UHGV-0027250 (vOTU-043796)

Viral Genome: UHGV-0027250

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0027250
vOTU ID	vOTU-043796
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_19_2149__NODE_1318_length_47891_cov_7.320743
Associated BioSample	SAMEA4766172
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.76
Jumbo phage	No

Genome content
Genome length (bp)	47,814
GC content	33.46%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	85%
Average CDS length (bps)	632.63
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0027250_8	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_9	phrog_2002	42.0	0.0000000000083	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0027250_9	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_11	phrog_6466	67.5	1.5e-19	DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027250_11	UniRef90_A0A843GQD5	110.0	7.53e-29	DNA_ligase_aden domain-containing protein	N/A
PHROG	UHGV-0027250_12	phrog_374	58.2	1.4e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0027250_12	320843.Q4ZBR0_9CAUD	52.8	0.000000801	sequence-specific DNA binding transcription factor activity	N/A
KOfam	UHGV-0027250_13	K09882	120.1	2.1e-35	cobS; cobaltochelatase CobS [EC:6.6.1.2]	N/A
PHROG	UHGV-0027250_13	phrog_249	162.6	0	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0027250_13	UniRef90_UPI001373859D	226.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0027250_13	278957.ABEA03000120_gene1205	148.0	1.43e-38	Associated with various cellular activities	N/A
Pfam	UHGV-0027250_13	PF07728	N/A	N/A	AAA domain (dynein-related subfamily)	AAA_5
Pfam	UHGV-0027250_13	PF08406	N/A	N/A	CbbQ/NirQ/NorQ C-terminal	CbbQ_C
COG	UHGV-0027250_13	COG0714	N/A	N/A	MoxR-like ATPase	N/A
structural_annotation	UHGV-0027250_13	PF07728,MF_00016,TIGR01650,COG0714	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_14	phrog_1909	132.0	3.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0027250_14	1458697.W6E8E8_9CAUD	65.1	0.00000000378	N/A	N/A
PHROG	UHGV-0027250_16	phrog_159	42.1	0.000000000009	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0027250_16	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_18	phrog_1706	53.7	0.0000000000000031	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0027250_18	1499968.TCA2_4616	55.5	0.0000049	DNA catabolic process, exonucleolytic	N/A
COG	UHGV-0027250_18	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-0027250_18	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0027250_24	K03553	180.9	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0027250_24	phrog_97	170.7	0	UvsX-like recombinase	other
UniRef90	UHGV-0027250_24	UniRef90_A0A843GSV7	389.0	0	RECA_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0027250_24	1121267.JHZL01000006_gene901	144.0	1.57e-37	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0027250_24	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0027250_24	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0027250_24	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_25	phrog_799	78.5	7.5e-23	DNA methyltransferase	other
UniRef90	UHGV-0027250_25	UniRef90_UPI00164E7D72	258.0	0	sugar-phospahte nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0027250_25	1235797.C816_04032	178.0	0	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0027250_25	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0027250_25	PF13651,MF_00607,NF000077,COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0027250_27	K02337	730.4	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0027250_27	phrog_405	691.0	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027250_27	UniRef90_A0A843GPT9	1105.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0027250_27	1158345.JNLL01000001_gene729	407.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0027250_27	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0027250_27	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0027250_27	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0027250_27	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-0027250_27	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-0027250_27	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0027250_27	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_28	phrog_236	91.7	1.5e-26	nucleotide kinase	other
UniRef90	UHGV-0027250_28	UniRef90_A0A8D9PGN7	124.0	5.78e-35	Nucelotide kinase	N/A
eggNOG-mapper	UHGV-0027250_28	1123263.AUKY01000015_gene1590	84.3	1.23e-20	N/A	N/A
Pfam	UHGV-0027250_28	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0027250_28	PF11753	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027250_29	UniRef90_A0A7X8WD06	72.4	0.000000000000141	N/A	N/A
structural_annotation	UHGV-0027250_29	PF12643,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027250_30	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-0027250_31	K02316	136.1	2.69999e-40	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0027250_31	phrog_47	138.3	6.20005e-41	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027250_31	UniRef90_A0A843GN62	343.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0027250_31	573061.Clocel_1457	88.6	1.83e-16	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-0027250_31	drt-UG29	43.4	1.8e-22	DRT	DRT
Pfam	UHGV-0027250_31	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0027250_31	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0027250_31	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0027250_31	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_35	phrog_937	63.8	2.7e-18	hemolysin	other
eggNOG-mapper	UHGV-0027250_35	742740.HMPREF9474_03172	112.0	7.83e-31	N/A	N/A
PHROG	UHGV-0027250_36	phrog_1220	216.1	0	head protein	head and packaging
UniRef90	UHGV-0027250_36	UniRef90_A0A6B3YJZ4	145.0	1.26e-37	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0027250_36	1033737.CAEV01000028_gene283	156.0	1.99965e-42	N/A	N/A
structural_annotation	UHGV-0027250_36	PF08931,PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_37	phrog_538	253.7	0	minor tail protein	tail
UniRef90	UHGV-0027250_37	UniRef90_UPI00099C280C	181.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0027250_37	768704.Desmer_4453	170.0	0	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0027250_37	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0027250_37	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_38	phrog_36410	108.3	5.3e-32	N/A	unknown function
