UHGV-0028180 (vOTU-074444)

Viral Genome: UHGV-0028180

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0028180
vOTU ID	vOTU-074444
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_H_4_2261__NODE_409_length_42346_cov_12.423029
Associated BioSample	SAMEA4766204
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.69
Jumbo phage	No

Genome content
Genome length (bp)	42,346
GC content	36.38%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	96%
Average CDS length (bps)	689.34
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0028180_1	UniRef90_A0A6N2YBZ7	287.0	0	Putative beta-barrel protein YwiB	N/A
eggNOG-mapper	UHGV-0028180_1	1128111.HMPREF0870_00763	291.0	0	N/A	N/A
Pfam	UHGV-0028180_1	PF09148	N/A	N/A	N/A	DUF1934
COG	UHGV-0028180_1	COG4506	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_3	phrog_10797	217.7	0	N/A	unknown function
UniRef90	UHGV-0028180_3	UniRef90_A0A1B1I041	133.0	9.98e-36	Glycoprotease	N/A
eggNOG-mapper	UHGV-0028180_3	883156.HMPREF9282_01266	150.0	9.94922e-44	N/A	N/A
structural_annotation	UHGV-0028180_3	PF06531	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_4	phrog_34863	56.0	3.4e-16	N/A	unknown function
UniRef90	UHGV-0028180_4	UniRef90_UPI001D017339	155.0	1.5134e-43	chitosanase	N/A
eggNOG-mapper	UHGV-0028180_4	546273.VEIDISOL_01083	228.0	0	LysM domain	N/A
Pfam	UHGV-0028180_4	PF21277	N/A	N/A	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
COG	UHGV-0028180_4	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0028180_4	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_6	phrog_23091	225.5	0	N/A	unknown function
structural_annotation	UHGV-0028180_6	PF05105,NF035928	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028180_8	UniRef90_A0A2S7ZGN5	1226.0	0	Pectate_lyase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0028180_8	1443111.JASG01000004_gene3704	62.0	0.000000703	Pectate lyase superfamily protein	N/A
Pfam	UHGV-0028180_8	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-0028180_8	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-0028180_8	PF05096,PF03906,MF_03008,TIGR03866,COG3204	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_9	phrog_9880	263.6	0	N/A	unknown function
UniRef90	UHGV-0028180_9	UniRef90_D1YMD8	3166.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0028180_9	699218.HMPREF0889_0277	489.0	0	N/A	N/A
Pfam	UHGV-0028180_9	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
COG	UHGV-0028180_10	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0028180_10	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_11	phrog_418	64.3	1.8e-18	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0028180_11	1401067.HMPREF0872_06765	170.0	0	N/A	N/A
structural_annotation	UHGV-0028180_11	PF05384,TIGR01010,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_12	phrog_308	76.4	3.9e-22	internal virion protein	head and packaging
UniRef90	UHGV-0028180_12	UniRef90_UPI001D08FF44	326.0	0	N/A	N/A
Pfam	UHGV-0028180_12	PF11090	N/A	N/A	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
structural_annotation	UHGV-0028180_12	PF11039,MF_02210,NF000165,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_13	phrog_376	647.0	0	tail protein	tail
UniRef90	UHGV-0028180_13	UniRef90_A0A3A4JUE0	326.0	0	E1_FCCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0028180_13	1401067.HMPREF0872_06775	652.0	0	N/A	N/A
structural_annotation	UHGV-0028180_13	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_14	phrog_394	165.7	0	tail protein	tail
eggNOG-mapper	UHGV-0028180_14	1401067.HMPREF0872_06780	214.0	0	N/A	N/A
structural_annotation	UHGV-0028180_14	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_16	phrog_427	72.7	4.7e-21	N/A	unknown function
structural_annotation	UHGV-0028180_16	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_17	phrog_212	176.2	0	major head protein	head and packaging
UniRef90	UHGV-0028180_17	UniRef90_A0A239Z8I8	429.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0028180_17	1401067.HMPREF0872_06795	454.0	0	N/A	N/A
Pfam	UHGV-0028180_17	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0028180_17	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_18	phrog_458	88.1	1.3e-25	protease	other
eggNOG-mapper	UHGV-0028180_18	1401067.HMPREF0872_06800	119.0	5.72e-31	N/A	N/A
PHROG	UHGV-0028180_19	phrog_528	69.8	2.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0028180_19	568816.Acin_1833	61.2	0.00000000012	N/A	N/A
PHROG	UHGV-0028180_20	phrog_332	456.6	0	head-tail adaptor	connector
UniRef90	UHGV-0028180_20	UniRef90_UPI001D07F371	1067.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0028180_20	1401067.HMPREF0872_06810	595.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0028180_20	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0028180_20	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_22	phrog_5902	251.4	0	N/A	unknown function
