UHGV-0027307 (vOTU-009077)

Viral Genome: UHGV-0027307

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0027307
vOTU ID	vOTU-009077
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_N_19_2137__NODE_1541_length_34771_cov_8.148181
Associated BioSample	SAMEA4766160
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.981
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.36
Jumbo phage	No

Genome content
Genome length (bp)	34,771
GC content	45.47%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	91%
Average CDS length (bps)	587.89
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0027307_2	K14059	128.7	6.8e-38	int; integrase	N/A
PHROG	UHGV-0027307_2	phrog_1	156.6	0	integrase	integration and excision
UniRef90	UHGV-0027307_2	UniRef90_UPI001C0C539C	622.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0027307_2	1235792.C808_01553	330.0	0	Phage integrase family	N/A
Pfam	UHGV-0027307_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0027307_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0027307_2	PF00589,MF_01808,NF002331,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027307_3	UniRef90_A0A6J7P3L5	52.8	0.0000000414	Unannotated protein	N/A
eggNOG-mapper	UHGV-0027307_3	483216.BACEGG_01163	51.2	0.0000000345	N/A	N/A
KOfam	UHGV-0027307_4	K22300	64.4	2.3e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0027307_4	phrog_8	61.6	1.7e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0027307_4	UniRef90_A0A0M6WJ36	125.0	4.41e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0027307_4	1507.HMPREF0262_03473	90.5	6.36e-22	sequence-specific DNA binding	N/A
Pfam	UHGV-0027307_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0027307_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0027307_4	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027307_5	UniRef90_A0A3A9A5Y0	89.4	1.03e-21	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0027307_5	1385512.N784_13400	50.4	0.000000401	N/A	N/A
Pfam	UHGV-0027307_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0027307_5	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_10	phrog_6058	69.3	3.2e-20	N/A	unknown function
UniRef90	UHGV-0027307_10	UniRef90_A0A0U9H7T0	74.7	3.13e-16	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-0027307_10	411468.CLOSCI_01465	86.3	1.56e-21	N/A	N/A
structural_annotation	UHGV-0027307_10	PF12728,TIGR01764	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_12	phrog_1384	102.3	4.5e-30	Mom-like DNA modification protein	other
UniRef90	UHGV-0027307_12	UniRef90_A0A0K2CZB3	176.0	0	Acetyltransferase	N/A
eggNOG-mapper	UHGV-0027307_12	1121468.AUBR01000007_gene285	93.2	1.42e-21	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0027307_12	PF11039,MF_02210,NF040503,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_13	phrog_20014	94.2	6.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0027307_13	411470.RUMGNA_02042	89.0	8.39e-22	N/A	N/A
KOfam	UHGV-0027307_15	K03111	57.0	4.3e-16	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0027307_15	phrog_26861	101.1	7.8e-30	N/A	unknown function
UniRef90	UHGV-0027307_15	UniRef90_A0A174WND2	190.0	0	Helix-destabilizing protein	N/A
eggNOG-mapper	UHGV-0027307_15	1280698.AUJS01000006_gene2843	98.6	1.43e-22	Single-strand binding protein family	N/A
Pfam	UHGV-0027307_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0027307_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0027307_15	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_17	phrog_24386	113.4	1.8e-33	N/A	unknown function
eggNOG-mapper	UHGV-0027307_17	622312.ROSEINA2194_03445	124.0	1.08e-34	phosphatase activity	N/A
COG	UHGV-0027307_17	COG0561	N/A	N/A	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	N/A
PHROG	UHGV-0027307_18	phrog_24368	64.1	2.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0027307_18	411902.CLOBOL_03886	63.9	0.0000000000316	N/A	N/A
KOfam	UHGV-0027307_19	K00571	112.0	6.7e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0027307_19	phrog_23224	102.4	1.2e-32	DNA methyltransferase	other
UniRef90	UHGV-0027307_19	UniRef90_A0A3A9F3H1	398.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0027307_19	97139.C824_00741	285.0	0	DNA methylase	N/A
PADLOC	UHGV-0027307_19	MTase_II_00172	117.5	1.5e-34	Type II methyltransferase	RM
Pfam	UHGV-0027307_19	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0027307_19	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0027307_19	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_21	phrog_3584	176.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0027307_21	1232452.BAIB02000007_gene1647	327.0	0	N/A	N/A
structural_annotation	UHGV-0027307_21	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_22	phrog_799	85.1	7.8e-25	DNA methyltransferase	other
