Genome length (bp)	39,579
GC content	32.81%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	92%
Average CDS length (bps)	791.41
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0025548_1	768706.Desor_4360	375.0	0	N/A	N/A
KOfam	UHGV-0025548_2	K03657	322.3	0	uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]	N/A
PHROG	UHGV-0025548_2	phrog_1967	238.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025548_2	UniRef90_G7WJC5	415.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0025548_2	768706.Desor_4359	415.0	0	PFAM UvrD REP helicase	N/A
PADLOC	UHGV-0025548_2	GajB_00012	160.4	0	UrvD helicase	Gabija
Pfam	UHGV-0025548_2	PF00580	N/A	N/A	UvrD/REP helicase N-terminal domain	UvrD-helicase
Pfam	UHGV-0025548_2	PF13361	N/A	N/A	UvrD-like helicase C-terminal domain	UvrD_C
COG	UHGV-0025548_2	COG0210	N/A	N/A	Superfamily I DNA or RNA helicase	N/A
structural_annotation	UHGV-0025548_2	PF00580,PF13361,MF_01920,TIGR01075,COG0210	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025548_3	332101.JIBU02000009_gene766	67.4	0.000000000000177	N/A	N/A
KOfam	UHGV-0025548_4	K07273	244.2	0	acm; lysozyme	N/A
PHROG	UHGV-0025548_4	phrog_291	199.1	0	endolysin	lysis
UniRef90	UHGV-0025548_4	UniRef90_A0A7X1LWI3	241.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0025548_4	556261.HMPREF0240_03317	223.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0025548_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0025548_4	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0025548_4	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0025548_4	PF01183,PF01476,TIGR02899,NF007360,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0025548_6	phrog_17472	48.7	7.3e-31	tail protein	tail
eggNOG-mapper	UHGV-0025548_6	1408428.JNJP01000079_gene3365	84.7	0.0000000000000519	Phage tail-collar fibre protein	N/A
COG	UHGV-0025548_6	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0025548_6	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0025548_7	phrog_6616	523.4	0	tail protein	tail
UniRef90	UHGV-0025548_7	UniRef90_UPI00085BC306	385.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0025548_7	476272.RUMHYD_01992	197.0	0	N/A	N/A
Pfam	UHGV-0025548_7	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-0025548_8	phrog_1194	107.3	8.6e-32	N/A	unknown function
UniRef90	UHGV-0025548_8	UniRef90_A0A0V8EA29	76.3	0.00000000000000168	N/A	N/A
eggNOG-mapper	UHGV-0025548_8	1499683.CCFF01000017_gene2921	71.6	0.0000000000000167	N/A	N/A
Pfam	UHGV-0025548_8	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0025548_8	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
KOfam	UHGV-0025548_9	K23779	66.1	8.8e-19	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0025548_9	phrog_8	82.0	1e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025548_9	UniRef90_A0A1C7G3C3	108.0	8.15e-29	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0025548_9	537013.CLOSTMETH_02702	85.9	1.05e-20	N/A	N/A
PADLOC	UHGV-0025548_9	retron_type_VI_hth_cluster2_1	53.6	0.0000000000000057	N/A	Retron
Pfam	UHGV-0025548_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025548_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0025548_9	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0025548_10	phrog_289	62.7	6e-18	GTP-binding domain	other
UniRef90	UHGV-0025548_10	UniRef90_UPI00143B488D	139.0	2.14e-39	SLOG family protein	N/A
eggNOG-mapper	UHGV-0025548_10	1235792.C808_02115	112.0	3.24e-29	N/A	N/A
Pfam	UHGV-0025548_10	PF06908	N/A	N/A	YspA SLOG family	YpsA
COG	UHGV-0025548_10	COG4474	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025548_10	PF06908,MF_01575,NF010181,COG4474	N/A	N/A	N/A	N/A
PHROG	UHGV-0025548_11	phrog_1535	136.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0025548_11	UniRef90_A0A1C5PIN9	365.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0025548_11	1120746.CCNL01000014_gene2105	348.0	0	tape measure	N/A
COG	UHGV-0025548_11	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025548_13	PF16478	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025548_14	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025548_15	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025548_16	UniRef90_A0A7G9WJZ3	144.0	2.87995e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0025548_16	279010.BL05128	56.6	0.0000000464	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-0025548_16	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025548_17	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025548_18	UniRef90_A0A7C7ERG0	81.6	6.71e-18	DNA-packaging protein	N/A
Pfam	UHGV-0025548_18	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
PHROG	UHGV-0025548_20	phrog_29	204.5	0	major head protein	head and packaging
UniRef90	UHGV-0025548_20	UniRef90_A0A357WU47	486.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0025548_20	1347368.HG964404_gene4993	314.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0025548_20	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0025548_20	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0025548_21	phrog_909	97.8	6.9e-29	major head protein	head and packaging
eggNOG-mapper	UHGV-0025548_21	1347368.HG964404_gene4994	88.6	4.27e-21	N/A	N/A
UniRef90	UHGV-0025548_22	UniRef90_A0A7G9WJY8	72.0	0.000000000004	N/A	N/A
Pfam	UHGV-0025548_22	PF14265	N/A	N/A	N/A	DUF4355
PHROG	UHGV-0025548_23	phrog_64	236.6	0	portal protein	head and packaging
