UHGV-0030059 (vOTU-126055)

Viral Genome: UHGV-0030059

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0030059
vOTU ID	vOTU-126055
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_12_2317__NODE_5054_length_23473_cov_396.358480
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.35 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9705
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.2
Jumbo phage	No

Genome content
Genome length (bp)	23,473
GC content	28.07%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	90%
Average CDS length (bps)	606.51
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0030059_2	K06909	68.2	9.1e-20	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0030059_2	phrog_2	80.2	4.2e-23	terminase large subunit	head and packaging
UniRef90	UHGV-0030059_2	UniRef90_S0JAW2	424.0	0	PBSX family phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0030059_2	1235790.C805_00040	424.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0030059_2	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0030059_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0030059_2	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0030059_3	K01160	46.8	0.00000000000069	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0030059_3	phrog_34	52.5	0.0000000000000096	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030059_3	UniRef90_A0A843HIU7	136.0	3.17e-39	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0030059_3	796940.HMPREF9628_00163	117.0	3.26e-32	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0030059_3	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0030059_3	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0030059_3	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_4	phrog_533	291.6	0	portal protein	head and packaging
UniRef90	UHGV-0030059_4	UniRef90_A0A843GW45	272.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0030059_4	1120998.AUFC01000030_gene2232	259.0	0	N/A	N/A
Pfam	UHGV-0030059_4	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0030059_4	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_5	phrog_2303	41.8	0.00000000001	head scaffolding protein	head and packaging
structural_annotation	UHGV-0030059_5	PF14265	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030059_6	UniRef90_A0A0M2NI16	289.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-0030059_6	PF05065,PF18316,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_8	phrog_541	52.9	0.0000000000000061	head-tail adaptor	connector
structural_annotation	UHGV-0030059_10	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_11	phrog_3266	61.8	9.5e-18	tail completion	connector
structural_annotation	UHGV-0030059_11	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_12	phrog_3099	67.6	1.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0030059_12	665956.HMPREF1032_03060	93.6	1.64e-21	N/A	N/A
structural_annotation	UHGV-0030059_12	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_13	phrog_11299	89.4	3.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0030059_13	1298920.KI911353_gene2067	55.8	0.000000144	N/A	N/A
structural_annotation	UHGV-0030059_13	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_14	phrog_706	96.0	4e-28	N/A	unknown function
UniRef90	UHGV-0030059_14	UniRef90_A0A173TZF2	151.0	4.9606e-43	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0030059_14	476272.RUMHYD_01784	132.0	2.04e-36	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0030059_14	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0030059_14	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_15	phrog_1535	127.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0030059_15	UniRef90_UPI001DBC5439	155.0	1.29e-35	PspA/IM30 family protein	N/A
eggNOG-mapper	UHGV-0030059_15	1280692.AUJL01000027_gene2150	103.0	6.34e-20	phage tail tape measure protein	N/A
COG	UHGV-0030059_15	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030059_15	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_16	phrog_1194	66.2	4.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0030059_16	1304866.K413DRAFT_3047	94.0	8.81e-23	N/A	N/A
Pfam	UHGV-0030059_16	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0030059_16	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_17	phrog_18190	155.4	0	N/A	unknown function
UniRef90	UHGV-0030059_17	UniRef90_UPI001D15C06A	89.4	0.00000000000000248	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0030059_17	483218.BACPEC_01143	90.5	1.68e-16	N/A	N/A
structural_annotation	UHGV-0030059_17	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030059_20	PF07041	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_21	phrog_15594	69.1	2.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0030059_21	1163671.JAGI01000002_gene1216	96.3	8.71e-19	Phage Tail Collar Domain	N/A
COG	UHGV-0030059_21	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0030059_22	PF07041	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_23	phrog_25979	46.5	0.00000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0030059_23	756282.M4SNB6_9CAUD	59.3	0.000000343	peptidoglycan catabolic process	N/A
KOfam	UHGV-0030059_24	K17256	52.1	0.0000000000000037	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	N/A
PHROG	UHGV-0030059_24	phrog_35892	96.8	1.1e-37	N/A	unknown function
Pfam	UHGV-0030059_24	PF13855	N/A	N/A	Leucine rich repeat	LRR_8
Pfam	UHGV-0030059_24	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
structural_annotation	UHGV-0030059_24	PF13306	N/A	N/A	N/A	N/A
KOfam	UHGV-0030059_27	K01448	63.6	2.7e-18	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0030059_27	phrog_435	87.4	2.1e-25	endolysin	lysis
UniRef90	UHGV-0030059_27	UniRef90_A0A351MWN4	178.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0030059_27	1341157.RF007C_06895	94.4	9.21e-21	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0030059_27	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0030059_27	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0030059_27	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0030059_27	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0030059_29	phrog_21718	66.2	5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0030059_29	1235790.C805_00058	73.9	0.0000000000000301	N/A	N/A
eggNOG-mapper	UHGV-0030059_30	658655.HMPREF0988_00918	47.4	0.00000788	N/A	N/A
eggNOG-mapper	UHGV-0030059_31	476272.RUMHYD_01770	100.0	4.91e-23	N/A	N/A
structural_annotation	UHGV-0030059_32	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030059_35	UniRef90_W1I3X2	79.7	3.82e-16	Uncultured bacterium plasmid pRGI01042	N/A