UHGV-0026977 (vOTU-043774)

Viral Genome: UHGV-0026977

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0026977
vOTU ID	vOTU-043774
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_F_10_2221__NODE_1223_length_41102_cov_11.416356
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9823
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.99
Jumbo phage	No

Genome content
Genome length (bp)	41,079
GC content	54.13%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	90%
Average CDS length (bps)	561.27
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0026977_1	phrog_4433	139.3	2.70002e-41	N/A	unknown function
eggNOG-mapper	UHGV-0026977_1	439375.Oant_2324	101.0	2.22e-23	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0026977_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0026977_1	PF12120,NF000066	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026977_5	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-0026977_6	K22300	49.4	0.000000000000093	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0026977_6	phrog_2967	49.7	0.000000000000064	transcriptional regulator	transcription regulation
UniRef90	UHGV-0026977_6	UniRef90_A0A844DFR0	191.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0026977_6	748224.HMPREF9436_01444	139.0	1.09e-40	N/A	N/A
Pfam	UHGV-0026977_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0026977_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0026977_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026977_9	UniRef90_A0A5A5U028	83.6	6.29e-17	SAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0026977_9	1280696.ATVY01000034_gene3237	103.0	2.6e-24	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
Pfam	UHGV-0026977_9	PF08461	N/A	N/A	Ribonuclease R winged-helix domain	HTH_12
KOfam	UHGV-0026977_12	K15773	44.3	0.0000000000033	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0026977_12	phrog_2328	41.9	0.0000000000086	transcriptional repressor	transcription regulation
UniRef90	UHGV-0026977_12	UniRef90_A0A6N7TLT0	207.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0026977_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0026977_12	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0026977_13	K14059	146.3	3.40516e-43	int; integrase	N/A
PHROG	UHGV-0026977_13	phrog_1	165.6	0	integrase	integration and excision
UniRef90	UHGV-0026977_13	UniRef90_A0A6N7TNQ4	680.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0026977_13	411471.SUBVAR_05137	249.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0026977_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0026977_13	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0026977_13	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0026977_15	476272.RUMHYD_01772	55.1	0.000000184	N/A	N/A
structural_annotation	UHGV-0026977_15	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_16	phrog_20016	212.7	0	N/A	unknown function
UniRef90	UHGV-0026977_16	UniRef90_A0A285PT46	209.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0026977_16	1226322.HMPREF1545_00077	185.0	0	N/A	N/A
structural_annotation	UHGV-0026977_16	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_18	phrog_16490	152.7	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0026977_18	1408437.JNJN01000043_gene803	141.0	1.69e-38	N/A	N/A
PHROG	UHGV-0026977_19	phrog_22984	79.1	2.9e-23	N/A	unknown function
PHROG	UHGV-0026977_20	phrog_21718	110.7	1.1e-32	N/A	unknown function
eggNOG-mapper	UHGV-0026977_20	397290.C810_05210	77.8	5.91e-16	N/A	N/A
PHROG	UHGV-0026977_21	phrog_3754	94.4	9.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0026977_21	1485543.JMME01000025_gene2462	103.0	2.79e-27	N/A	N/A
eggNOG-mapper	UHGV-0026977_22	1160721.RBI_I00206	59.7	0.0000000000725	N/A	N/A
structural_annotation	UHGV-0026977_22	PF19839,NF040976	N/A	N/A	N/A	N/A
KOfam	UHGV-0026977_25	K07741	58.3	2.5e-16	antB; anti-repressor protein	N/A
PHROG	UHGV-0026977_25	phrog_130	213.9	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0026977_25	UniRef90_A0A412EKS7	209.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0026977_25	1408422.JHYF01000021_gene999	189.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0026977_25	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0026977_25	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0026977_25	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0026977_25	PF09669,PF03374,TIGR02681,COG3646,COG3645	N/A	N/A	N/A	N/A
KOfam	UHGV-0026977_27	K24213	78.4	5.7e-23	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0026977_27	phrog_5073	112.3	3.3e-33	tail fiber protein	tail
UniRef90	UHGV-0026977_27	UniRef90_UPI0018835F0C	335.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0026977_27	411483.FAEPRAA2165_00757	166.0	1.7306e-42	N/A	N/A
Pfam	UHGV-0026977_27	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0026977_28	phrog_15303	117.2	7.1e-35	N/A	unknown function
KOfam	UHGV-0026977_30	K07273	178.2	0	acm; lysozyme	N/A
PHROG	UHGV-0026977_30	phrog_291	148.9	3.78351e-44	endolysin	lysis
UniRef90	UHGV-0026977_30	UniRef90_E2ZES5	339.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0026977_30	748224.HMPREF9436_00154	339.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0026977_30	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0026977_30	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0026977_30	PF01183,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0026977_31	1304866.K413DRAFT_1235	53.1	0.00000276	PFAM Phage tail protein	N/A
COG	UHGV-0026977_31	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0026977_31	PF11681,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_32	phrog_3558	276.7	0	tail protein	tail
UniRef90	UHGV-0026977_32	UniRef90_A0A844DGT5	1179.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0026977_32	1391188.A0A068EMP3_9CAUD	129.0	1.7e-27	N/A	N/A
Pfam	UHGV-0026977_32	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
structural_annotation	UHGV-0026977_32	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_33	phrog_28775	144.8	3.60134e-43	tail length tape measure protein	tail
UniRef90	UHGV-0026977_33	UniRef90_A0A844DDD5	1148.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0026977_33	585199.HMPREF0577_0480	126.0	7.76e-27	tape measure	N/A
Pfam	UHGV-0026977_33	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0026977_33	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0026977_33	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0026977_33	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_36	phrog_885	61.8	8.4e-18	major tail protein	tail
eggNOG-mapper	UHGV-0026977_36	457396.CSBG_01054	58.5	0.000000101	Chitobiase/beta-hexosaminidase C-terminal domain	N/A
COG	UHGV-0026977_36	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-0026977_36	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026977_37	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_38	phrog_17977	51.7	0.000000000000013	N/A	unknown function
