UHGV-0029139 (vOTU-166919)

Viral Genome: UHGV-0029139

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0029139
vOTU ID	vOTU-166919
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_N_23_1309__NODE_2264_length_25978_cov_31.669511
Associated BioSample	SAMEA4765760
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.54 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9722
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37
Jumbo phage	No

Genome content
Genome length (bp)	25,978
GC content	29.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	90%
Average CDS length (bps)	456.53
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0029139_1	phrog_24267	78.0	1.5e-22	N/A	unknown function
UniRef90	UHGV-0029139_1	UniRef90_A0A7Y0HTM8	59.3	0.000000000824	Baseplate structural protein Gp10	N/A
eggNOG-mapper	UHGV-0029139_1	873448.STRPO_0075	88.2	2.2e-19	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0029139_1	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0029139_5	phrog_1129	83.1	1.9e-24	holin	lysis
UniRef90	UHGV-0029139_5	UniRef90_W6RX80	110.0	4.98e-30	Putative membrane protein	N/A
eggNOG-mapper	UHGV-0029139_5	1216932.CM240_1835	110.0	8.35e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0029139_5	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0029139_5	PF16079	N/A	N/A	N/A	N/A
KOfam	UHGV-0029139_6	K01447	122.1	5.5e-36	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0029139_6	phrog_670	139.1	3.30006e-41	endolysin	lysis
UniRef90	UHGV-0029139_6	UniRef90_A0A1C6KP52	250.0	0	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
eggNOG-mapper	UHGV-0029139_6	431943.CKL_1926	222.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0029139_6	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0029139_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0029139_6	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0029139_6	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0029139_9	K06400	321.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0029139_9	phrog_95	329.8	0	integrase	integration and excision
UniRef90	UHGV-0029139_9	UniRef90_A0A174D9S1	555.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0029139_9	1415774.U728_786	403.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0029139_9	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0029139_9	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0029139_9	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0029139_9	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0029139_9	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0029139_10	K07729	66.5	4.7e-19	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0029139_10	phrog_8	77.0	3.2e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0029139_10	UniRef90_UPI000540A180	106.0	1.5e-27	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0029139_10	1415774.U728_785	106.0	2.51e-28	sequence-specific DNA binding	N/A
PADLOC	UHGV-0029139_10	retron_type_VI_hth_cluster2_1	50.2	0.000000000000021	N/A	Retron
Pfam	UHGV-0029139_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0029139_10	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0029139_10	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0029139_11	K22299	42.8	0.0000000000099	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0029139_11	UniRef90_A0A8E1RDN9	62.8	0.0000000000429	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0029139_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0029139_11	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0029139_13	phrog_463	98.6	7.1e-29	anti-repressor	transcription regulation
UniRef90	UHGV-0029139_13	UniRef90_UPI001655EF17	220.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0029139_13	1292035.H476_1035	206.0	0	Phage regulatory protein	N/A
Pfam	UHGV-0029139_13	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0029139_13	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
KOfam	UHGV-0029139_17	K06284	112.8	2e-33	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0029139_17	phrog_4681	103.3	8.3e-31	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0029139_17	UniRef90_UPI001E37D272	114.0	9.39e-32	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0029139_17	1443122.Z958_p0017	113.0	4.51e-32	AbrB family	N/A
Pfam	UHGV-0029139_17	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0029139_17	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0029139_17	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0029139_17	PF04014,TIGR01439,COG2002	N/A	N/A	N/A	N/A
Pfam	UHGV-0029139_18	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
PHROG	UHGV-0029139_20	phrog_21026	58.9	8.2e-17	N/A	unknown function
structural_annotation	UHGV-0029139_20	NF037951	N/A	N/A	N/A	N/A
PHROG	UHGV-0029139_22	phrog_253	156.4	0	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029139_22	UniRef90_UPI001C8BB0F6	152.0	3.92364e-44	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0029139_22	536232.CLM_2568	129.0	3.83e-36	Siphovirus Gp157	N/A
Pfam	UHGV-0029139_22	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0029139_22	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0029139_23	phrog_2324	98.1	6.4e-29	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029139_23	UniRef90_A0A2I6SDI8	307.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0029139_23	1415774.U728_771	298.0	0	ERF superfamily	N/A