UniRef90	UHGV-0028180_22	UniRef90_UPI0018A6EFE4	574.0	0	terminase	N/A
eggNOG-mapper	UHGV-0028180_22	1200557.JHWV01000001_gene277	578.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-0028180_22	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0028180_22	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0028180_23	K07474	129.9	3.5e-38	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0028180_23	phrog_51	134.1	6.8e-40	terminase small subunit	head and packaging
UniRef90	UHGV-0028180_23	UniRef90_A0A239Z9J1	253.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0028180_23	1280689.AUJC01000003_gene961	116.0	1.81e-31	Terminase small subunit	N/A
Pfam	UHGV-0028180_23	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0028180_23	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0028180_23	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_27	phrog_36	47.2	0.0000000000004	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0028180_27	706434.HMPREF9429_00383	55.8	0.000000101	N/A	N/A
structural_annotation	UHGV-0028180_27	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_29	phrog_21026	72.4	2.2e-21	N/A	unknown function
KOfam	UHGV-0028180_32	K01520	151.8	4.2039e-45	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0028180_32	phrog_135	150.2	8.40779e-45	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028180_32	UniRef90_UPI001D0616FF	249.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0028180_32	36080.S2JYN8	122.0	1.31e-33	dUTPase	N/A
Pfam	UHGV-0028180_32	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0028180_32	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0028180_32	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0028180_32	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028180_33	PF13384,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_34	phrog_244	77.0	3.1e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028180_34	UniRef90_A0A841R0Q1	150.0	4.2039e-45	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0028180_34	1123250.KB908417_gene653	137.0	1.04e-40	N/A	N/A
structural_annotation	UHGV-0028180_34	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_35	phrog_918	93.8	9.6e-28	N/A	unknown function
UniRef90	UHGV-0028180_35	UniRef90_UPI001CACBF45	170.0	0	N/A	N/A
eggNOG-mapper	UHGV-0028180_35	1401067.HMPREF0872_03440	109.0	2.11e-30	N/A	N/A
Pfam	UHGV-0028180_35	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0028180_35	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0028180_36	K00571	120.1	2.4e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0028180_36	phrog_67	97.3	1e-29	DNA methyltransferase	other
UniRef90	UHGV-0028180_36	UniRef90_UPI00196047F8	513.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0028180_36	749222.Nitsa_1817	387.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0028180_36	MTase_II_00157	99.7	5.7e-30	Type II methyltransferase	RM
Pfam	UHGV-0028180_36	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0028180_36	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0028180_36	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_37	phrog_2776	49.1	0.000000000000077	N/A	unknown function
UniRef90	UHGV-0028180_37	UniRef90_A0A2S7ZCT0	161.0	0	DNA repair protein MmcB-related protein	N/A
structural_annotation	UHGV-0028180_37	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_39	phrog_1672	46.0	0.00000000000076	N/A	unknown function
COG	UHGV-0028180_39	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
PHROG	UHGV-0028180_40	phrog_774	63.9	3.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0028180_40	1042156.CXIVA_01820	57.0	0.00000000114	N/A	N/A
KOfam	UHGV-0028180_41	K03111	143.6	2.10055e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0028180_41	phrog_44	127.6	8.6e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028180_41	UniRef90_UPI001D069DF3	221.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0028180_41	936589.HMPREF1521_1228	196.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0028180_41	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0028180_41	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0028180_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0028180_41	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0028180_41	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_43	phrog_9804	58.6	9.7e-17	N/A	unknown function
structural_annotation	UHGV-0028180_43	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_44	phrog_5708	231.9	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028180_44	UniRef90_A0A6A4UXR4	165.0	0	Phage replication initiation	N/A
eggNOG-mapper	UHGV-0028180_44	706434.HMPREF9429_00547	231.0	0	DnaD domain protein	N/A
