UHGV-0028534 (vOTU-085114)

Viral Genome: UHGV-0028534

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0028534
vOTU ID	vOTU-085114
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_H_9_1235__NODE_1854_length_38249_cov_7.015797
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.64 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9807
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.69
Jumbo phage	No

Genome content
Genome length (bp)	38,249
GC content	55.20%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	92%
Average CDS length (bps)	527.28
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 90.64)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0028534_1	1160721.RBI_I00206	55.1	0.00000000495	N/A	N/A
Pfam	UHGV-0028534_1	PF09274	N/A	N/A	ParG	ParG
PHROG	UHGV-0028534_2	phrog_3754	99.7	2.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-0028534_2	476272.RUMHYD_01764	151.0	1.4013e-45	N/A	N/A
PHROG	UHGV-0028534_3	phrog_21718	89.1	5.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0028534_3	397290.C810_05210	77.4	9.11e-16	N/A	N/A
PHROG	UHGV-0028534_4	phrog_22984	70.3	2.5e-20	N/A	unknown function
PHROG	UHGV-0028534_5	phrog_16490	192.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0028534_5	397290.C810_01328	148.0	4.46e-40	N/A	N/A
PHROG	UHGV-0028534_6	phrog_20016	197.7	0	N/A	unknown function
UniRef90	UHGV-0028534_6	UniRef90_A0A285PT46	214.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0028534_6	1226322.HMPREF1545_00077	178.0	0	N/A	N/A
structural_annotation	UHGV-0028534_6	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028534_7	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0028534_9	K14059	140.4	1.99993e-41	int; integrase	N/A
PHROG	UHGV-0028534_9	phrog_1	166.1	0	integrase	integration and excision
UniRef90	UHGV-0028534_9	UniRef90_A0A6N7TNQ4	714.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0028534_9	411471.SUBVAR_05137	264.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0028534_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0028534_9	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0028534_9	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0028534_10	K15773	40.8	0.00000000004	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
UniRef90	UHGV-0028534_10	UniRef90_A0A6N7TLT0	366.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0028534_10	266265.Bxe_A3948	52.8	0.000000675	Helix-turn-helix domain	N/A
Pfam	UHGV-0028534_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0028534_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0028534_10	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_13	phrog_4980	114.5	4e-34	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0028534_13	UniRef90_UPI000F643789	84.0	5.89e-17	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-0028534_13	428127.EUBDOL_01530	75.1	0.000000000000177	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0028534_13	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0028534_13	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0028534_13	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0028534_13	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028534_16	PF09202,MF_01819,NF041230,COG1321	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028534_17	UniRef90_UPI001CBE4822	99.8	8.47e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0028534_17	411483.FAEPRAA2165_00756	56.6	0.0000000524	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0028534_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0028534_17	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0028534_17	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028534_18	UniRef90_A0A1C7FQD9	82.0	5.7e-19	Transcriptional regulator	N/A
Pfam	UHGV-0028534_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0028534_18	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_20	phrog_463	226.9	0	anti-repressor	transcription regulation
UniRef90	UHGV-0028534_20	UniRef90_UPI00137B411D	274.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0028534_20	411490.ANACAC_00813	235.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0028534_20	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0028534_20	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0028534_20	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0028534_20	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0028534_22	K17080	73.5	4e-22	PHB1; prohibitin 1	N/A
PHROG	UHGV-0028534_22	phrog_200	153.2	1.4013e-45	lipoprotein	other
UniRef90	UHGV-0028534_22	UniRef90_D4KCF4	386.0	0	Membrane protease subunits, stomatin/prohibitin homologs	N/A
eggNOG-mapper	UHGV-0028534_22	657322.FPR_23460	386.0	0	prohibitin homologues	N/A
Pfam	UHGV-0028534_22	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-0028534_22	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-0028534_22	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028534_23	886882.PPSC2_p0363	47.4	0.00000695	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0028534_23	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0028534_27	PF06718	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_29	phrog_7838	116.3	2.1e-34	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028534_29	UniRef90_A0A8D9UGW3	172.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0028534_29	742767.HMPREF9456_02052	138.0	2.97e-38	N/A	N/A
structural_annotation	UHGV-0028534_29	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-0028534_30	K03111	146.5	2.49431e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0028534_30	phrog_44	145.0	3.50325e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028534_30	UniRef90_D4K451	266.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0028534_30	718252.FP2_06770	266.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0028534_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0028534_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0028534_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0028534_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0028534_30	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0028534_31	K02086	64.6	1.5e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0028534_31	phrog_15768	72.2	6.6e-21	N/A	unknown function
UniRef90	UHGV-0028534_31	UniRef90_A0A844D5V0	168.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0028534_31	476272.RUMHYD_03358	66.2	0.000000000364	N/A	N/A
Pfam	UHGV-0028534_31	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0028534_31	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0028534_31	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0028534_31	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028534_32	PF11417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028534_33	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_35	phrog_757	228.6	0	DNA methyltransferase	other