UniRef90	UHGV-0027307_22	UniRef90_UPI0008488A8B	302.0	0	tRNA (adenine-N(6)-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0027307_22	641112.ACOK01000119_gene1514	223.0	0	N/A	N/A
structural_annotation	UHGV-0027307_22	PF13651,MF_02100,TIGR01712,COG0030	N/A	N/A	N/A	N/A
KOfam	UHGV-0027307_26	K03496	94.0	2e-27	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0027307_26	phrog_164	77.7	1.7e-22	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027307_26	UniRef90_UPI001C0C6936	196.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0027307_26	642492.Clole_0729	143.0	2.65e-40	AAA domain	N/A
Pfam	UHGV-0027307_26	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0027307_26	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
KOfam	UHGV-0027307_27	K03497	51.8	0.000000000000015	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0027307_27	phrog_15982	141.2	6.89999e-42	N/A	unknown function
UniRef90	UHGV-0027307_27	UniRef90_UPI001D07CD5B	416.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0027307_27	411902.CLOBOL_03889	280.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0027307_27	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0027307_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0027307_27	PF02195,PF07506,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_29	phrog_25385	48.3	0.00000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0027307_29	411468.CLOSCI_00565	62.8	0.0000000000435	N/A	N/A
KOfam	UHGV-0027307_31	K03111	116.4	4e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0027307_31	phrog_44	116.2	2.9e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027307_31	UniRef90_A0A3A9F3L6	216.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0027307_31	1280682.AUKA01000019_gene1126	174.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0027307_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0027307_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0027307_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0027307_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0027307_31	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_32	phrog_5110	112.9	1.1e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0027307_32	UniRef90_UPI001D06BD2A	186.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0027307_32	349161.Dred_2608	121.0	2.92e-34	N/A	N/A
Pfam	UHGV-0027307_32	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0027307_32	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_33	phrog_9	289.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0027307_33	UniRef90_UPI001D05EE8F	903.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0027307_33	1211817.CCAT010000053_gene2129	548.0	0	Phage Terminase	N/A
Pfam	UHGV-0027307_33	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0027307_33	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0027307_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0027307_33	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_34	phrog_12	110.7	9e-33	portal protein	head and packaging
UniRef90	UHGV-0027307_34	UniRef90_UPI001C0B5E3A	617.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0027307_34	1211817.CCAT010000053_gene2130	308.0	0	Phage portal protein	N/A
Pfam	UHGV-0027307_34	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0027307_34	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0027307_34	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0027307_34	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0027307_35	K01358	128.6	6.5e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0027307_35	phrog_94	212.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0027307_35	UniRef90_A0A3A9EY08	356.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0027307_35	1235792.C808_00085	259.0	0	Clp protease	N/A
Pfam	UHGV-0027307_35	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0027307_35	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0027307_35	PF00574,MF_00444,NF009203,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_36	phrog_10	122.2	6.3e-36	major head protein	head and packaging
UniRef90	UHGV-0027307_36	UniRef90_UPI001D075B31	676.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0027307_36	349161.Dred_2604	378.0	0	Phage capsid family	N/A
Pfam	UHGV-0027307_36	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0027307_36	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0027307_36	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0027307_36	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_37	phrog_749	57.2	2.3e-16	N/A	unknown function
UniRef90	UHGV-0027307_37	UniRef90_UPI0007B3B3B7	51.6	0.00000336	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0027307_37	349161.Dred_2603	53.5	0.000000101	N/A	N/A