COG	UHGV-0028180_44	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0028180_44	PF09681,TIGR01446,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0028180_46	K07451	42.6	0.00000000001	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0028180_46	phrog_7370	50.0	0.000000000000049	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028180_46	UniRef90_A0A833C9X0	80.5	6.33e-18	HNH endonuclease	N/A
Pfam	UHGV-0028180_46	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0028180_46	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0028180_46	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_47	phrog_72	61.2	1.6e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028180_47	UniRef90_R5BGH3	133.0	2.88e-36	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0028180_47	1507.HMPREF0262_00432	100.0	2.35e-24	N/A	N/A
PHROG	UHGV-0028180_48	phrog_7838	115.6	3.5e-34	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028180_48	UniRef90_UPI001D07B780	432.0	0	RAD52 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0028180_48	1485543.JMME01000021_gene803	118.0	1.07e-30	N/A	N/A
Pfam	UHGV-0028180_48	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
structural_annotation	UHGV-0028180_48	PF06420,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_49	phrog_674	84.4	4.1e-25	N/A	unknown function
UniRef90	UHGV-0028180_49	UniRef90_UPI001D090BA8	516.0	0	N/A	N/A
eggNOG-mapper	UHGV-0028180_49	1415775.U729_15	79.0	0.0000000000000423	N/A	N/A
Pfam	UHGV-0028180_49	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0028180_49	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028180_50	NF008912	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_51	phrog_7735	79.5	3.5e-23	excisionase	integration and excision
UniRef90	UHGV-0028180_51	UniRef90_UPI001D08B64F	167.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0028180_51	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0028180_51	PF12728,MF_01155,NF033787,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0028180_52	K07741	148.8	7.70714e-44	antB; anti-repressor protein	N/A
PHROG	UHGV-0028180_52	phrog_130	269.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0028180_52	UniRef90_UPI000751A705	432.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0028180_52	1589751.A0A0C5AEJ9_9CAUD	299.0	0	DNA binding	N/A
Pfam	UHGV-0028180_52	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0028180_52	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0028180_52	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
KOfam	UHGV-0028180_53	K07729	55.5	0.0000000000000014	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0028180_53	phrog_8	47.1	0.00000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-0028180_53	UniRef90_UPI001CB0AC39	123.0	1.15e-35	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0028180_53	650150.ERH_0585	71.2	0.00000000000000107	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0028180_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0028180_53	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0028180_54	K22299	59.5	8.2e-17	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0028180_54	phrog_8	81.1	1.9e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0028180_54	UniRef90_UPI001D06F06D	208.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0028180_54	1111454.HMPREF1250_1028	107.0	2.39e-28	carbohydrate binding	N/A
PADLOC	UHGV-0028180_54	retron_type_VI_hth_cluster2_1	47.7	0.00000000000034	N/A	Retron
Pfam	UHGV-0028180_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0028180_54	COG2390	N/A	N/A	DNA-binding transcriptional regulator LsrR, DeoR family	N/A
structural_annotation	UHGV-0028180_54	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0028180_57	phrog_20936	110.1	9.7e-33	N/A	unknown function
UniRef90	UHGV-0028180_57	UniRef90_UPI001D078346	166.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0028180_57	861450.HMPREF0080_02020	57.0	0.0000000014	N/A	N/A
Pfam	UHGV-0028180_57	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0028180_57	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0028180_58	K14059	217.2	0	int; integrase	N/A
PHROG	UHGV-0028180_58	phrog_1	200.4	0	integrase	integration and excision
UniRef90	UHGV-0028180_58	UniRef90_UPI001D0692F2	682.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0028180_58	1232428.CAVO010000003_gene1025	268.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0028180_58	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0028180_58	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0028180_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0028180_58	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0028180_58	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028180_59	1128111.HMPREF0870_00764	64.3	0.000000000000344	GIY-YIG catalytic domain protein	N/A
COG	UHGV-0028180_59	COG2827	N/A	N/A	Predicted endonuclease, GIY-YIG superfamily	N/A