UHGV-0027862 (vOTU-083072)

Viral Genome: UHGV-0027862

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0027862
vOTU ID	vOTU-083072
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_H_11_1999__NODE_780_length_42140_cov_16.196515
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9793
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.48
Jumbo phage	No

Genome content
Genome length (bp)	42,140
GC content	46.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	95%
Average CDS length (bps)	781.47
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0027862_4	UniRef90_A0A316S6W0	91.3	1.62e-22	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-0027862_4	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0027862_4	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0027862_4	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027862_9	UniRef90_A0A7M1RS47	89.7	5.87e-20	RNA polymerase sigma factor/ubiquitin-like protein	N/A
KOfam	UHGV-0027862_10	K06400	380.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0027862_10	phrog_95	367.9	0	integrase	integration and excision
UniRef90	UHGV-0027862_10	UniRef90_E8LBZ4	426.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0027862_10	626939.HMPREF9443_00357	426.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-0027862_10	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0027862_10	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0027862_10	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0027862_10	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0027862_10	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0027862_11	K07448	48.4	0.00000000000011	mrr; restriction system protein	N/A
UniRef90	UHGV-0027862_11	UniRef90_A0A644WFW5	298.0	0	Mrr_cat domain-containing protein	N/A
eggNOG-mapper	UHGV-0027862_11	50960.LS81_07910	68.6	0.0000000000784	Restriction endonuclease	N/A
Pfam	UHGV-0027862_11	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
structural_annotation	UHGV-0027862_11	PF04471,MF_00722,NF002876,COG1787	N/A	N/A	N/A	N/A
KOfam	UHGV-0027862_12	K18830	58.6	1.6e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0027862_12	phrog_8	57.6	3.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0027862_12	UniRef90_B0N8N2	70.1	0.000000000000252	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0027862_12	445974.CLORAM_02966	70.1	0.0000000000000423	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0027862_12	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0027862_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0027862_12	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0027862_13	K22300	62.1	1.5e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0027862_13	phrog_4	57.1	5.1e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-0027862_13	UniRef90_R6X1Y8	129.0	4.03e-36	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0027862_13	411470.RUMGNA_02181	84.3	3.21e-19	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0027862_13	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0027862_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0027862_13	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0027862_21	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-0027862_21	PF12957	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027862_22	MF_02014,NF010723	N/A	N/A	N/A	N/A
KOfam	UHGV-0027862_23	K03497	157.3	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0027862_23	phrog_6218	247.7	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027862_23	UniRef90_A0A1Y4WCX6	286.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0027862_23	1408437.JNJN01000030_gene1074	225.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0027862_23	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0027862_23	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0027862_23	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0027862_23	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0027862_26	phrog_1672	51.7	0.000000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0027862_26	1443122.Z958_05925	51.6	0.00000645	N/A	N/A
PHROG	UHGV-0027862_28	phrog_3584	205.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0027862_28	642492.Clole_0725	159.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0027862_28	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0027862_30	K07474	89.8	6.8e-26	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0027862_30	phrog_51	80.4	7.7e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0027862_30	UniRef90_A0A8B2QP55	95.5	1.99e-22	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0027862_30	585503.HMPREF7545_1730	72.0	0.0000000000000437	Terminase small subunit	N/A
