UHGV-0028848 (vOTU-010746)

Viral Genome: UHGV-0028848

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0028848
vOTU ID	vOTU-010746
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_24_1660__NODE_2727_length_41728_cov_5.546421
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9559
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.49
Jumbo phage	No

Genome content
Genome length (bp)	41,728
GC content	27.47%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	87%
Average CDS length (bps)	625.09
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0028848_2	phrog_36443	443.8	0	N/A	unknown function
UniRef90	UHGV-0028848_2	UniRef90_UPI001656337A	852.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0028848_2	411459.RUMOBE_00923	434.0	0	N/A	N/A
Pfam	UHGV-0028848_2	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0028848_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0028848_2	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
NCBIFam	UHGV-0028848_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0028848_2	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0028848_3	phrog_1401	108.8	3.4e-32	N/A	unknown function
UniRef90	UHGV-0028848_3	UniRef90_UPI000A16CD19	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-0028848_3	1499683.CCFF01000014_gene3897	144.0	5.63322e-43	N/A	N/A
Pfam	UHGV-0028848_3	PF07761	N/A	N/A	N/A	DUF1617
structural_annotation	UHGV-0028848_3	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0028848_4	phrog_2566	87.7	6.6e-26	N/A	unknown function
UniRef90	UHGV-0028848_4	UniRef90_A0A7V8IA60	73.2	0.00000000000000385	N/A	N/A
eggNOG-mapper	UHGV-0028848_4	1499683.CCFF01000014_gene3898	77.8	1.08e-17	N/A	N/A
PHROG	UHGV-0028848_6	phrog_33	41.3	0.000000000033	distal tail protein Dit	tail
UniRef90	UHGV-0028848_6	UniRef90_A0A1C6GX60	84.3	3.1e-16	Phage-related protein	N/A
eggNOG-mapper	UHGV-0028848_6	457396.CSBG_01058	85.5	1.89e-17	phage tail	N/A
COG	UHGV-0028848_6	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0028848_6	PF20753,PF19266,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0028848_7	K20478	83.0	5.3e-25	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0028848_7	phrog_1533	434.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0028848_7	UniRef90_A0A1C5YFW8	712.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0028848_7	1151292.QEW_0351	450.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0028848_7	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0028848_7	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0028848_7	COG5283	N/A	N/A	Phage-related tail protein	N/A
eggNOG-mapper	UHGV-0028848_8	1476973.JMMB01000007_gene1770	64.3	0.000000000203	N/A	N/A
PHROG	UHGV-0028848_9	phrog_88	110.8	1.1e-32	major tail protein	tail
UniRef90	UHGV-0028848_9	UniRef90_A0A1C5YFI0	360.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0028848_9	1151292.QEW_0347	115.0	2.28e-29	Phage tail tube protein	N/A
NCBIFam	UHGV-0028848_9	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0028848_10	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0028848_11	phrog_5	42.5	0.000000000017	tail completion or Neck1 protein	connector
UniRef90	UHGV-0028848_11	UniRef90_UPI00164E1F80	105.0	2.18e-26	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0028848_11	1499684.CCNP01000020_gene2283	56.6	0.0000000268	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0028848_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0028848_11	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0028848_12	phrog_11176	140.3	1.29998e-41	head-tail adaptor	connector
UniRef90	UHGV-0028848_12	UniRef90_A0A1C5YFF2	359.0	0	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0028848_12	1423775.BAMN01000009_gene393	57.8	0.0000000375	N/A	N/A
Pfam	UHGV-0028848_12	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0028848_12	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0028848_12	PF05521,PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0028848_13	phrog_749	61.7	1e-17	N/A	unknown function
UniRef90	UHGV-0028848_13	UniRef90_A0A1I3QJG6	101.0	6.79e-26	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0028848_13	1121866.AUGK01000006_gene881	74.7	5.66e-16	N/A	N/A
PHROG	UHGV-0028848_14	phrog_10	98.2	1e-28	major head protein	head and packaging
UniRef90	UHGV-0028848_14	UniRef90_A0A1C5YEV1	577.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0028848_14	1384484.AEQU_1180	327.0	0	Phage capsid family	N/A
Pfam	UHGV-0028848_14	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0028848_14	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0028848_14	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0028848_14	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0028848_15	K01358	123.1	3.2e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0028848_15	phrog_94	218.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0028848_15	UniRef90_A0A1I3QH58	370.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0028848_15	1235792.C808_00085	246.0	0	Clp protease	N/A
Pfam	UHGV-0028848_15	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0028848_15	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0028848_15	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0028848_16	phrog_12	122.3	3.1e-36	portal protein	head and packaging
UniRef90	UHGV-0028848_16	UniRef90_A0A316S734	511.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0028848_16	349161.Dred_2606	272.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0028848_16	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0028848_16	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0028848_16	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0028848_16	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0028848_17	phrog_9	280.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0028848_17	UniRef90_UPI000543D394	909.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0028848_17	1235798.C817_02581	593.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0028848_17	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0028848_17	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0028848_17	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0028848_17	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028848_18	UniRef90_A0A316S8M2	83.6	3.31e-17	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0028848_18	1415774.U728_1256	77.0	0.00000000000000187	N/A	N/A
Pfam	UHGV-0028848_18	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