UniRef90	UHGV-0027250_38	UniRef90_A0A7X9C3E1	347.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0027250_38	536232.CLM_2922	142.0	1.19e-37	Phage tail protein	N/A
Pfam	UHGV-0027250_38	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0027250_38	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0027250_38	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_39	phrog_1533	476.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0027250_39	UniRef90_A0A351TJS6	366.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0027250_39	1410670.JHXF01000015_gene2302	357.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0027250_39	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0027250_39	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0027250_39	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0027250_39	PF10145,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_40	phrog_6280	113.8	6e-34	N/A	unknown function
UniRef90	UHGV-0027250_40	UniRef90_A0A8J6PH67	112.0	3.41e-28	Esterase	N/A
eggNOG-mapper	UHGV-0027250_40	445335.CBN_3078	102.0	4.24e-25	N/A	N/A
PHROG	UHGV-0027250_41	phrog_6686	137.9	5.70006e-41	tail tube protein	tail
UniRef90	UHGV-0027250_41	UniRef90_A0A1C6KI12	167.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0027250_41	871584.D9ZNE2_9CAUD	118.0	1.02e-30	N/A	N/A
structural_annotation	UHGV-0027250_41	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_42	phrog_7585	65.9	6.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0027250_42	1196322.A370_04060	63.5	0.0000000000557	N/A	N/A
eggNOG-mapper	UHGV-0027250_43	632292.Calhy_0769	79.3	1.34e-17	Phage virion morphogenesis	N/A
COG	UHGV-0027250_43	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027250_43	PF04883,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027250_44	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_45	phrog_4020	65.1	9.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0027250_45	748727.CLJU_c31290	49.3	0.00000149	N/A	N/A
structural_annotation	UHGV-0027250_46	PF08593	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_47	phrog_29	259.7	0	major head protein	head and packaging
UniRef90	UHGV-0027250_47	UniRef90_UPI00082C04A5	378.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0027250_47	1158612.I580_01912	322.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0027250_47	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0027250_47	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027250_48	1158612.I580_01911	55.5	0.0000000424	N/A	N/A
structural_annotation	UHGV-0027250_48	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_49	phrog_2303	82.6	5.3e-24	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0027250_49	997296.PB1_16214	65.5	0.000000000476	N/A	N/A
structural_annotation	UHGV-0027250_49	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_50	phrog_1315	43.0	0.0000000000054	N/A	unknown function
structural_annotation	UHGV-0027250_51	PF06133	N/A	N/A	N/A	N/A
KOfam	UHGV-0027250_53	K11044	65.3	9.5e-19	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-0027250_53	phrog_1657	160.4	0	head morphogenesis	head and packaging
UniRef90	UHGV-0027250_53	UniRef90_A0A349YJR5	667.0	0	ADPrib_exo_Tox domain-containing protein	N/A
eggNOG-mapper	UHGV-0027250_53	1567015.A0A0A7RUI1_9VIRU	136.0	9.69e-31	Phage Mu protein F like protein	N/A
Pfam	UHGV-0027250_53	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
structural_annotation	UHGV-0027250_53	PF03496,NF040688	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_54	phrog_64	107.0	1.3e-31	portal protein	head and packaging
UniRef90	UHGV-0027250_54	UniRef90_A0A843GSM3	402.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0027250_54	1121342.AUCO01000012_gene1700	144.0	1e-34	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0027250_54	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0027250_54	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0027250_55	K01448	128.2	7.3e-38	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0027250_55	phrog_435	196.0	0	endolysin	lysis
UniRef90	UHGV-0027250_55	UniRef90_B0G4K0	251.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0027250_55	411461.DORFOR_01187	251.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0027250_55	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0027250_55	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0027250_55	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0027250_55	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_56	phrog_355	49.8	0.000000000000045	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027250_56	UniRef90_A0A385Q0Q2	102.0	1.58e-26	N/A	N/A
eggNOG-mapper	UHGV-0027250_56	1256908.HMPREF0373_00479	97.4	3.56e-25	N/A	N/A
Pfam	UHGV-0027250_56	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0027250_56	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_57	phrog_443	56.8	5.8e-16	holin	lysis
UniRef90	UHGV-0027250_57	UniRef90_UPI000C75746C	102.0	3.49e-27	holin	N/A
eggNOG-mapper	UHGV-0027250_57	626523.GCWU000342_01012	90.5	6.86e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0027250_57	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0027250_57	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0027250_60	K03646	46.7	0.0000000000006	tolA; colicin import membrane protein	N/A
PHROG	UHGV-0027250_60	phrog_23208	53.7	1.6e-23	virion structural protein	head and packaging
KOfam	UHGV-0027250_61	K06909	287.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0027250_61	phrog_3717	130.0	6.29996e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0027250_61	UniRef90_A0A349YI29	656.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0027250_61	536232.CLM_2529	463.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0027250_61	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0027250_61	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0027250_61	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0027250_61	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0027250_61	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0027250_62	phrog_309	115.5	7.7e-35	terminase small subunit	head and packaging
UniRef90	UHGV-0027250_62	UniRef90_A0A843GSL4	131.0	5.85e-35	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0027250_62	742733.HMPREF9469_01828	100.0	1.92e-24	transposase activity	N/A
Pfam	UHGV-0027250_62	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0027250_62	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0027250_63	PF21485,MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A