UHGV-0028092 (vOTU-083928)

Viral Genome: UHGV-0028092

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0028092
vOTU ID	vOTU-083928
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_21_1740__NODE_1513_length_42735_cov_4.934010
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9819
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.5
Jumbo phage	No

Genome content
Genome length (bp)	42,735
GC content	57.28%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	94%
Average CDS length (bps)	649.26
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0028092_1	UniRef90_R6T5E1	665.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0028092_1	1519439.JPJG01000060_gene1905	704.0	0	N/A	N/A
structural_annotation	UHGV-0028092_2	PF18962,NF011773	N/A	N/A	N/A	N/A
Pfam	UHGV-0028092_3	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0028092_3	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
eggNOG-mapper	UHGV-0028092_4	1232443.BAIA02000078_gene14	56.2	0.0000037	nuclear chromosome segregation	N/A
COG	UHGV-0028092_4	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0028092_6	phrog_30034	108.0	1.1e-31	N/A	unknown function
UniRef90	UHGV-0028092_6	UniRef90_A0A3D1XGA4	219.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0028092_6	411471.SUBVAR_06976	96.7	3.94e-23	N/A	N/A
Pfam	UHGV-0028092_6	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
KOfam	UHGV-0028092_7	K20846	66.5	2.7e-19	cgkA; kappa-carrageenase [EC:3.2.1.83]	N/A
PHROG	UHGV-0028092_7	phrog_215	91.3	5.6e-27	structural protein with Ig domain	head and packaging
UniRef90	UHGV-0028092_7	UniRef90_A0A1I1Z9R5	110.0	6.62e-22	Calcineurin-like phosphoesterase	N/A
eggNOG-mapper	UHGV-0028092_7	485916.Dtox_1961	80.9	0.000000000000841	PFAM Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0028092_7	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0028092_7	COG3210	N/A	N/A	Large exoprotein involved in heme utilization or adhesion	N/A
structural_annotation	UHGV-0028092_7	PF02368,PF09423,MF_00575,NF003743,NF005261,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0028092_8	phrog_937	48.8	0.00000000000013	hemolysin	other
eggNOG-mapper	UHGV-0028092_8	1519439.JPJG01000023_gene533	73.2	0.00000000000000359	N/A	N/A
PHROG	UHGV-0028092_10	phrog_6918	90.6	1.1e-26	holin	lysis
UniRef90	UHGV-0028092_10	UniRef90_G9YP36	110.0	3.77e-29	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-0028092_10	1297617.JPJD01000020_gene301	93.6	2.08e-23	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0028092_10	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0028092_10	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-0028092_11	K01447	109.3	4.8e-32	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0028092_11	phrog_1794	111.6	9.1e-33	amidase	lysis
UniRef90	UHGV-0028092_11	UniRef90_A0A3D4VSU2	164.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0028092_11	411470.RUMGNA_02087	150.0	6.32e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0028092_11	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0028092_11	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0028092_11	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028092_12	UniRef90_A0A843IZ65	62.8	0.0000000000214	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-0028092_12	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0028092_12	PF04545,MF_00245,TIGR02985,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0028092_13	phrog_5783	299.2	0	N/A	unknown function
UniRef90	UHGV-0028092_13	UniRef90_A0A7X2P6J8	292.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-0028092_13	742742.HMPREF9452_00448	281.0	0	NYN domain	N/A
Pfam	UHGV-0028092_13	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-0028092_13	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-0028092_13	PF01936,TIGR00288,COG1432	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028092_16	UniRef90_A0A8F0WD75	75.5	0.0000000000000722	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0028092_16	1378168.N510_03079	69.7	0.00000000000479	N/A	N/A
KOfam	UHGV-0028092_17	K14059	130.4	2.4e-38	int; integrase	N/A
PHROG	UHGV-0028092_17	phrog_1	142.0	5.20022e-42	integrase	integration and excision
UniRef90	UHGV-0028092_17	UniRef90_A0A2Z4QB94	317.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0028092_17	641112.ACOK01000111_gene1860	107.0	1.16e-23	Phage integrase family	N/A
Pfam	UHGV-0028092_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0028092_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0028092_17	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028092_18	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0028092_21	K18830	61.5	1.8e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0028092_21	phrog_8	50.3	0.000000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0028092_21	UniRef90_A0A2U1BEG8	128.0	8.67e-36	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0028092_21	445972.ANACOL_03315	120.0	1.83e-33	N/A	N/A
PADLOC	UHGV-0028092_21	retron_type_VI_hth_cluster2_1	40.4	0.000000000057	N/A	Retron
