UHGV-0029979 (vOTU-008235)

Viral Genome: UHGV-0029979

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0029979
vOTU ID	vOTU-008235
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_K_6_2620__NODE_1453_length_43505_cov_14.998480
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9789
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.75
Jumbo phage	No

Genome content
Genome length (bp)	43,505
GC content	36.65%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	72
CDS density	90%
Average CDS length (bps)	543.96
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0029979_1	phrog_16490	71.6	1.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0029979_1	476272.RUMHYD_01770	81.3	3.81e-16	N/A	N/A
PHROG	UHGV-0029979_2	phrog_22984	53.8	0.0000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0029979_4	1120971.AUCA01000043_gene1174	51.2	0.00000302	sigma factor activity	N/A
Pfam	UHGV-0029979_4	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0029979_4	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0029979_4	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_5	phrog_881	66.4	2.9e-19	holin	lysis
UniRef90	UHGV-0029979_5	UniRef90_UPI000F794652	62.4	0.0000000000213	holin	N/A
eggNOG-mapper	UHGV-0029979_5	59241.E7DNC2_BPDP1	60.5	0.0000000000245	Pfam:Phage_holin_Dp1	N/A
Pfam	UHGV-0029979_5	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0029979_5	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_6	phrog_4105	91.0	8.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0029979_6	428125.CLOLEP_01431	85.9	2.52e-20	N/A	N/A
PHROG	UHGV-0029979_7	phrog_14030	178.3	0	N/A	unknown function
UniRef90	UHGV-0029979_7	UniRef90_UPI00098CDFD1	196.0	0	NlpC/P60 family protein	N/A
eggNOG-mapper	UHGV-0029979_7	641107.CDLVIII_3774	196.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-0029979_7	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0029979_7	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
NCBIFam	UHGV-0029979_8	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0029979_8	NF040910	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029979_9	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_10	phrog_372	202.2	0	tail protein	tail
UniRef90	UHGV-0029979_10	UniRef90_A0A3N0HXV0	199.0	0	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0029979_10	1235802.C823_05263	162.0	8.70999e-40	N/A	N/A
Pfam	UHGV-0029979_10	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0029979_10	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0029979_10	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
KOfam	UHGV-0029979_11	K19719	110.8	1.9e-33	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0029979_11	phrog_1067	300.1	0	minor head protein	head and packaging
UniRef90	UHGV-0029979_11	UniRef90_UPI000E415377	176.0	7.62993e-41	collagen-like protein	N/A
eggNOG-mapper	UHGV-0029979_11	1123263.AUKY01000068_gene489	327.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0029979_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0029979_11	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
NCBIFam	UHGV-0029979_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0029979_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0029979_11	PF14594,PF00629,TIGR01665,NF033675,COG4926,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_12	phrog_33	63.4	5.4e-18	distal tail protein Dit	tail
UniRef90	UHGV-0029979_12	UniRef90_A0A1C6H6D2	139.0	7.14e-37	Phage-related protein	N/A
eggNOG-mapper	UHGV-0029979_12	1123263.AUKY01000068_gene490	189.0	0	tail component	N/A
COG	UHGV-0029979_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0029979_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0029979_13	K20282	63.0	1e-18	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0029979_13	phrog_1533	331.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0029979_13	UniRef90_A0A174LG45	231.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0029979_13	1235799.C818_04231	203.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0029979_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0029979_13	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0029979_13	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0029979_13	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_15	phrog_88	134.7	5.4e-40	major tail protein	tail
UniRef90	UHGV-0029979_15	UniRef90_A6M958	119.0	1.9e-30	Putative major capsid protein	N/A
eggNOG-mapper	UHGV-0029979_15	447909.A6M958_9VIRU	119.0	3.19e-31	N/A	N/A
Pfam	UHGV-0029979_15	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0029979_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0029979_15	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_19	phrog_749	57.0	2.1e-16	N/A	unknown function