Pfam	UHGV-0029139_23	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0029139_23	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0029139_25	phrog_25754	109.4	9.8e-33	N/A	unknown function
eggNOG-mapper	UHGV-0029139_25	1196322.A370_02055	100.0	4.04e-27	N/A	N/A
structural_annotation	UHGV-0029139_25	PF18195,MF_00257,NF041655,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-0029139_26	phrog_5708	251.9	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029139_26	UniRef90_A0A1L3NDR9	222.0	0	Putative phage replication initiation protein	N/A
eggNOG-mapper	UHGV-0029139_26	632245.CLP_2716	209.0	0	DnaD domain protein	N/A
COG	UHGV-0029139_26	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0029139_26	PF09681,TIGR01714	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029139_27	PF20111,TIGR00686	N/A	N/A	N/A	N/A
KOfam	UHGV-0029139_28	K02315	191.8	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0029139_28	phrog_50	191.4	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029139_28	UniRef90_R9BZN9	267.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0029139_28	272562.CA_C1933	229.0	0	DNA replication protein	N/A
Pfam	UHGV-0029139_28	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0029139_28	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0029139_28	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0029139_28	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0029139_30	phrog_236	99.7	4e-29	nucleotide kinase	other
UniRef90	UHGV-0029139_30	UniRef90_UPI001C8D5B5A	85.1	1.03e-17	N/A	N/A
eggNOG-mapper	UHGV-0029139_30	1033743.CAES01000020_gene3148	108.0	1.8e-28	N/A	N/A
Pfam	UHGV-0029139_30	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0029139_32	K03111	113.7	2.6e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0029139_32	phrog_44	117.6	1.1e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029139_32	UniRef90_A0A6B4JHN5	138.0	1.69e-39	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0029139_32	536233.CLO_0510	138.0	2.83001e-40	Single-strand binding protein family	N/A
Pfam	UHGV-0029139_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0029139_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0029139_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0029139_32	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0029139_32	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0029139_37	phrog_190	141.3	4.99983e-42	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029139_37	UniRef90_A0A7X9XP27	226.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029139_37	1280689.AUJC01000003_gene945	216.0	0	N/A	N/A
Pfam	UHGV-0029139_37	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0029139_37	PF06356,MF_04160,NF033179,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0029139_38	phrog_173	112.5	3.7e-33	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029139_38	UniRef90_A0A2T0BNV0	122.0	2.44e-32	dUTPase	N/A
eggNOG-mapper	UHGV-0029139_38	235909.GK0515	87.4	1.08e-19	dUTPase	N/A
Pfam	UHGV-0029139_38	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0029139_38	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0029139_38	PF08761,COG4508	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029139_40	UniRef90_UPI001F30423C	156.0	5.60519e-45	thymidylate synthase ThyX	N/A
eggNOG-mapper	UHGV-0029139_40	935948.KE386495_gene2250	130.0	7.1e-36	N/A	N/A
Pfam	UHGV-0029139_40	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0029139_40	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
COG	UHGV-0029139_41	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
PHROG	UHGV-0029139_42	phrog_36	45.0	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0029139_42	UniRef90_UPI000C072B35	79.7	0.00000000000000144	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0029139_42	1033737.CAEV01000076_gene525	81.3	6.35e-17	N/A	N/A
structural_annotation	UHGV-0029139_42	PF08281,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0029139_44	phrog_6775	69.5	2.8e-20	N/A	unknown function
AcrCatalog	UHGV-0029139_44	cluster_37489	85.5	1.51e-23	NA	N/A
PHROG	UHGV-0029139_46	phrog_2277	69.7	2.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0029139_46	999411.HMPREF1092_03191	56.2	0.000000000526	N/A	N/A
PHROG	UHGV-0029139_48	phrog_2538	92.1	4.4e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0029139_48	UniRef90_A0A1C6CU48	87.4	2.51e-19	HTH_Tnp_1_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0029139_48	1415774.U728_1096	78.6	1.12e-16	N/A	N/A
Pfam	UHGV-0029139_48	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
structural_annotation	UHGV-0029139_48	PF13022,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-0029139_49	phrog_7168	93.4	2.9e-27	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029139_49	UniRef90_UPI0013713B4D	241.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0029139_49	1280692.AUJL01000004_gene859	231.0	0	GIY-YIG type nucleases (URI domain)	N/A
PADLOC	UHGV-0029139_49	HEase_00030	72.3	1.9e-20	homing endonuclease	RM
Pfam	UHGV-0029139_49	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-0029139_49	PF19835,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0029139_50	phrog_38	173.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0029139_50	UniRef90_A0A0C1R0Y0	453.0	0	Putative 6-phospho-beta-glucosidase BglA	N/A
eggNOG-mapper	UHGV-0029139_50	333138.LQ50_07930	416.0	0	TIGRFAM Phage	N/A
COG	UHGV-0029139_50	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0029139_50	PF17289,PF03354,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A