UHGV-0025929 (vOTU-145554)

Viral Genome: UHGV-0025929

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0025929
vOTU ID	vOTU-145554
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_F_21_1974__NODE_13913_length_9826_cov_6.165350
Associated BioSample	SAMEA4766135
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.23 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9726
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.75
Jumbo phage	No

Genome content
Genome length (bp)	9,826
GC content	52.50%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	17
CDS density	92%
Average CDS length (bps)	534.18
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0025929_1	K14059	324.4	0	int; integrase	N/A
PHROG	UHGV-0025929_1	phrog_1	239.7	0	integrase	integration and excision
UniRef90	UHGV-0025929_1	UniRef90_UPI001F33A9B4	555.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0025929_1	877414.ATWA01000018_gene2094	345.0	0	Phage integrase family	N/A
Pfam	UHGV-0025929_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0025929_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0025929_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0025929_1	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025929_2	1410624.JNKK01000001_gene663	66.6	0.0000000000746	N/A	N/A
COG	UHGV-0025929_2	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
KOfam	UHGV-0025929_3	K22300	41.7	0.000000000019	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0025929_3	phrog_8	55.7	9.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025929_3	UniRef90_G9YPB4	78.6	0.0000000000000275	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0025929_3	742738.HMPREF9460_00731	67.0	0.0000000000947	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0025929_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0025929_4	phrog_17740	52.2	0.0000000000000075	N/A	unknown function
eggNOG-mapper	UHGV-0025929_4	198467.NP92_14535	50.8	0.0000000795	N/A	N/A
Pfam	UHGV-0025929_4	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0025929_4	PF13560,COG3423	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025929_5	UniRef90_A0A417NGM9	134.0	4.62e-40	DNA-binding protein	N/A
Pfam	UHGV-0025929_5	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0025929_5	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0025929_5	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0025929_5	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0025929_6	phrog_2113	67.9	9.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0025929_6	1298920.KI911353_gene2059	57.8	0.00000000924	N/A	N/A
structural_annotation	UHGV-0025929_6	PF21715,TIGR00122,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0025929_7	phrog_5708	221.6	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025929_7	UniRef90_UPI0018994D15	200.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-0025929_7	1507.HMPREF0262_00303	187.0	0	DnaD domain protein	N/A
COG	UHGV-0025929_7	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0025929_7	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0025929_8	K02314	285.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0025929_8	phrog_19	246.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025929_8	UniRef90_A0A3D1XEC3	753.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0025929_8	742738.HMPREF9460_00852	186.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0025929_8	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0025929_8	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0025929_8	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0025929_8	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0025929_10	K03091	43.2	0.0000000000068	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-0025929_10	UniRef90_UPI001F4290AF	144.0	4.5e-40	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0025929_10	COG0568	N/A	N/A	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	N/A
structural_annotation	UHGV-0025929_10	PF07638,MF_00959,NF006147,COG0568	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025929_11	UniRef90_A0A3A9TJA5	69.3	0.00000000000114	HTH_8 domain-containing protein	N/A
eggNOG-mapper	UHGV-0025929_11	1009370.ALO_17461	68.2	0.000000000000512	N/A	N/A
PHROG	UHGV-0025929_15	phrog_11299	77.9	1.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0025929_15	693746.OBV_18160	171.0	0	N/A	N/A
structural_annotation	UHGV-0025929_15	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0025929_16	phrog_706	118.1	6.1e-35	N/A	unknown function
UniRef90	UHGV-0025929_16	UniRef90_UPI001D069FB9	213.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0025929_16	693746.OBV_18170	201.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0025929_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0025929_16	PF06854	N/A	N/A	N/A	N/A