UniRef90	UHGV-0029979_19	UniRef90_A0A396SIZ8	58.9	0.00000000493	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0029979_19	86416.Clopa_0342	63.9	0.0000000000102	N/A	N/A
PHROG	UHGV-0029979_20	phrog_10	112.9	2.9e-33	major head protein	head and packaging
UniRef90	UHGV-0029979_20	UniRef90_A0A0F3FRY7	256.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0029979_20	864178.E2ELI5_9CAUD	248.0	0	peptidase activity	N/A
Pfam	UHGV-0029979_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0029979_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0029979_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0029979_21	K01358	130.6	1.6e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0029979_21	phrog_94	219.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0029979_21	UniRef90_UPI001E29EFE6	169.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0029979_21	1403313.AXBR01000002_gene4326	158.0	2.66247e-44	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0029979_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0029979_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0029979_21	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_22	phrog_12	63.5	1.9e-19	portal protein	head and packaging
UniRef90	UHGV-0029979_22	UniRef90_UPI0001668EB1	200.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0029979_22	1415774.U728_1254	184.0	0	Phage portal protein	N/A
Pfam	UHGV-0029979_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0029979_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0029979_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_23	phrog_9	264.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0029979_23	UniRef90_W0FKV6	499.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0029979_23	1235792.C808_00083	465.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0029979_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0029979_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0029979_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0029979_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-0029979_25	K07451	48.6	0.00000000000013	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0029979_25	phrog_119	71.7	9.3e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029979_25	UniRef90_R5TPY3	73.6	0.0000000000000185	Phage related protein	N/A
eggNOG-mapper	UHGV-0029979_25	1235792.C808_00081	72.4	0.00000000000000898	HNH nucleases	N/A
COG	UHGV-0029979_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0029979_27	PF08962	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0029979_30	411473.RUMCAL_00313	84.7	5.31e-20	N/A	N/A
structural_annotation	UHGV-0029979_30	PF18358,NF037951	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_32	phrog_19458	296.8	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029979_32	UniRef90_A0A1V5KAU2	216.0	0	DarA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0029979_32	657322.FPR_26770	288.0	0	N/A	N/A
COG	UHGV-0029979_32	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
PHROG	UHGV-0029979_36	phrog_1281	145.3	1.90577e-43	N/A	unknown function
UniRef90	UHGV-0029979_36	UniRef90_A0A843ILR3	148.0	2.7003e-42	N/A	N/A
eggNOG-mapper	UHGV-0029979_36	1282887.AUJG01000021_gene2182	145.0	8.78054e-42	N/A	N/A
Pfam	UHGV-0029979_36	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0029979_36	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029979_36	PF13274,COG3600	N/A	N/A	N/A	N/A
KOfam	UHGV-0029979_37	K07171	43.2	0.0000000000085	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0029979_37	phrog_1936	42.2	0.000000000014	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0029979_37	UniRef90_UPI0013DF8249	81.3	7.67e-18	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0029979_37	706434.HMPREF9429_00535	73.9	9.88e-16	PemK-like, MazF-like toxin of type II toxin-antitoxin system	N/A
Pfam	UHGV-0029979_37	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
structural_annotation	UHGV-0029979_37	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_38	phrog_3675	102.1	2.7e-30	N/A	unknown function
UniRef90	UHGV-0029979_38	UniRef90_UPI001C0C006D	110.0	3.05e-29	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0029979_38	585501.HMPREF6123_0838	100.0	4.58e-26	YjcQ protein	N/A
Pfam	UHGV-0029979_38	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0029979_38	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_39	phrog_3675	111.3	3.7e-33	N/A	unknown function
UniRef90	UHGV-0029979_39	UniRef90_U2JT34	120.0	3.1e-33	YjcQ protein	N/A
eggNOG-mapper	UHGV-0029979_39	1321784.HMPREF1987_01070	120.0	5.21e-34	YjcQ protein	N/A
