UHGV-0029374 (vOTU-119381)

Viral Genome: UHGV-0029374

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0029374
vOTU ID	vOTU-119381
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_K_9_2483__NODE_3986_length_27318_cov_6.510150
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.2 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9818
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.51
Jumbo phage	No

Genome content
Genome length (bp)	27,318
GC content	36.24%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	95%
Average CDS length (bps)	635.85
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0029374_2	phrog_1863	62.1	1.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0029374_2	693746.OBV_18260	65.5	0.000000000000553	N/A	N/A
PHROG	UHGV-0029374_3	phrog_443	59.6	7.7e-17	holin	lysis
UniRef90	UHGV-0029374_3	UniRef90_UPI001C0212A6	92.0	6.31e-23	holin	N/A
eggNOG-mapper	UHGV-0029374_3	1235802.C823_05612	89.4	1.37e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0029374_3	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0029374_3	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0029374_4	K21471	51.4	0.0000000000000053	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0029374_4	phrog_3393	60.3	4.1e-17	endolysin	lysis
UniRef90	UHGV-0029374_4	UniRef90_A0A3E4LXG7	484.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0029374_4	665950.HMPREF1025_02511	177.0	0	Ami_2	N/A
Pfam	UHGV-0029374_4	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0029374_4	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0029374_4	PF05382,NF033743,COG5492,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0029374_5	phrog_64	116.2	2e-34	portal protein	head and packaging
UniRef90	UHGV-0029374_5	UniRef90_A0A843GSM3	350.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0029374_5	1443122.Z958_p0036	129.0	1.36e-29	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0029374_5	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0029374_5	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0029374_6	phrog_1657	194.8	0	head morphogenesis	head and packaging
UniRef90	UHGV-0029374_6	UniRef90_A0A1G9U003	146.0	6.12e-38	Phage Mu protein F like protein	N/A
eggNOG-mapper	UHGV-0029374_6	1582149.A0A0A8WEF5_9CAUD	143.0	3.29e-36	Phage Mu protein F like protein	N/A
structural_annotation	UHGV-0029374_8	TIGR00310	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0029374_9	1231057.AMGD01000018_gene3620	52.8	0.00000894	N/A	N/A
structural_annotation	UHGV-0029374_9	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0029374_10	phrog_909	73.9	1.6e-21	major head protein	head and packaging
eggNOG-mapper	UHGV-0029374_10	1158612.I580_01911	70.9	0.00000000000006	N/A	N/A
structural_annotation	UHGV-0029374_10	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0029374_11	phrog_29	247.4	0	major head protein	head and packaging
UniRef90	UHGV-0029374_11	UniRef90_UPI00082C04A5	421.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0029374_11	1158612.I580_01912	319.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0029374_11	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0029374_11	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029374_12	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0029374_13	phrog_4020	70.6	1.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0029374_13	748727.CLJU_c31290	68.2	0.0000000000000632	N/A	N/A
PHROG	UHGV-0029374_14	phrog_8435	46.2	0.00000000000059	N/A	unknown function
structural_annotation	UHGV-0029374_14	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029374_15	UniRef90_UPI00164BA869	81.3	1.49e-17	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0029374_15	1443122.Z958_05860	92.0	1.46e-22	N/A	N/A
Pfam	UHGV-0029374_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0029374_15	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0029374_16	phrog_7585	68.0	1.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0029374_16	1196322.A370_04060	62.0	0.000000000147	N/A	N/A
structural_annotation	UHGV-0029374_16	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0029374_17	phrog_6686	135.8	2.5e-40	tail tube protein	tail
UniRef90	UHGV-0029374_17	UniRef90_A0A1C6KI12	169.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0029374_17	748727.CLJU_c31250	100.0	8.63e-23	N/A	N/A
structural_annotation	UHGV-0029374_17	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0029374_18	phrog_6280	129.8	1.2e-38	N/A	unknown function
UniRef90	UHGV-0029374_18	UniRef90_UPI001AA892DF	109.0	5.31e-28	esterase	N/A
eggNOG-mapper	UHGV-0029374_18	1443125.Z962_12410	109.0	9.7e-29	N/A	N/A
PHROG	UHGV-0029374_19	phrog_19074	527.9	0	N/A	unknown function
UniRef90	UHGV-0029374_19	UniRef90_A0A352TM73	452.0	0	Phage tail tape measure protein (Fragment)	N/A
eggNOG-mapper	UHGV-0029374_19	1410670.JHXF01000015_gene2302	463.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0029374_19	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0029374_19	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0029374_19	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0029374_19	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0029374_20	phrog_36410	49.4	0.000000000000007	N/A	unknown function
UniRef90	UHGV-0029374_20	UniRef90_A0A3A9SB17	85.1	0.00000000000000251	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0029374_20	431943.CKL_4056	66.6	0.00000000113	Phage tail protein	N/A
COG	UHGV-0029374_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0029374_20	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0029374_21	phrog_538	145.2	3.9937e-43	minor tail protein	tail
UniRef90	UHGV-0029374_21	UniRef90_A0A843GTT7	140.0	2.39e-34	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0029374_21	742740.HMPREF9474_02260	125.0	1.16e-29	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0029374_21	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0029374_21	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0029374_22	phrog_1220	155.6	0	head protein	head and packaging
eggNOG-mapper	UHGV-0029374_22	755731.Clo1100_0558	120.0	6.97e-28	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0029374_23	phrog_36	48.7	0.00000000000016	transcriptional regulator	transcription regulation
Pfam	UHGV-0029374_23	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0029374_23	PF04545,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0029374_24	445972.ANACOL_01878	57.8	0.00000001	N/A	N/A
PHROG	UHGV-0029374_26	phrog_16490	98.5	3.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0029374_26	397290.C810_01328	120.0	7.6e-30	N/A	N/A
structural_annotation	UHGV-0029374_28	PF00210,NF007638,COG1528	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029374_29	PF01649	N/A	N/A	N/A	N/A
PHROG	UHGV-0029374_31	phrog_3754	86.8	2.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0029374_31	397290.C810_05204	79.7	1.97e-17	N/A	N/A
structural_annotation	UHGV-0029374_35	PF06003,MF_01077,NF037951,COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-0029374_37	K02316	121.0	9e-36	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0029374_37	phrog_47	137.6	1.10001e-40	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029374_37	UniRef90_A0A843GN62	299.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0029374_37	1121440.AUMA01000006_gene1676	67.4	0.00000000145	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-0029374_37	drt-UG29	42.9	3.9e-24	DRT	DRT
Pfam	UHGV-0029374_37	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0029374_37	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0029374_37	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0029374_37	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029374_39	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-0029374_41	K02337	490.1	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0029374_41	phrog_405	458.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029374_41	UniRef90_A0A843GPT9	562.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0029374_41	1123325.JHUV01000015_gene245	303.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0029374_41	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0029374_41	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
COG	UHGV-0029374_41	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0029374_41	PF07733,PF02811,MF_01902,NF005298,COG0587	N/A	N/A	N/A	N/A