UniRef90	UHGV-0025548_23	UniRef90_UPI001BAB50B9	511.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0025548_23	1232453.BAIF02000058_gene1625	224.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0025548_23	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0025548_23	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0025548_23	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0025548_24	phrog_38	207.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0025548_24	UniRef90_A0A7G9WJY4	549.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0025548_24	1121866.AUGK01000003_gene1428	387.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0025548_24	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0025548_24	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025548_24	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025548_25	UniRef90_A0A847C5V3	129.0	2.21e-36	MmcQ/YjbR family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0025548_25	985665.HPL003_12755	116.0	3.75e-32	YjbR	N/A
Pfam	UHGV-0025548_25	PF04237	N/A	N/A	YjbR	YjbR
COG	UHGV-0025548_25	COG2315	N/A	N/A	Predicted DNA-binding protein with 'double-wing' structural motif, MmcQ/YjbR family	N/A
structural_annotation	UHGV-0025548_25	PF04237,NF007603,COG2315	N/A	N/A	N/A	N/A
KOfam	UHGV-0025548_26	K22300	42.6	0.000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0025548_26	UniRef90_A0A7G9WJY2	61.6	0.000000000169	Helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0025548_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025548_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0025548_27	phrog_15863	138.4	3.00004e-41	N/A	unknown function
UniRef90	UHGV-0025548_27	UniRef90_A0A3D2HRL5	166.0	0	Molecular chaperone DnaJ	N/A
eggNOG-mapper	UHGV-0025548_27	888064.HMPREF9088_2252	140.0	7.15e-40	DnaJ molecular chaperone homology domain	N/A
Pfam	UHGV-0025548_27	PF00226	N/A	N/A	DnaJ domain	DnaJ
COG	UHGV-0025548_27	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
PHROG	UHGV-0025548_28	phrog_19458	267.3	0	primase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0025548_28	411459.RUMOBE_01108	234.0	0	N/A	N/A
COG	UHGV-0025548_28	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
KOfam	UHGV-0025548_33	K14060	152.6	2.8026e-45	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0025548_33	phrog_125	186.4	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025548_33	UniRef90_UPI00062D70DE	242.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0025548_33	1499689.CCNN01000004_gene313	237.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0025548_33	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0025548_33	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0025548_33	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025548_35	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A
KOfam	UHGV-0025548_37	K02314	372.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0025548_37	phrog_19	320.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025548_37	UniRef90_A0A3D1LG85	263.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0025548_37	1385514.N782_06825	241.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0025548_37	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0025548_37	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0025548_37	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0025548_37	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0025548_38	phrog_391	98.7	4.1e-29	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025548_38	UniRef90_UPI00124827DB	176.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0025548_38	642492.Clole_1831	119.0	5.93e-30	Helix-turn-helix domain	N/A
Pfam	UHGV-0025548_38	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0025548_38	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-0025548_38	PF04492,TIGR01610,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-0025548_40	K01160	47.5	0.00000000000044	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0025548_40	phrog_140	113.7	1.4e-33	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025548_40	UniRef90_A0A3D0M1J0	135.0	2.46e-38	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0025548_40	545697.HMPREF0216_02819	114.0	1.3e-30	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0025548_40	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0025548_40	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0025548_40	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0025548_41	K07455	171.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0025548_41	phrog_148	189.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025548_41	UniRef90_A0A3P6KL41	183.0	0	Phage-related rekombinase protein	N/A
eggNOG-mapper	UHGV-0025548_41	742725.HMPREF9450_02076	184.0	0	RecT family	N/A
Pfam	UHGV-0025548_41	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0025548_41	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0025548_41	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0025548_41	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0025548_42	phrog_10477	78.6	1e-22	exonuclease	DNA, RNA and nucleotide metabolism
PHROG	UHGV-0025548_43	phrog_298	51.7	0.000000000000007	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025548_43	UniRef90_A0A1C5T0L2	117.0	1.14e-29	PD-(D/E)XK nuclease superfamily	N/A
eggNOG-mapper	UHGV-0025548_43	754027.HMPREF9554_00708	65.9	0.000000000528	N/A	N/A
structural_annotation	UHGV-0025548_43	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A