Pfam	UHGV-0028848_18	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0028848_18	PF05119,PF06056,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0028848_19	K07451	43.3	0.0000000000068	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0028848_19	phrog_119	71.5	1.3e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028848_19	UniRef90_A0A1C5YEA0	204.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0028848_19	1415774.U728_1257	114.0	2.47e-31	HNH nucleases	N/A
Pfam	UHGV-0028848_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0028848_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0028848_20	phrog_1315	47.3	0.00000000000033	N/A	unknown function
PHROG	UHGV-0028848_22	phrog_1558	114.6	7.3e-34	N/A	unknown function
UniRef90	UHGV-0028848_22	UniRef90_UPI0005DD5B35	87.0	2.65e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0028848_22	1211817.CCAT010000007_gene1046	91.3	1.26e-20	N/A	N/A
structural_annotation	UHGV-0028848_22	PF08281,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0028848_23	phrog_824	154.8	0	N/A	unknown function
UniRef90	UHGV-0028848_23	UniRef90_UPI000B821158	223.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0028848_23	397288.C806_00096	146.0	1.48538e-43	VRR_NUC	N/A
Pfam	UHGV-0028848_23	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0028848_23	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0028848_26	phrog_774	62.9	7.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0028848_26	397290.C810_05225	72.4	0.00000000000000153	N/A	N/A
eggNOG-mapper	UHGV-0028848_28	1499683.CCFF01000014_gene3923	73.9	7.5e-16	N/A	N/A
KOfam	UHGV-0028848_29	K03111	115.7	6.6e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0028848_29	phrog_44	125.4	4.8e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028848_29	UniRef90_UPI00189AF047	174.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0028848_29	445973.CLOBAR_00026	162.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0028848_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0028848_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0028848_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0028848_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0028848_29	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0028848_31	phrog_463	191.0	0	anti-repressor	transcription regulation
UniRef90	UHGV-0028848_31	UniRef90_UPI001C0F3BD0	300.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0028848_31	573061.Clocel_3583	137.0	9.94e-36	BRO family, N-terminal domain	N/A
Pfam	UHGV-0028848_31	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0028848_31	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0028848_31	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0028848_31	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
Pfam	UHGV-0028848_32	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
PHROG	UHGV-0028848_36	phrog_3584	128.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028848_36	UniRef90_A0A4P8IFK4	162.0	2.94273e-44	N/A	N/A
eggNOG-mapper	UHGV-0028848_36	999413.HMPREF1094_02028	147.0	3.58e-39	N/A	N/A
structural_annotation	UHGV-0028848_36	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0028848_38	K18830	63.9	2.3e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0028848_38	phrog_2967	51.8	0.000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0028848_38	UniRef90_UPI0005E8B277	166.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0028848_38	445972.ANACOL_03315	86.3	3.3e-20	N/A	N/A
Pfam	UHGV-0028848_38	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0028848_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0028848_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028848_40	UniRef90_UPI0011DD9A0D	79.3	0.000000000000329	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0028848_40	1292035.H476_0276	166.0	1.4013e-45	N/A	N/A
KOfam	UHGV-0028848_43	K18640	115.1	7.9e-34	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-0028848_43	phrog_691	148.5	4.06377e-44	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028848_43	UniRef90_UPI0005DE0931	215.0	0	ParM/StbA family protein	N/A
eggNOG-mapper	UHGV-0028848_43	536233.CLO_0569	141.0	3.3e-37	cell division	N/A
Pfam	UHGV-0028848_43	PF17989	N/A	N/A	Actin like proteins N terminal domain	ALP_N
Pfam	UHGV-0028848_43	PF21522	N/A	N/A	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
COG	UHGV-0028848_43	COG0849	N/A	N/A	Cell division ATPase FtsA	N/A
structural_annotation	UHGV-0028848_43	PF06723,MF_02207,NF010498,COG1077	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028848_47	UniRef90_T4VFT5	146.0	1.33123e-43	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0028848_47	1292035.H476_3612	127.0	5.96e-37	N/A	N/A
Pfam	UHGV-0028848_47	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
KOfam	UHGV-0028848_48	K22299	40.3	0.000000000056	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0028848_48	UniRef90_A0A2P2BQG6	145.0	7.27274e-43	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-0028848_48	997296.PB1_16114	114.0	4.16e-31	Protein conserved in bacteria	N/A
COG	UHGV-0028848_48	COG1426	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028848_48	PF13560,MF_00535,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-0028848_49	phrog_87	87.7	7.7e-26	metallo-protease	other
UniRef90	UHGV-0028848_49	UniRef90_A0A6N3BMK6	158.0	0	Metallopeptidase ImmA	N/A
eggNOG-mapper	UHGV-0028848_49	1128111.HMPREF0870_00983	119.0	1.56e-31	N/A	N/A
Pfam	UHGV-0028848_49	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0028848_49	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0028848_49	PF06114,MF_00745,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0028848_51	phrog_2329	65.0	8.5e-19	N/A	unknown function
UniRef90	UHGV-0028848_51	UniRef90_UPI0018AB79C1	58.9	0.000000000249	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
structural_annotation	UHGV-0028848_51	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028848_53	1414720.CBYM010000071_gene3375	55.5	0.000000556	Helix-turn-helix domain of resolvase	N/A
Pfam	UHGV-0028848_53	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
KOfam	UHGV-0028848_55	K01448	110.0	2.5e-32	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0028848_55	phrog_435	183.1	0	endolysin	lysis
UniRef90	UHGV-0028848_55	UniRef90_A0A3A9F2U0	241.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0028848_55	1408823.AXUS01000024_gene2741	179.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0028848_55	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0028848_55	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0028848_55	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0028848_55	PF01520,PF05036,MF_02022,MF_00562,TIGR02883,COG0860,COG3147	N/A	N/A	N/A	N/A
PHROG	UHGV-0028848_58	phrog_1330	72.1	5.1e-21	tail protein	tail
eggNOG-mapper	UHGV-0028848_58	1415775.U729_3142	260.0	0	N/A	N/A
COG	UHGV-0028848_58	COG4926	N/A	N/A	Phage-related protein	N/A