UHGV-0029239 (vOTU-034093)

Viral Genome: UHGV-0029239

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0029239
vOTU ID	vOTU-034093
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_G_3_2391__NODE_1308_length_42306_cov_5.169173
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	72.23 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9815
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.89
Jumbo phage	No

Genome content
Genome length (bp)	42,306
GC content	53.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	94%
Average CDS length (bps)	608.72
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0029239_1	UniRef90_A0A3D3Y046	221.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0029239_1	619693.HMPREF6745_2514	91.7	4.98e-21	N/A	N/A
COG	UHGV-0029239_1	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
KOfam	UHGV-0029239_2	K21527	103.1	3.1e-30	mom; adenine modification enzyme [EC:2.3.1.-]	N/A
PHROG	UHGV-0029239_2	phrog_1384	98.7	5.9e-29	Mom-like DNA modification protein	other
UniRef90	UHGV-0029239_2	UniRef90_A0A2X7G8Q7	81.6	3.25e-17	DNA modification protein	N/A
eggNOG-mapper	UHGV-0029239_2	619693.HMPREF6745_2515	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029239_3	756272.Plabr_1461	115.0	8.48e-31	N/A	N/A
KOfam	UHGV-0029239_5	K06909	145.1	5.70328e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0029239_5	phrog_2	170.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0029239_5	UniRef90_A0A3D3Y0N9	622.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0029239_5	1226322.HMPREF1545_00043	546.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0029239_5	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0029239_5	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0029239_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0029239_5	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_6	phrog_64	156.1	0	portal protein	head and packaging
UniRef90	UHGV-0029239_6	UniRef90_UPI0018A8A301	588.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0029239_6	1235800.C819_02239	79.0	0.000000000000718	phage portal protein, SPP1	N/A
Pfam	UHGV-0029239_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0029239_6	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_7	phrog_115	124.4	5.2e-37	minor head protein	head and packaging
UniRef90	UHGV-0029239_7	UniRef90_A0A810PSD3	451.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0029239_7	1504822.CCNO01000013_gene286	168.0	5.61921e-43	cell adhesion	N/A
Pfam	UHGV-0029239_7	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0029239_7	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029239_7	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_8	phrog_5	77.7	1.5e-22	tail completion or Neck1 protein	connector
UniRef90	UHGV-0029239_8	UniRef90_A0A4D7AJK9	177.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0029239_8	1280685.AUKC01000004_gene1630	115.0	2.9e-31	N/A	N/A
Pfam	UHGV-0029239_8	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0029239_8	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0029239_8	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029239_9	UniRef90_A0A174AAF6	57.0	0.0000012	Clp R domain-containing protein	N/A
structural_annotation	UHGV-0029239_9	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_10	phrog_544	115.9	2.8e-34	major head protein	head and packaging
UniRef90	UHGV-0029239_10	UniRef90_A0A1C6B5R0	438.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0029239_10	1232453.BAIF02000011_gene3359	324.0	0	N/A	N/A
Pfam	UHGV-0029239_10	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0029239_10	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_12	phrog_17977	74.9	7.1e-22	N/A	unknown function
UniRef90	UHGV-0029239_12	UniRef90_A0A285PT57	104.0	1.36e-26	Phage head-tail joining protein	N/A
structural_annotation	UHGV-0029239_12	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029239_13	UniRef90_A0A415JI88	129.0	3.68e-36	N/A	N/A
structural_annotation	UHGV-0029239_13	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_14	phrog_885	82.9	3.2e-24	major tail protein	tail
UniRef90	UHGV-0029239_14	UniRef90_A0A843J9F0	225.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0029239_14	1504822.CCNO01000012_gene492	254.0	0	N/A	N/A
structural_annotation	UHGV-0029239_14	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_17	phrog_6900	255.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0029239_17	1499683.CCFF01000017_gene2565	294.0	0	tape measure	N/A
COG	UHGV-0029239_17	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_18	phrog_33	43.4	0.0000000000044	distal tail protein Dit	tail
UniRef90	UHGV-0029239_18	UniRef90_A0A2T0BKY2	59.3	0.000000696	Phage tail protein	N/A
eggNOG-mapper	UHGV-0029239_18	1262449.CP6013_2095	70.1	0.0000000000172	tail component	N/A
COG	UHGV-0029239_18	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0029239_18	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_19	phrog_1067	120.1	2.1e-35	minor head protein	head and packaging
UniRef90	UHGV-0029239_19	UniRef90_A0A890GYC9	135.0	1.52e-31	Phage tail protein	N/A
eggNOG-mapper	UHGV-0029239_19	1123263.AUKY01000068_gene489	135.0	1.4e-32	Phage minor structural protein	N/A
Pfam	UHGV-0029239_19	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0029239_19	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0029239_19	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0029239_19	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
COG	UHGV-0029239_21	COG1413	N/A	N/A	HEAT repeat	N/A
structural_annotation	UHGV-0029239_21	PF17005,MF_01282,NF000096,COG4257	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_24	phrog_4105	51.7	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0029239_24	1235798.C817_02564	48.5	0.00000455	N/A	N/A
KOfam	UHGV-0029239_25	K01448	51.4	0.0000000000000092	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0029239_25	phrog_435	65.8	7.6e-20	endolysin	lysis
UniRef90	UHGV-0029239_25	UniRef90_A0A810PUG7	206.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0029239_25	1384066.JAGT01000001_gene130	76.6	0.00000000000011	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0029239_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0029239_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0029239_25	PF01520,PF01471,MF_00562,TIGR02883,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_26	phrog_881	84.6	5.7e-25	holin	lysis
UniRef90	UHGV-0029239_26	UniRef90_UPI001D0692FC	109.0	4.22e-30	phage holin	N/A
eggNOG-mapper	UHGV-0029239_26	742740.HMPREF9474_02251	107.0	5.36e-30	Putative phage holin Dp-1	N/A
