UHGV-0027848 (vOTU-102400)

Viral Genome: UHGV-0027848

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0027848
vOTU ID	vOTU-102400
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_J_6_2308__NODE_2811_length_35193_cov_36.951447
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.41 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.94
Jumbo phage	No

Genome content
Genome length (bp)	35,193
GC content	53.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	89%
Average CDS length (bps)	475.14
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0027848_2	phrog_478	126.3	1.4e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0027848_2	UniRef90_A0A373Q857	166.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0027848_2	1111121.HMPREF1247_0834	97.1	3.94e-24	N/A	N/A
PHROG	UHGV-0027848_3	phrog_5	53.7	0.0000000000000057	tail completion or Neck1 protein	connector
UniRef90	UHGV-0027848_3	UniRef90_A0A6N7TNP6	288.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0027848_3	929506.CbC4_1219	88.6	2.38e-20	N/A	N/A
Pfam	UHGV-0027848_3	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0027848_3	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_5	phrog_2468	81.5	8.5e-24	head morphogenesis	head and packaging
UniRef90	UHGV-0027848_5	UniRef90_A0A6N7TLR7	649.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0027848_5	1504822.CCNO01000013_gene286	117.0	4.33e-26	cell adhesion	N/A
Pfam	UHGV-0027848_5	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0027848_5	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027848_5	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_6	phrog_64	123.9	5.9e-37	portal protein	head and packaging
UniRef90	UHGV-0027848_6	UniRef90_A0A6N7TNT3	892.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0027848_6	642492.Clole_2764	80.9	0.000000000000172	phage portal protein, SPP1	N/A
Pfam	UHGV-0027848_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0027848_6	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0027848_7	K06909	139.5	3.39997e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0027848_7	phrog_10250	170.2	0	N/A	unknown function
UniRef90	UHGV-0027848_7	UniRef90_A0A844D8I4	811.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0027848_7	411490.ANACAC_00783	491.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0027848_7	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0027848_7	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0027848_7	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0027848_7	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0027848_7	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_8	phrog_606	87.0	2.2e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0027848_8	UniRef90_UPI001C02EFD1	235.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0027848_8	397290.C810_05185	162.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0027848_8	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0027848_8	PF16677	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027848_9	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0027848_11	K01160	59.9	8.7e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0027848_11	phrog_34	61.2	2.2e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027848_11	UniRef90_A0A6N7TND6	217.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0027848_11	525919.Apre_0813	128.0	1.54e-36	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0027848_11	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0027848_11	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0027848_11	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_12	phrog_3136	128.8	1.9e-38	N/A	unknown function
UniRef90	UHGV-0027848_12	UniRef90_A0A6N7TMC2	141.0	1.89e-39	ASCH domain-containing protein	N/A
COG	UHGV-0027848_12	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0027848_12	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_15	phrog_757	196.4	0	DNA methyltransferase	other
UniRef90	UHGV-0027848_15	UniRef90_A0A374BFJ7	296.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0027848_15	748224.HMPREF9436_03069	278.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0027848_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0027848_15	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027848_20	MF_00273,COG2157	N/A	N/A	N/A	N/A
Pfam	UHGV-0027848_23	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0027848_23	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0027848_24	K02086	59.7	2.9e-17	dnaD; DNA replication protein	N/A
PHROG	UHGV-0027848_24	phrog_186	73.4	3.2e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027848_24	UniRef90_A0A3E2UDK7	270.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0027848_24	718252.FP2_01000	100.0	2.2e-22	N/A	N/A
Pfam	UHGV-0027848_24	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0027848_24	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0027848_24	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0027848_24	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0027848_24	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0027848_25	K03111	40.3	0.00000000007	ssb; single-strand DNA-binding protein	N/A
Pfam	UHGV-0027848_25	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0027848_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0027848_25	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_26	phrog_2760	181.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027848_26	UniRef90_A0A3E2UDI4	377.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0027848_26	1235794.C811_01355	152.0	1.40999e-41	RecT family	N/A
Pfam	UHGV-0027848_26	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0027848_26	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0027848_26	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0027848_26	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_27	phrog_674	147.9	7.84727e-44	N/A	unknown function
UniRef90	UHGV-0027848_27	UniRef90_A0A3E2UDL3	372.0	0	N/A	N/A