UniRef90	UHGV-0026977_38	UniRef90_A0A844DHJ8	236.0	0	Phage head closure protein	N/A
structural_annotation	UHGV-0026977_38	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_40	phrog_544	145.1	3.9937e-43	major head protein	head and packaging
UniRef90	UHGV-0026977_40	UniRef90_R0BKA1	437.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0026977_40	476272.RUMHYD_01776	327.0	0	N/A	N/A
structural_annotation	UHGV-0026977_40	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026977_41	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_42	phrog_478	124.0	5.7e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0026977_42	UniRef90_A0A373Q857	166.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0026977_42	1111121.HMPREF1247_0834	94.4	4.99e-23	N/A	N/A
PHROG	UHGV-0026977_43	phrog_5	54.8	0.0000000000000023	tail completion or Neck1 protein	connector
UniRef90	UHGV-0026977_43	UniRef90_A0A844DDB3	297.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0026977_43	1123309.AQYB01000018_gene814	94.4	1.06e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0026977_43	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0026977_43	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0026977_43	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_46	phrog_2468	77.6	5.6e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0026977_46	UniRef90_A0A844DBI4	617.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0026977_46	1504822.CCNO01000013_gene286	128.0	4.43e-30	cell adhesion	N/A
Pfam	UHGV-0026977_46	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0026977_46	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026977_46	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0026977_47	K06223	47.6	0.000000000000047	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0026977_47	phrog_56	95.3	7.3e-28	DNA methyltransferase	other
UniRef90	UHGV-0026977_47	UniRef90_UPI001C01192B	517.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0026977_47	1236504.HMPREF2132_01695	196.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0026977_47	MTase_II_00075	62.4	4.1e-29	Type II methyltransferase	RM
Pfam	UHGV-0026977_47	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
structural_annotation	UHGV-0026977_47	PF02086,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_48	phrog_64	121.8	2e-36	portal protein	head and packaging
UniRef90	UHGV-0026977_48	UniRef90_A0A6N7TNT3	489.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0026977_48	673376.F2VHW1_9CAUD	169.0	1.82169e-44	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0026977_48	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0026977_48	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0026977_49	K06909	334.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0026977_49	phrog_3717	137.1	8.80001e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0026977_49	UniRef90_A0A1Y4ES07	493.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0026977_49	665956.HMPREF1032_02957	467.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0026977_49	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
Pfam	UHGV-0026977_49	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0026977_49	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0026977_49	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0026977_49	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0026977_49	PF04466,PF16677,PF17289,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_50	phrog_36	52.7	0.0000000000000075	transcriptional regulator	transcription regulation
UniRef90	UHGV-0026977_50	UniRef90_A0A6N7TNN9	58.2	0.000000138	N/A	N/A
structural_annotation	UHGV-0026977_50	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0026977_52	K01160	61.7	2e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0026977_52	phrog_34	60.3	3.8e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026977_52	UniRef90_A0A844DBG8	241.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0026977_52	875454.BAEW01000002_gene491	136.0	9.3e-40	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0026977_52	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0026977_52	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0026977_52	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_53	phrog_3136	111.6	2.2e-33	N/A	unknown function
UniRef90	UHGV-0026977_53	UniRef90_A0A6N7TMC2	159.0	0	ASCH domain-containing protein	N/A
COG	UHGV-0026977_53	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0026977_53	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_54	phrog_757	183.9	0	DNA methyltransferase	other
UniRef90	UHGV-0026977_54	UniRef90_A0A3E2U1Y9	347.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0026977_54	748224.HMPREF9436_03069	270.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0026977_54	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0026977_54	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_56	phrog_16304	70.3	3e-20	N/A	unknown function
UniRef90	UHGV-0026977_56	UniRef90_A0A844D5V0	182.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0026977_56	1105031.HMPREF1141_0552	54.3	0.000000591	N/A	N/A
Pfam	UHGV-0026977_56	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0026977_56	PF19808,TIGR01446	N/A	N/A	N/A	N/A
KOfam	UHGV-0026977_57	K03111	134.3	1.3e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0026977_57	phrog_44	136.5	1.3e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026977_57	UniRef90_A0A844DI52	288.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0026977_57	718252.FP2_06770	196.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0026977_57	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0026977_57	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0026977_57	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0026977_57	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0026977_57	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_58	phrog_561	113.6	1.8e-33	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026977_58	UniRef90_UPI0011C8A287	141.0	2.15e-38	recombinase RecT	N/A
eggNOG-mapper	UHGV-0026977_58	563192.HMPREF0179_00147	152.0	6.23998e-42	N/A	N/A
structural_annotation	UHGV-0026977_58	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026977_60	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026977_62	PF07870,COG3461	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026977_64	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0026977_66	phrog_27197	86.5	2.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0026977_66	394503.Ccel_3068	57.4	0.0000000142	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0026977_66	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0026977_66	NF007410	N/A	N/A	N/A	N/A