UHGV-0030409 (vOTU-018744)

Viral Genome: UHGV-0030409

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0030409
vOTU ID	vOTU-018744
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_8_1525__NODE_4711_length_24801_cov_18.277180
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.31 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.58
Jumbo phage	No

Genome content
Genome length (bp)	24,801
GC content	41.43%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	31
CDS density	97%
Average CDS length (bps)	772.07
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0030409_1	K02395	130.4	1.9e-38	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0030409_1	phrog_12727	198.4	0	endolysin	lysis
UniRef90	UHGV-0030409_1	UniRef90_A0A564TIN6	378.0	0	Exo-glucosaminidase LytG	N/A
eggNOG-mapper	UHGV-0030409_1	1235797.C816_02842	167.0	1.4013e-45	mannosyl-glycoprotein	N/A
Pfam	UHGV-0030409_1	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0030409_1	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0030409_1	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0030409_1	PF01832,PF05036,NF038016,COG1705	N/A	N/A	N/A	N/A
KOfam	UHGV-0030409_2	K01448	76.0	5.3e-22	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0030409_2	phrog_435	115.9	4.6e-34	endolysin	lysis
UniRef90	UHGV-0030409_2	UniRef90_A0A564TJ46	465.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0030409_2	999413.HMPREF1094_01993	149.0	8.19003e-41	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0030409_2	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0030409_2	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0030409_2	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0030409_3	phrog_36029	71.6	1.3e-20	N/A	unknown function
UniRef90	UHGV-0030409_3	UniRef90_UPI001C0110E8	119.0	1.37e-31	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0030409_3	411468.CLOSCI_01511	71.2	0.0000000000000478	N/A	N/A
structural_annotation	UHGV-0030409_3	PF09682	N/A	N/A	N/A	N/A
PHROG	UHGV-0030409_5	phrog_1863	44.0	0.000000000002	N/A	unknown function
UniRef90	UHGV-0030409_5	UniRef90_UPI001E345E1F	57.8	0.00000000349	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0030409_5	1226322.HMPREF1545_04027	52.0	0.0000000965	N/A	N/A
PHROG	UHGV-0030409_6	phrog_16573	54.0	9.4e-16	N/A	unknown function
UniRef90	UHGV-0030409_6	UniRef90_A0A355TLY9	174.0	1.87998e-41	SGNH_hydro domain-containing protein	N/A
eggNOG-mapper	UHGV-0030409_6	1160721.RBI_I01572	65.5	0.00000000703	N/A	N/A
Pfam	UHGV-0030409_6	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0030409_6	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
PHROG	UHGV-0030409_7	phrog_1067	351.1	0	minor head protein	head and packaging
UniRef90	UHGV-0030409_7	UniRef90_A0A3R6MRC7	397.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0030409_7	1280689.AUJC01000011_gene1532	343.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0030409_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0030409_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0030409_7	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0030409_8	phrog_33	96.0	6.3e-28	distal tail protein Dit	tail
UniRef90	UHGV-0030409_8	UniRef90_UPI000DD01D50	203.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0030409_8	1235798.C817_02569	190.0	0	tail component	N/A
Pfam	UHGV-0030409_8	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0030409_8	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0030409_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0030409_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0030409_9	phrog_1533	379.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0030409_9	UniRef90_A0A564TJF6	1287.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0030409_9	1235793.C809_01928	384.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0030409_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0030409_9	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0030409_9	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0030409_10	phrog_25901	84.2	2.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0030409_10	411459.RUMOBE_01726	78.2	4.06e-16	N/A	N/A
PHROG	UHGV-0030409_11	phrog_13494	79.1	6.86636e-44	N/A	unknown function
eggNOG-mapper	UHGV-0030409_11	195103.CPF_1578	68.6	0.00000000000244	N/A	N/A
PHROG	UHGV-0030409_12	phrog_88	123.7	1.2e-36	major tail protein	tail
UniRef90	UHGV-0030409_12	UniRef90_A0A412BAX6	315.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-0030409_12	411459.RUMOBE_01728	170.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0030409_12	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0030409_12	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030409_12	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0030409_13	phrog_78	75.8	5.5e-22	tail terminator	connector
UniRef90	UHGV-0030409_13	UniRef90_I2E8V8	84.0	2.72e-18	Gp10	N/A
eggNOG-mapper	UHGV-0030409_13	195103.CPF_1580	84.0	4.56e-19	N/A	N/A
structural_annotation	UHGV-0030409_13	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0030409_14	phrog_5	48.4	0.0000000000002	tail completion or Neck1 protein	connector