eggNOG-mapper	UHGV-0027848_27	742722.HMPREF9463_00201	84.7	7.17e-16	N/A	N/A
Pfam	UHGV-0027848_27	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0027848_27	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027848_29	PF12270,NF040944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027848_30	UniRef90_UPI00130EBC54	144.0	1.42932e-43	N/A	N/A
eggNOG-mapper	UHGV-0027848_30	445972.ANACOL_01800	49.7	0.000000686	N/A	N/A
COG	UHGV-0027848_30	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0027848_30	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0027848_35	K07741	139.4	5.99994e-41	antB; anti-repressor protein	N/A
PHROG	UHGV-0027848_35	phrog_63	116.6	2.7e-34	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0027848_35	UniRef90_A0A6N7TLD1	303.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0027848_35	1230342.CTM_16892	209.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0027848_35	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0027848_35	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0027848_35	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0027848_35	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_37	phrog_32852	47.1	0.00000000000033	N/A	unknown function
KOfam	UHGV-0027848_40	K18830	61.3	2e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0027848_40	phrog_2967	47.7	0.00000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0027848_40	UniRef90_A0A844DFR0	234.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0027848_40	748224.HMPREF9436_01444	176.0	0	N/A	N/A
PADLOC	UHGV-0027848_40	retron_type_VI_hth_cluster2_1	40.3	0.000000000044	N/A	Retron
Pfam	UHGV-0027848_40	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0027848_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0027848_40	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_43	phrog_888	67.3	1.9e-35	N/A	unknown function
UniRef90	UHGV-0027848_43	UniRef90_A0A6N7TMA2	440.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0027848_43	1415774.U728_165	87.8	5.88e-18	Short C-terminal domain	N/A
Pfam	UHGV-0027848_43	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-0027848_43	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0027848_43	PF15947,PF14471	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027848_46	UniRef90_A0A6N7TLT0	385.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0027848_46	266265.Bxe_A3948	55.1	0.0000000915	Helix-turn-helix domain	N/A
Pfam	UHGV-0027848_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0027848_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0027848_46	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0027848_47	K14059	123.5	3.1e-36	int; integrase	N/A
PHROG	UHGV-0027848_47	phrog_1	108.0	1.6e-31	integrase	integration and excision
UniRef90	UHGV-0027848_47	UniRef90_E2ZNV1	738.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0027848_47	748224.HMPREF9436_03382	738.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0027848_47	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0027848_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0027848_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0027848_47	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027848_48	748224.HMPREF9436_01413	73.9	4.75e-17	SPP1 phage holin	N/A
Pfam	UHGV-0027848_48	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
structural_annotation	UHGV-0027848_50	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_51	phrog_20016	208.2	0	N/A	unknown function
UniRef90	UHGV-0027848_51	UniRef90_A0A285PT46	218.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0027848_51	1226322.HMPREF1545_00077	185.0	0	N/A	N/A
structural_annotation	UHGV-0027848_51	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_53	phrog_16490	195.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0027848_53	397290.C810_01328	125.0	2.89e-31	N/A	N/A
PHROG	UHGV-0027848_54	phrog_22984	69.0	6.9e-20	N/A	unknown function
PHROG	UHGV-0027848_55	phrog_21718	86.0	5.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0027848_55	397290.C810_05210	81.6	2.07e-17	N/A	N/A
PHROG	UHGV-0027848_56	phrog_3754	96.0	4.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0027848_56	1235790.C805_00054	112.0	1.6e-30	N/A	N/A
eggNOG-mapper	UHGV-0027848_58	1235798.C817_04600	62.8	0.0000000000267	N/A	N/A
structural_annotation	UHGV-0027848_58	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_59	phrog_374	49.5	2.7e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027848_59	UniRef90_UPI001C0BF339	95.5	1.27e-19	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0027848_59	887929.HMP0721_2409	71.6	0.00000000000686	N/A	N/A
structural_annotation	UHGV-0027848_59	PF18337,PF00847	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_61	phrog_15303	73.3	3.3e-21	N/A	unknown function
KOfam	UHGV-0027848_63	K07273	167.2	0	acm; lysozyme	N/A
PHROG	UHGV-0027848_63	phrog_291	116.4	2.9e-34	endolysin	lysis
UniRef90	UHGV-0027848_63	UniRef90_A0A564U0D3	362.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0027848_63	718252.FP2_04890	229.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0027848_63	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0027848_63	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0027848_63	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0027848_64	K03651	57.7	1.2e-16	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-0027848_64	phrog_7158	98.0	1.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0027848_64	565653.EGBG_01980	90.9	8.25e-16	Phage minor structural protein	N/A
Pfam	UHGV-0027848_64	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0027848_64	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
structural_annotation	UHGV-0027848_64	PF14582,MF_00905,NF008359,COG2129	N/A	N/A	N/A	N/A
PHROG	UHGV-0027848_65	phrog_18725	75.8	6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0027848_65	1226322.HMPREF1545_00062	93.6	5.2e-22	N/A	N/A
Pfam	UHGV-0027848_66	PF19789	N/A	N/A	N/A	DUF6273