Pfam	UHGV-0028092_21	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0028092_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0028092_21	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028092_29	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028092_31	UniRef90_A0A098GES5	103.0	5.68e-27	Putative phage associated protein	N/A
structural_annotation	UHGV-0028092_31	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028092_32	UniRef90_UPI0012AD39DD	60.8	0.00000005	leucine-rich repeat protein	N/A
eggNOG-mapper	UHGV-0028092_32	1250232.JQNJ01000001_gene2876	53.9	0.00000819	Leucine rich repeats (6 copies)	N/A
COG	UHGV-0028092_32	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
structural_annotation	UHGV-0028092_33	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-0028092_37	phrog_3136	131.7	2.5e-39	N/A	unknown function
UniRef90	UHGV-0028092_37	UniRef90_UPI001C02A61B	96.7	1.56e-21	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0028092_37	1235793.C809_02645	67.4	0.0000000000558	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0028092_37	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0028092_37	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0028092_38	phrog_355	61.3	1.6e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028092_38	UniRef90_A0A413FXK8	109.0	3.44e-29	N/A	N/A
eggNOG-mapper	UHGV-0028092_38	573061.Clocel_3558	76.6	6.68e-17	N/A	N/A
Pfam	UHGV-0028092_38	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0028092_38	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0028092_38	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0028092_39	phrog_38832	57.6	1.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0028092_39	665956.HMPREF1032_00143	68.2	0.00000000000927	N/A	N/A
structural_annotation	UHGV-0028092_40	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0028092_44	phrog_2245	84.9	8.6e-25	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0028092_44	428125.CLOLEP_01814	80.1	5.06e-18	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-0028092_44	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0028092_45	phrog_190	106.8	1.9e-31	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028092_45	UniRef90_UPI0006C2AC63	125.0	7.05e-34	N/A	N/A
eggNOG-mapper	UHGV-0028092_45	693746.OBV_25250	119.0	2.32e-32	N/A	N/A
Pfam	UHGV-0028092_45	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0028092_45	PF06356	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028092_49	665956.HMPREF1032_03087	53.9	0.0000000673	N/A	N/A
PHROG	UHGV-0028092_50	phrog_3584	118.7	4.4e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0028092_50	537013.CLOSTMETH_02141	77.8	0.00000000000000814	N/A	N/A
structural_annotation	UHGV-0028092_50	PF21578,MF_00360	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028092_51	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0028092_52	K06909	135.2	6.50001e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0028092_52	phrog_979	128.9	3.60001e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0028092_52	UniRef90_A0A810Q5R0	617.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0028092_52	1410650.JHWL01000003_gene2834	602.0	0	N/A	N/A
Pfam	UHGV-0028092_52	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0028092_52	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0028092_52	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0028092_53	phrog_511	210.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0028092_53	1410650.JHWL01000003_gene2827	330.0	0	N/A	N/A
structural_annotation	UHGV-0028092_53	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0028092_54	phrog_156	305.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0028092_54	1410650.JHWL01000003_gene2833	536.0	0	N/A	N/A
structural_annotation	UHGV-0028092_54	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0028092_55	phrog_13908	196.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0028092_55	1410650.JHWL01000003_gene2831	127.0	8.82e-32	N/A	N/A
PHROG	UHGV-0028092_56	phrog_1357	245.6	0	major head protein	head and packaging
UniRef90	UHGV-0028092_56	UniRef90_A0A2V2CFL5	397.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0028092_56	1410650.JHWL01000003_gene2830	293.0	0	N/A	N/A
Pfam	UHGV-0028092_56	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0028092_56	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0028092_56	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0028092_57	phrog_15239	44.5	0.000000000002	N/A	unknown function
PHROG	UHGV-0028092_58	phrog_12105	113.9	8.9e-34	N/A	unknown function
eggNOG-mapper	UHGV-0028092_58	1226322.HMPREF1545_03850	56.6	0.0000000341	N/A	N/A
eggNOG-mapper	UHGV-0028092_59	537007.BLAHAN_05255	66.2	0.00000000923	N/A	N/A
UniRef90	UHGV-0028092_61	UniRef90_R5DCX9	189.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0028092_61	1410650.JHWL01000003_gene2815	129.0	1.56e-30	N/A	N/A
PHROG	UHGV-0028092_62	phrog_22978	107.3	5.4e-32	N/A	unknown function
eggNOG-mapper	UHGV-0028092_62	1321782.HMPREF1986_00356	61.6	0.00000236	N/A	N/A
Pfam	UHGV-0028092_62	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C