UniRef90	UHGV-0030409_14	UniRef90_UPI00164C40CD	114.0	7.77e-30	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0030409_14	195103.CPF_1581	89.7	7.86e-21	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0030409_14	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0030409_14	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0030409_15	phrog_25	49.0	0.0000000000001	head closure Hc1	connector
UniRef90	UHGV-0030409_15	UniRef90_A0A2N5PGW8	206.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0030409_15	411459.RUMOBE_01731	68.2	0.000000000000162	Phage head-tail adaptor	N/A
Pfam	UHGV-0030409_15	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0030409_15	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0030409_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0030409_16	phrog_40	42.3	0.0000000000092	head-tail adaptor Ad1	connector
UniRef90	UHGV-0030409_16	UniRef90_A0A564TJU2	189.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0030409_16	394503.Ccel_2955	86.7	6.06e-21	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0030409_16	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0030409_16	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0030409_16	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0030409_17	phrog_10	100.4	2.3e-29	major head protein	head and packaging
UniRef90	UHGV-0030409_17	UniRef90_A0A564TJU4	672.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0030409_17	903814.ELI_3113	294.0	0	Phage capsid family	N/A
Pfam	UHGV-0030409_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0030409_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0030409_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0030409_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0030409_18	K06904	155.7	0	N/A	N/A
PHROG	UHGV-0030409_18	phrog_80	153.9	1.4013e-45	head maturation protease	head and packaging
UniRef90	UHGV-0030409_18	UniRef90_A0A3E2TP58	415.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0030409_18	573061.Clocel_2438	239.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0030409_18	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0030409_18	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0030409_18	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0030409_18	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0030409_19	phrog_12	210.6	0	portal protein	head and packaging
UniRef90	UHGV-0030409_19	UniRef90_A0A3E2TP19	786.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0030409_19	903814.ELI_3115	414.0	0	Phage portal protein	N/A
Pfam	UHGV-0030409_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0030409_19	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0030409_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0030409_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0030409_21	phrog_9	352.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0030409_21	UniRef90_A0A3A9C975	1048.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0030409_21	903814.ELI_3117	694.0	0	Phage Terminase	N/A
Pfam	UHGV-0030409_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0030409_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0030409_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0030409_21	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0030409_22	phrog_83	108.9	4e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0030409_22	UniRef90_A0A564TK16	262.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0030409_22	903814.ELI_3118	142.0	4.16046e-42	Phage terminase, small subunit	N/A
Pfam	UHGV-0030409_22	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0030409_22	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0030409_22	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0030409_22	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0030409_23	phrog_144	70.9	1.9e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030409_23	UniRef90_E3GPG7	117.0	9.23e-31	Gp50 protein	N/A
eggNOG-mapper	UHGV-0030409_23	903814.ELI_3119	117.0	1.55e-31	HNH endonuclease	N/A
COG	UHGV-0030409_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0030409_25	PF15591,MF_00613,NF002745	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0030409_26	483218.BACPEC_01170	93.2	2.7e-22	N/A	N/A
KOfam	UHGV-0030409_27	K03497	67.6	1.1e-19	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0030409_27	phrog_15982	263.9	0	N/A	unknown function
UniRef90	UHGV-0030409_27	UniRef90_A0A3E2TNV3	812.0	0	N/A	N/A
eggNOG-mapper	UHGV-0030409_27	411470.RUMGNA_02052	336.0	0	N/A	N/A
Pfam	UHGV-0030409_27	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0030409_27	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-0030409_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0030409_27	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-0030409_30	K03496	200.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0030409_30	phrog_164	159.5	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030409_30	UniRef90_A0A564TKC8	460.0	0	Chromosome-partitioning ATPase Soj	N/A
eggNOG-mapper	UHGV-0030409_30	411468.CLOSCI_00306	218.0	0	AAA domain	N/A
Pfam	UHGV-0030409_30	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0030409_30	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0030409_30	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030409_31	UniRef90_UPI0015FD487B	210.0	0	N/A	N/A
Pfam	UHGV-0030409_31	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-0030409_31	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A