Pfam	UHGV-0027862_30	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0027862_30	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0027862_30	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0027862_31	phrog_5902	248.8	0	N/A	unknown function
UniRef90	UHGV-0027862_31	UniRef90_UPI0018C4A0E6	562.0	0	terminase	N/A
eggNOG-mapper	UHGV-0027862_31	1200557.JHWV01000001_gene277	561.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-0027862_31	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0027862_31	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0027862_33	phrog_332	414.3	0	head-tail adaptor	connector
UniRef90	UHGV-0027862_33	UniRef90_A0A8B2QMC7	671.0	0	Head-to-tail connecting protein	N/A
eggNOG-mapper	UHGV-0027862_33	585503.HMPREF7545_1733	563.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0027862_33	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0027862_33	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0027862_35	phrog_458	87.9	1.5e-25	protease	other
UniRef90	UHGV-0027862_35	UniRef90_A0A6J5NV41	78.2	0.0000000000000257	Putative protease	N/A
eggNOG-mapper	UHGV-0027862_35	585503.HMPREF7545_1735	145.0	2.40995e-41	N/A	N/A
PHROG	UHGV-0027862_36	phrog_212	103.3	0	major head protein	head and packaging
UniRef90	UHGV-0027862_36	UniRef90_A0A0U1KVA9	300.0	0	N/A	N/A
eggNOG-mapper	UHGV-0027862_36	585503.HMPREF7545_1736	387.0	0	N/A	N/A
Pfam	UHGV-0027862_36	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0027862_36	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027862_37	585503.HMPREF7545_1737	112.0	2.44e-30	N/A	N/A
structural_annotation	UHGV-0027862_37	PF21190,NF033675	N/A	N/A	N/A	N/A
Pfam	UHGV-0027862_38	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
structural_annotation	UHGV-0027862_38	PF12949	N/A	N/A	N/A	N/A
PHROG	UHGV-0027862_39	phrog_394	171.2	0	tail protein	tail
UniRef90	UHGV-0027862_39	UniRef90_A0A8B2QU77	227.0	0	Tail tube protein	N/A
eggNOG-mapper	UHGV-0027862_39	585503.HMPREF7545_1739	173.0	0	N/A	N/A
structural_annotation	UHGV-0027862_39	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0027862_40	phrog_376	513.8	0	tail protein	tail
UniRef90	UHGV-0027862_40	UniRef90_A0A0U1KV93	418.0	0	N/A	N/A
eggNOG-mapper	UHGV-0027862_40	585503.HMPREF7545_1740	642.0	0	N/A	N/A
structural_annotation	UHGV-0027862_40	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0027862_41	phrog_308	88.1	1.1e-25	internal virion protein	head and packaging
UniRef90	UHGV-0027862_41	UniRef90_UPI0009E1953E	74.3	0.000000000000217	N/A	N/A
eggNOG-mapper	UHGV-0027862_41	585503.HMPREF7545_1741	115.0	1.77e-30	N/A	N/A
structural_annotation	UHGV-0027862_41	PF11039,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0027862_42	phrog_418	52.9	0.0000000000000064	internal virion protein	head and packaging
structural_annotation	UHGV-0027862_42	TIGR02971	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027862_43	UniRef90_A0A1B3X2T2	198.0	0	NlpC/P60 domain-containing protein	N/A
structural_annotation	UHGV-0027862_43	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0027862_44	phrog_9880	391.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0027862_44	568816.Acin_1824	503.0	0	N/A	N/A
Pfam	UHGV-0027862_44	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
PHROG	UHGV-0027862_45	phrog_6921	88.5	1e-25	tail fiber protein	tail
eggNOG-mapper	UHGV-0027862_45	556269.ACDQ01000006_gene1706	134.0	1.57e-30	Phage Tail Collar Domain	N/A
COG	UHGV-0027862_45	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0027862_45	PF03906,NF012201,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0027862_46	phrog_1141	68.6	5.4e-20	tail fiber protein	tail
UniRef90	UHGV-0027862_46	UniRef90_A0A1Q6R2G9	142.0	1.48e-40	N/A	N/A
eggNOG-mapper	UHGV-0027862_46	556269.ACDQ01000006_gene1645	69.7	0.000000000000922	N/A	N/A
Pfam	UHGV-0027862_46	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0027862_46	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0027862_47	phrog_4105	84.0	1.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0027862_47	537013.CLOSTMETH_01753	75.9	1.88e-16	N/A	N/A
PHROG	UHGV-0027862_49	phrog_872	86.3	3.9e-25	N/A	unknown function
UniRef90	UHGV-0027862_49	UniRef90_UPI0014125E01	122.0	1.54e-34	N/A	N/A
eggNOG-mapper	UHGV-0027862_49	1519439.JPJG01000060_gene1880	120.0	3.12e-32	N/A	N/A
Pfam	UHGV-0027862_49	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0027862_49	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0027862_49	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0027862_50	phrog_918	102.1	2.7e-30	N/A	unknown function
UniRef90	UHGV-0027862_50	UniRef90_UPI000EC62F11	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-0027862_50	537007.BLAHAN_05515	144.0	4.62428e-44	N/A	N/A
Pfam	UHGV-0027862_50	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0027862_50	PF19791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027862_51	1392502.JNIO01000008_gene1280	116.0	1.89e-31	N/A	N/A