Pfam	UHGV-0029239_26	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0029239_26	PF16938	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029239_27	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029239_30	UniRef90_A0A843GWV6	87.0	3.6e-20	Rubrerythrin domain-containing protein	N/A
eggNOG-mapper	UHGV-0029239_31	1226322.HMPREF1545_00079	93.6	2.83e-23	N/A	N/A
KOfam	UHGV-0029239_32	K14059	129.5	4.4e-38	int; integrase	N/A
PHROG	UHGV-0029239_32	phrog_1	159.2	0	integrase	integration and excision
UniRef90	UHGV-0029239_32	UniRef90_A0A810Q0Y2	405.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0029239_32	693746.OBV_43340	365.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0029239_32	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0029239_32	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0029239_32	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029239_33	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029239_38	UniRef90_A0A354UTE4	116.0	6.48e-31	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0029239_38	748224.HMPREF9436_01444	88.6	1.31e-20	N/A	N/A
Pfam	UHGV-0029239_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0029239_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0029239_38	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0029239_42	1235835.C814_03153	62.4	0.00000000000344	N/A	N/A
structural_annotation	UHGV-0029239_42	PF09035,TIGR01764	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029239_43	PF19885	N/A	N/A	N/A	N/A
KOfam	UHGV-0029239_44	K03546	45.0	0.00000000000051	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0029239_44	phrog_1499	297.9	0	N/A	unknown function
UniRef90	UHGV-0029239_44	UniRef90_UPI0011819106	565.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0029239_44	1007096.BAGW01000023_gene155	565.0	0	DNA recombination	N/A
Pfam	UHGV-0029239_44	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0029239_44	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-0029239_44	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_45	phrog_21613	96.4	2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0029239_45	1120998.AUFC01000030_gene2214	127.0	1.04e-34	N/A	N/A
PHROG	UHGV-0029239_46	phrog_1227	241.6	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029239_46	UniRef90_UPI0003092B20	319.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0029239_46	1007096.BAGW01000023_gene152	319.0	0	N/A	N/A
Pfam	UHGV-0029239_46	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0029239_46	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0029239_46	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_47	phrog_8841	472.2	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029239_47	UniRef90_UPI00164DBC57	659.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029239_47	742738.HMPREF9460_02495	645.0	0	N/A	N/A
Pfam	UHGV-0029239_47	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0029239_47	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0029239_47	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029239_47	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0029239_48	K17677	386.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0029239_48	phrog_16	235.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029239_48	UniRef90_A0A2U1BEG6	713.0	0	Superfamily II DNA or RNA helicase	N/A
eggNOG-mapper	UHGV-0029239_48	742738.HMPREF9460_02499	700.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0029239_48	mREase_IV_00005	110.4	9.7e-33	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0029239_48	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0029239_48	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0029239_48	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0029239_48	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_49	phrog_824	117.1	8.8e-35	N/A	unknown function
UniRef90	UHGV-0029239_49	UniRef90_A0A2U1BEL4	170.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0029239_49	742738.HMPREF9460_02501	163.0	0	VRR_NUC	N/A
Pfam	UHGV-0029239_49	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0029239_49	PF08774	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029239_51	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
Pfam	UHGV-0029239_53	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0029239_53	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_54	phrog_954	196.2	0	DNA methyltransferase	other
UniRef90	UHGV-0029239_54	UniRef90_A0A810Q0N4	304.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0029239_54	411461.DORFOR_01143	276.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0029239_54	MTase_II_00074	199.9	0	Type II methyltransferase	RM
Pfam	UHGV-0029239_54	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0029239_54	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0029239_54	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_55	phrog_38832	101.3	3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0029239_55	665956.HMPREF1032_03087	106.0	2.8e-27	N/A	N/A
structural_annotation	UHGV-0029239_55	PF18300	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_61	phrog_355	59.3	5.9e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029239_61	UniRef90_A0A3R6IMQ7	109.0	3.27e-28	N/A	N/A
eggNOG-mapper	UHGV-0029239_61	397290.C810_05229	66.2	0.00000000000377	N/A	N/A
Pfam	UHGV-0029239_61	PF14359	N/A	N/A	N/A	DUF4406
PHROG	UHGV-0029239_62	phrog_2245	95.2	6.1e-28	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0029239_62	UniRef90_A0A4U9RLZ8	69.7	0.000000000000197	N/A	N/A
eggNOG-mapper	UHGV-0029239_62	293826.Amet_2596	75.5	9.75e-16	N/A	N/A
structural_annotation	UHGV-0029239_62	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0029239_64	phrog_36	61.1	1.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0029239_64	UniRef90_UPI001D0837DD	144.0	2.09999e-41	N/A	N/A
eggNOG-mapper	UHGV-0029239_64	580331.Thit_1400	95.9	2.76e-23	N/A	N/A
structural_annotation	UHGV-0029239_64	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0029239_65	K03497	55.3	0.0000000000000017	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0029239_65	phrog_620	105.0	7.6e-31	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029239_65	UniRef90_A0A843HME1	104.0	1.55e-26	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0029239_65	938293.CAJU020000007_gene2105	92.4	7.75e-21	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0029239_65	MTase_II_00015	67.9	2.2e-19	Type II methyltransferase	RM
Pfam	UHGV-0029239_65	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0029239_65	COG0863	N/A	N/A	DNA modification methylase	N/A