UniRef90	UHGV-0028534_35	UniRef90_UPI001A9B5584	221.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0028534_35	748224.HMPREF9436_03069	228.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0028534_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0028534_35	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_37	phrog_7711	106.4	1.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-0028534_37	1304866.K413DRAFT_1204	99.8	3.66e-25	N/A	N/A
KOfam	UHGV-0028534_38	K01160	58.3	2.4e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0028534_38	phrog_34	59.6	6.3e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028534_38	UniRef90_A0A6N7TND6	204.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0028534_38	525919.Apre_0813	127.0	3.59e-36	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0028534_38	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0028534_38	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0028534_38	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_40	phrog_36	57.8	2.1e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0028534_40	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_41	phrog_606	90.8	1.3e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0028534_41	UniRef90_UPI001C02EFD1	320.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0028534_41	397290.C810_05185	142.0	9.22993e-41	DNA-packaging protein gp3	N/A
Pfam	UHGV-0028534_41	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0028534_41	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0028534_42	K06909	141.1	9.90017e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0028534_42	phrog_10250	173.6	0	N/A	unknown function
UniRef90	UHGV-0028534_42	UniRef90_A0A844D8I4	840.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0028534_42	411490.ANACAC_00783	486.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0028534_42	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0028534_42	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0028534_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0028534_42	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_43	phrog_64	119.4	1.4e-35	portal protein	head and packaging
UniRef90	UHGV-0028534_43	UniRef90_A0A6N7TNT3	890.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0028534_43	642492.Clole_2764	81.3	0.00000000000013	phage portal protein, SPP1	N/A
Pfam	UHGV-0028534_43	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0028534_43	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_45	phrog_2468	78.6	3.2e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0028534_45	UniRef90_A0A6N7TLR7	609.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0028534_45	1504822.CCNO01000013_gene286	111.0	6.37e-24	cell adhesion	N/A
Pfam	UHGV-0028534_45	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0028534_45	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028534_45	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_47	phrog_8680	202.4	0	N/A	unknown function
UniRef90	UHGV-0028534_47	UniRef90_A0A844D688	446.0	0	N/A	N/A
eggNOG-mapper	UHGV-0028534_47	1423790.BN53_04265	179.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0028534_47	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0028534_47	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0028534_47	PF14386	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028534_48	PF17599,PF14282,NF011879	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_50	phrog_5	55.2	0.0000000000000016	tail completion or Neck1 protein	connector
UniRef90	UHGV-0028534_50	UniRef90_A0A6N7TNP6	197.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0028534_50	1443125.Z962_05620	83.6	1.77e-18	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0028534_50	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0028534_50	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0028534_50	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028534_52	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_53	phrog_544	107.3	1.5e-31	major head protein	head and packaging
UniRef90	UHGV-0028534_53	UniRef90_A0A1C6B5R0	315.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0028534_53	476272.RUMHYD_01776	282.0	0	N/A	N/A
structural_annotation	UHGV-0028534_53	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_55	phrog_17977	45.0	0.0000000000015	N/A	unknown function
UniRef90	UHGV-0028534_55	UniRef90_A0A844DHJ8	127.0	2.12e-35	Phage head closure protein	N/A
structural_annotation	UHGV-0028534_55	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028534_56	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_57	phrog_885	59.2	5e-17	major tail protein	tail
eggNOG-mapper	UHGV-0028534_57	1111121.HMPREF1247_0789	99.0	3.41e-23	N/A	N/A
structural_annotation	UHGV-0028534_57	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_60	phrog_28775	75.9	1e-22	tail length tape measure protein	tail
UniRef90	UHGV-0028534_60	UniRef90_A0A6N7TLD3	535.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0028534_60	1492737.FEM08_12070	145.0	1.19e-33	tape measure	N/A
Pfam	UHGV-0028534_60	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0028534_60	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0028534_60	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0028534_60	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_61	phrog_3558	276.1	0	tail protein	tail
UniRef90	UHGV-0028534_61	UniRef90_UPI001C01D15B	683.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0028534_61	1120933.ATUY01000002_gene164	156.0	9.66e-38	Prophage endopeptidase tail	N/A
Pfam	UHGV-0028534_61	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0028534_61	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0028534_61	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028534_62	1235792.C808_00094	90.9	5.18e-20	phage tail	N/A
COG	UHGV-0028534_62	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0028534_62	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_64	phrog_10993	329.4	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0028534_64	UniRef90_A0A350TI55	437.0	0	N/A	N/A
eggNOG-mapper	UHGV-0028534_64	718252.FP2_16970	391.0	0	N/A	N/A
Pfam	UHGV-0028534_64	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0028534_64	PF19789,PF18911	N/A	N/A	N/A	N/A
PHROG	UHGV-0028534_65	phrog_29248	40.0	0.000000000061	N/A	unknown function
UniRef90	UHGV-0028534_66	UniRef90_UPI001D07AB37	80.1	8.39e-19	XkdX family protein	N/A
eggNOG-mapper	UHGV-0028534_66	1203606.HMPREF1526_00257	80.5	1.24e-19	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0028534_66	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0028534_66	PF09693	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028534_67	411483.FAEPRAA2165_00757	166.0	0	N/A	N/A
structural_annotation	UHGV-0028534_67	PF10651	N/A	N/A	N/A	N/A