UHGV-0027664 (vOTU-043838)

Viral Genome: UHGV-0027664

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0027664
vOTU ID	vOTU-043838
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_9_1723__NODE_1508_length_43096_cov_14.327251
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9741
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.2
Jumbo phage	No

Genome content
Genome length (bp)	43,019
GC content	42.66%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	91%
Average CDS length (bps)	568.39
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0027664_2	phrog_7370	72.4	5e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027664_2	UniRef90_A0A498CPV0	135.0	3.74e-39	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0027664_2	358681.BBR47_35660	51.6	0.000000702	HNH endonuclease	N/A
Pfam	UHGV-0027664_2	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0027664_2	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0027664_3	phrog_674	136.2	9.6003e-42	N/A	unknown function
UniRef90	UHGV-0027664_3	UniRef90_A0A6N7XHF2	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0027664_3	1095750.HMPREF9970_1676	153.0	1.10983e-42	N/A	N/A
Pfam	UHGV-0027664_3	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0027664_3	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_4	phrog_155	152.8	1.4013e-45	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027664_4	UniRef90_UPI001CF85C41	209.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0027664_4	201846.Q6JM07_9CAUD	174.0	0	ERF superfamily	N/A
Pfam	UHGV-0027664_4	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0027664_4	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_7	phrog_9804	116.1	2.8e-34	N/A	unknown function
UniRef90	UHGV-0027664_7	UniRef90_A0A1C5T9U7	161.0	0	Loader and inhibitor of phage G40P	N/A
eggNOG-mapper	UHGV-0027664_7	585394.RHOM_14005	111.0	2.13e-28	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-0027664_7	cluster_137185	109.0	1.27e-32	NA	N/A
Pfam	UHGV-0027664_7	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0027664_7	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_8	phrog_8489	269.7	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027664_8	UniRef90_A0A174X4J3	251.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-0027664_8	1139219.I569_01402	232.0	0	DnaD domain protein	N/A
COG	UHGV-0027664_8	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0027664_8	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0027664_10	K08309	48.7	0.000000000000074	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-0027664_10	phrog_19349	151.2	4.2039e-45	N/A	unknown function
UniRef90	UHGV-0027664_10	UniRef90_UPI000DE563D6	139.0	2.59e-38	transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0027664_10	742740.HMPREF9474_02375	125.0	2.65e-33	lytic transglycosylase activity	N/A
Pfam	UHGV-0027664_10	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0027664_10	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0027664_10	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_11	phrog_989	80.9	7.6e-24	N/A	unknown function
UniRef90	UHGV-0027664_11	UniRef90_Q8SBM7	73.9	2.83e-16	Gp27 protein	N/A
eggNOG-mapper	UHGV-0027664_11	1540257.JQMW01000013_gene708	70.5	0.00000000000000112	N/A	N/A
PHROG	UHGV-0027664_12	phrog_8	47.1	0.00000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-0027664_12	UniRef90_T5JYM7	51.2	0.00000138	Cro/Cl family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0027664_12	997884.HMPREF1068_03266	47.4	0.00000477	N/A	N/A
Pfam	UHGV-0027664_12	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0027664_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0027664_12	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_15	phrog_8	48.7	0.00000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0027664_15	UniRef90_UPI000BA57F70	74.7	0.0000000000000139	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0027664_15	1285586.H131_11663	58.9	0.00000000184	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0027664_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
COG	UHGV-0027664_17	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-0027664_18	K14059	192.6	0	int; integrase	N/A
PHROG	UHGV-0027664_18	phrog_1	186.3	0	integrase	integration and excision
UniRef90	UHGV-0027664_18	UniRef90_A0A858BPV1	256.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0027664_18	97139.C824_03191	226.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0027664_18	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0027664_18	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0027664_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0027664_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0027664_18	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027664_19	1408437.JNJN01000043_gene801	59.3	0.00000001	N/A	N/A
structural_annotation	UHGV-0027664_20	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027664_21	397290.C810_01328	53.1	0.00000941	N/A	N/A
PHROG	UHGV-0027664_23	phrog_21718	55.0	0.0000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0027664_23	476272.RUMHYD_01768	65.9	0.00000000000511	N/A	N/A
structural_annotation	UHGV-0027664_24	PF13404,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0027664_25	K01448	111.6	8.7e-33	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0027664_25	phrog_435	166.4	0	endolysin	lysis
UniRef90	UHGV-0027664_25	UniRef90_B0MAM2	185.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0027664_25	411490.ANACAC_00597	185.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-0027664_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0027664_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0027664_25	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_26	phrog_443	54.0	0.0000000000000048	holin	lysis
UniRef90	UHGV-0027664_26	UniRef90_A0A1I1Y2T2	89.4	3.45e-22	Phage r1t holin	N/A
eggNOG-mapper	UHGV-0027664_26	1469948.JPNB01000002_gene3855	86.7	6.77e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0027664_26	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0027664_26	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_27	phrog_4105	80.1	2e-23	N/A	unknown function
UniRef90	UHGV-0027664_27	UniRef90_A0A8D9UHA9	67.8	0.00000000000153	Holin protein	N/A