PHROG	UHGV-0027307_38	phrog_19734	71.7	9.9e-21	N/A	unknown function
UniRef90	UHGV-0027307_38	UniRef90_UPI001EE7A060	114.0	8.24e-31	phage head closure protein	N/A
eggNOG-mapper	UHGV-0027307_38	610130.Closa_0746	60.8	0.000000000196	N/A	N/A
structural_annotation	UHGV-0027307_38	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027307_39	1415774.U728_1249	55.1	0.0000000805	N/A	N/A
structural_annotation	UHGV-0027307_39	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_41	phrog_2175	73.5	1.8e-21	protein with Ig domain	other
UniRef90	UHGV-0027307_41	UniRef90_A0A401UUY1	174.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0027307_41	755731.Clo1100_0552	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0027307_42	411468.CLOSCI_00542	48.9	0.00000713	N/A	N/A
structural_annotation	UHGV-0027307_42	PF06222	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_43	phrog_58	255.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0027307_43	UniRef90_A0A174WW30	512.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0027307_43	411470.RUMGNA_02076	277.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0027307_43	PF04513	N/A	N/A	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
COG	UHGV-0027307_43	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0027307_44	phrog_33	61.4	2.1e-17	distal tail protein Dit	tail
UniRef90	UHGV-0027307_44	UniRef90_A0A174WNI0	500.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0027307_44	411468.CLOSCI_00539	227.0	0	COG NOG18823 non supervised orthologous group	N/A
Pfam	UHGV-0027307_44	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0027307_44	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0027307_44	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_45	phrog_538	282.7	0	minor tail protein	tail
UniRef90	UHGV-0027307_45	UniRef90_UPI001D05F61F	383.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0027307_45	411468.CLOSCI_00538	309.0	0	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0027307_45	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0027307_45	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_46	phrog_1220	221.8	0	head protein	head and packaging
UniRef90	UHGV-0027307_46	UniRef90_R6SMG3	140.0	2.3e-35	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0027307_46	411468.CLOSCI_00537	177.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0027307_46	PF13620,PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0027307_47	phrog_5302	212.8	0	tail protein	tail
eggNOG-mapper	UHGV-0027307_47	742741.HMPREF9475_00438	266.0	0	N/A	N/A
structural_annotation	UHGV-0027307_47	PF16323,COG3979	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027307_48	428125.CLOLEP_01428	49.7	0.00000499	N/A	N/A
NCBIFam	UHGV-0027307_49	NF040910.1	N/A	N/A	CD1375 family protein	N/A
PHROG	UHGV-0027307_50	phrog_199	64.0	1.7e-18	holin	lysis
UniRef90	UHGV-0027307_50	UniRef90_UPI001D08D7FC	225.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0027307_50	1121333.JMLH01000047_gene1005	159.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0027307_50	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0027307_50	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0027307_50	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027307_51	397290.C810_00439	53.5	0.00000000376	N/A	N/A
KOfam	UHGV-0027307_52	K01447	135.7	3.8e-40	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0027307_52	phrog_1794	151.3	0	amidase	lysis
UniRef90	UHGV-0027307_52	UniRef90_UPI001C0DDDE3	714.0	0	peptidoglycan recognition protein family protein	N/A
eggNOG-mapper	UHGV-0027307_52	665950.HMPREF1025_01587	423.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0027307_52	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0027307_52	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0027307_52	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0027307_52	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0027307_52	PF01510,PF18013,MF_04111,NF008758,COG5632,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-0027307_54	K22300	58.6	1.2e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0027307_54	phrog_8	64.2	1.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0027307_54	UniRef90_D4MZ82	390.0	0	Predicted transcriptional regulators	N/A
eggNOG-mapper	UHGV-0027307_54	1280698.AUJS01000036_gene57	398.0	0	N/A	N/A
PADLOC	UHGV-0027307_54	retron_type_VI_hth_cluster2_1	41.5	0.000000000014	N/A	Retron
Pfam	UHGV-0027307_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0027307_54	PF12674	N/A	N/A	Putative zinc ribbon domain	Zn_ribbon_2
COG	UHGV-0027307_54	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A