Pfam	UHGV-0029979_39	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0029979_39	PF09639,TIGR04176,COG1695	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029979_40	TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0029979_43	K03111	117.7	1.5e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0029979_43	phrog_44	133.7	1.2e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029979_43	UniRef90_UPI00189992A5	128.0	2.77e-35	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0029979_43	1278304.JAFR01000009_gene1227	122.0	1.16e-33	single-stranded DNA binding	N/A
Pfam	UHGV-0029979_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0029979_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0029979_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0029979_43	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0029979_43	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_46	phrog_478	97.0	1.2e-28	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0029979_46	UniRef90_A0A0J8Z1B9	164.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0029979_46	272623.L62008	74.7	0.00000000000000291	N/A	N/A
PHROG	UHGV-0029979_48	phrog_3878	46.3	0.00000000000075	N/A	unknown function
Pfam	UHGV-0029979_54	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
Pfam	UHGV-0029979_54	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
KOfam	UHGV-0029979_55	K04763	79.1	6.4e-23	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0029979_55	phrog_216	104.2	1e-30	integrase	integration and excision
UniRef90	UHGV-0029979_55	UniRef90_A0A890GUG4	186.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0029979_55	1123263.AUKY01000113_gene2072	166.0	0	Integrase	N/A
Pfam	UHGV-0029979_55	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0029979_55	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0029979_55	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_56	phrog_918	102.6	1.8e-30	N/A	unknown function
UniRef90	UHGV-0029979_56	UniRef90_UPI001D0B68F4	138.0	9.73006e-41	N/A	N/A
eggNOG-mapper	UHGV-0029979_56	411473.RUMCAL_00361	112.0	1.29e-31	N/A	N/A
Pfam	UHGV-0029979_56	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0029979_56	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0029979_61	K01520	76.9	3.1e-22	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0029979_61	phrog_135	97.8	8.9e-29	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029979_61	UniRef90_A0A380NKA2	118.0	1.16e-31	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0029979_61	1000569.HMPREF1040_0802	99.8	6.39e-25	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
Pfam	UHGV-0029979_61	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0029979_61	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0029979_61	PF00692,MF_00116,NF010561,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_62	phrog_5810	85.5	6.6e-25	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029979_62	UniRef90_A0A1A9KGQ6	84.3	0.00000000000000307	Phage replication protein	N/A
eggNOG-mapper	UHGV-0029979_62	411490.ANACAC_00800	156.0	2.158e-43	N/A	N/A
structural_annotation	UHGV-0029979_62	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-0029979_68	phrog_582	41.2	0.00000000003	Arc-like repressor	transcription regulation
Pfam	UHGV-0029979_68	PF05534	N/A	N/A	HicB family	HicB
Pfam	UHGV-0029979_69	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
structural_annotation	UHGV-0029979_69	PF03869,NF041793,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029979_70	UniRef90_UPI000E12259A	89.7	5.93e-22	N/A	N/A
eggNOG-mapper	UHGV-0029979_70	626523.GCWU000342_01049	65.5	0.000000000000291	N/A	N/A
Pfam	UHGV-0029979_70	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0029979_70	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0029979_70	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0029979_71	K22300	61.6	1.6e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0029979_71	phrog_8	79.6	2e-28	transcriptional regulator	transcription regulation
UniRef90	UHGV-0029979_71	UniRef90_UPI0005EA152C	99.4	1.49e-20	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0029979_71	360398.A0ZS08_9CAUD	85.9	5.21e-17	sequence-specific DNA binding	N/A
Pfam	UHGV-0029979_71	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0029979_71	PF01381,MF_00535,NF041951,NF007257,COG1396,COG1513	N/A	N/A	N/A	N/A
KOfam	UHGV-0029979_72	K14059	219.7	0	int; integrase	N/A
PHROG	UHGV-0029979_72	phrog_1	214.6	0	integrase	integration and excision
UniRef90	UHGV-0029979_72	UniRef90_UPI00041838CC	350.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0029979_72	1123263.AUKY01000012_gene1957	350.0	0	Pfam:Integrase_AP2	N/A
Pfam	UHGV-0029979_72	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0029979_72	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0029979_72	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0029979_72	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A