eggNOG-mapper	UHGV-0027664_27	428125.CLOLEP_01431	76.6	1.15e-16	N/A	N/A
eggNOG-mapper	UHGV-0027664_28	1131462.DCF50_p1798	174.0	5.12006e-41	N/A	N/A
NCBIFam	UHGV-0027664_34	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0027664_34	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-0027664_36	K00986	124.6	1e-36	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0027664_36	phrog_1423	218.3	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027664_36	UniRef90_R6GXU6	327.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0027664_36	1410650.JHWL01000003_gene2820	261.0	0	Reverse transcriptase	N/A
PADLOC	UHGV-0027664_36	icity0040	91.7	1.3e-26	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0027664_36	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0027664_36	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0027664_36	PF00078,TIGR04416,COG3344	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027664_37	PF05635,NF008911	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_38	phrog_37900	52.5	0.0000000000000019	N/A	unknown function
UniRef90	UHGV-0027664_38	UniRef90_UPI001C0D2359	117.0	2.38e-26	N/A	N/A
eggNOG-mapper	UHGV-0027664_38	693746.OBV_22720	167.0	2.8026e-44	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-0027664_38	PF07523	N/A	N/A	Bacterial Ig-like domain (group 3)	Big_3
Pfam	UHGV-0027664_38	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0027664_38	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0027664_38	PF19789,PF14686,TIGR04183,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_39	phrog_21765	45.2	0.0000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0027664_39	552398.HMPREF0866_01593	79.3	0.000000000000386	tail collar domain protein	N/A
COG	UHGV-0027664_39	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0027664_40	phrog_3287	96.6	1.9e-28	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0027664_40	1232449.BAHV02000016_gene1816	278.0	0	N/A	N/A
structural_annotation	UHGV-0027664_40	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027664_42	PF07100,COG4288	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_43	phrog_267	100.0	2.5e-29	major head protein	head and packaging
UniRef90	UHGV-0027664_43	UniRef90_A0A4R3KBP0	152.0	3.78e-41	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0027664_43	665956.HMPREF1032_03906	250.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-0027664_43	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_45	phrog_156	101.6	4.5e-31	portal protein	head and packaging
eggNOG-mapper	UHGV-0027664_45	1232449.BAHV02000016_gene1822	392.0	0	N/A	N/A
structural_annotation	UHGV-0027664_45	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_47	phrog_38	350.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0027664_47	UniRef90_A0A845QMQ7	593.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0027664_47	755731.Clo1100_2438	437.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0027664_47	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0027664_47	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0027664_47	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0027664_47	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0027664_47	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027664_48	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_49	phrog_15863	140.7	6.50062e-42	N/A	unknown function
UniRef90	UHGV-0027664_49	UniRef90_A0A1Y3R3M0	160.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0027664_49	693746.OBV_01780	148.0	3.36312e-43	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0027664_49	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0027664_50	PF17917	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027664_52	UniRef90_W1I7V7	50.1	0.00000331	Uncultured bacterium plasmid pRGF00143	N/A
PHROG	UHGV-0027664_54	phrog_36	51.3	0.000000000000021	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0027664_54	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_55	phrog_1770	112.7	2.8e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027664_55	UniRef90_A0A7V8QMV9	91.7	1.17e-20	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0027664_55	1144932.ATTF01000015_gene1210	84.0	2.12e-18	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-0027664_55	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-0027664_55	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_56	phrog_10714	47.3	0.00000000000033	N/A	unknown function
Pfam	UHGV-0027664_57	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0027664_61	phrog_419	73.7	3.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0027664_61	476272.RUMHYD_03324	99.4	4.28e-26	N/A	N/A
structural_annotation	UHGV-0027664_61	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_62	phrog_22292	41.4	0.000000000021	N/A	unknown function
KOfam	UHGV-0027664_66	K03111	137.8	1.2e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0027664_66	phrog_44	126.9	1.6e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027664_66	UniRef90_A0A645FRU2	169.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0027664_66	1321814.HMPREF9089_01469	160.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0027664_66	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0027664_66	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0027664_66	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0027664_66	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0027664_66	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_67	phrog_25385	56.3	5.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0027664_67	718252.FP2_16450	56.2	0.0000000128	N/A	N/A
PHROG	UHGV-0027664_68	phrog_72	68.3	8.9e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027664_68	UniRef90_A0A8D9PDS2	123.0	1.56e-32	NinB protein	N/A
eggNOG-mapper	UHGV-0027664_68	1507.HMPREF0262_00432	115.0	3.47e-30	N/A	N/A
structural_annotation	UHGV-0027664_68	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0027664_69	phrog_27197	52.5	0.0000000000000096	N/A	unknown function
eggNOG-mapper	UHGV-0027664_69	886882.PPSC2_p0363	77.8	3.07e-16	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0027664_69	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A