UHGV-0030558 (vOTU-044079)

Viral Genome: UHGV-0030558

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0030558
vOTU ID	vOTU-044079
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_N_19_1307__NODE_708_length_43018_cov_26.116858
Associated BioSample	SAMEA4765758
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9807
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.45
Jumbo phage	No

Genome content
Genome length (bp)	42,966
GC content	52.60%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	75
CDS density	88%
Average CDS length (bps)	502.96
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0030558_1	K14059	139.6	3.39997e-41	int; integrase	N/A
PHROG	UHGV-0030558_1	phrog_1	166.1	0	integrase	integration and excision
UniRef90	UHGV-0030558_1	UniRef90_A0A6N7TNQ4	711.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0030558_1	411471.SUBVAR_05137	263.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0030558_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0030558_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0030558_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030558_2	UniRef90_A0A6N7TLT0	206.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0030558_2	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0030558_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0030558_2	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0030558_5	321955.AAGP01000017_gene2211	55.1	0.000000562	N/A	N/A
structural_annotation	UHGV-0030558_5	PF16900,NF040991	N/A	N/A	N/A	N/A
KOfam	UHGV-0030558_8	K22300	49.5	0.000000000000084	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0030558_8	phrog_2967	48.9	0.00000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0030558_8	UniRef90_A0A844DFR0	169.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0030558_8	748224.HMPREF9436_01444	140.0	5.38995e-41	N/A	N/A
Pfam	UHGV-0030558_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0030558_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0030558_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_14	phrog_463	191.2	0	anti-repressor	transcription regulation
UniRef90	UHGV-0030558_14	UniRef90_A0A3A6JDV4	175.0	0	Phage repressor protein	N/A
eggNOG-mapper	UHGV-0030558_14	1449342.JQMR01000001_gene1041	145.0	2.74e-40	BRO family, N-terminal domain	N/A
Pfam	UHGV-0030558_14	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0030558_14	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0030558_14	COG3617	N/A	N/A	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-0030558_16	1121865.OMW_01950	74.7	1.13e-16	N/A	N/A
structural_annotation	UHGV-0030558_16	PF17516,NF007197	N/A	N/A	N/A	N/A
KOfam	UHGV-0030558_17	K17343	53.9	0.0000000000000014	PRPH2, TSPAN22; peripherin-2	N/A
PHROG	UHGV-0030558_17	phrog_4433	218.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0030558_17	33035.JPJF01000122_gene2458	108.0	1.71e-24	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0030558_17	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0030558_17	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0030558_17	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030558_18	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030558_20	PF09537	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_23	phrog_561	111.5	7.4e-33	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030558_23	UniRef90_UPI0011C8A287	149.0	2.26996e-41	recombinase RecT	N/A
eggNOG-mapper	UHGV-0030558_23	33035.JPJF01000071_gene4462	147.0	1.60995e-41	N/A	N/A
structural_annotation	UHGV-0030558_23	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0030558_24	K03111	144.8	8.29569e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0030558_24	phrog_44	144.3	5.29691e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030558_24	UniRef90_D4K451	268.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0030558_24	718252.FP2_06770	268.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0030558_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0030558_24	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0030558_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0030558_24	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0030558_24	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0030558_25	K02086	69.1	6.8e-20	dnaD; DNA replication protein	N/A
PHROG	UHGV-0030558_25	phrog_186	77.2	2.4e-22	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030558_25	UniRef90_A0A6N7TLH4	259.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0030558_25	877411.JMMA01000002_gene2292	68.6	0.000000000093	N/A	N/A
Pfam	UHGV-0030558_25	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0030558_25	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0030558_25	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0030558_25	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030558_26	PF11417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030558_27	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0030558_29	525919.Apre_0813	48.1	0.00000291	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0030558_29	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
KOfam	UHGV-0030558_30	K01160	44.9	0.000000000003	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0030558_30	phrog_34	42.2	0.000000000015	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030558_30	UniRef90_A0A6N7TND6	117.0	2.41e-32	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0030558_30	875454.BAEW01000002_gene491	85.9	7.59e-21	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0030558_30	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0030558_30	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
PHROG	UHGV-0030558_31	phrog_359	160.2	0	DNA methyltransferase	other
UniRef90	UHGV-0030558_31	UniRef90_A0A3A6JU81	239.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0030558_31	97139.C824_04750	170.0	0	MT-A70	N/A
PADLOC	UHGV-0030558_31	MTase_II_00048	153.7	1.4013e-45	Type II methyltransferase	RM
Pfam	UHGV-0030558_31	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-0030558_31	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-0030558_31	PF05063,NF010253,COG4725	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_32	phrog_36	56.0	7.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0030558_32	UniRef90_A0A6N7TNN9	66.6	0.0000000000878	N/A	N/A
structural_annotation	UHGV-0030558_32	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030558_34	UniRef90_UPI0018CC2891	118.0	5.16e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0030558_34	1235790.C805_00037	108.0	5.9e-28	N/A	N/A
structural_annotation	UHGV-0030558_34	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0030558_35	K06909	137.9	8.30003e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0030558_35	phrog_10250	177.5	0	N/A	unknown function
UniRef90	UHGV-0030558_35	UniRef90_A0A844D8I4	779.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0030558_35	903814.ELI_3215	490.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0030558_35	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0030558_35	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0030558_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0030558_35	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_36	phrog_64	125.8	1.4e-37	portal protein	head and packaging
UniRef90	UHGV-0030558_36	UniRef90_A0A6N7TNT3	652.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0030558_36	673376.F2VHW1_9CAUD	176.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0030558_36	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0030558_36	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_37	phrog_2468	82.0	5.8e-24	head morphogenesis	head and packaging
UniRef90	UHGV-0030558_37	UniRef90_A0A6N7TLR7	600.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0030558_37	1504822.CCNO01000013_gene286	108.0	5.35e-23	cell adhesion	N/A
Pfam	UHGV-0030558_37	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0030558_37	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030558_37	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_39	phrog_8680	198.9	0	N/A	unknown function
UniRef90	UHGV-0030558_39	UniRef90_A0A844D688	450.0	0	N/A	N/A
eggNOG-mapper	UHGV-0030558_39	1423790.BN53_04265	181.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0030558_39	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0030558_39	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0030558_39	PF14386	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030558_41	UniRef90_A0A6N7TNP6	168.0	0	HK97 gp10 family phage protein	N/A
structural_annotation	UHGV-0030558_41	PF04883	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_42	phrog_374	237.4	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030558_42	UniRef90_Q4ZBR0	209.0	0	ORF019	N/A
eggNOG-mapper	UHGV-0030558_42	673376.F2VHW3_9CAUD	264.0	0	sequence-specific DNA binding transcription factor activity	N/A
PHROG	UHGV-0030558_46	phrog_544	112.2	4.9e-33	major head protein	head and packaging
UniRef90	UHGV-0030558_46	UniRef90_A0A1C6B5R0	333.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0030558_46	476272.RUMHYD_01776	298.0	0	N/A	N/A
structural_annotation	UHGV-0030558_46	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_48	phrog_17977	43.7	0.0000000000036	N/A	unknown function
UniRef90	UHGV-0030558_48	UniRef90_A0A844DHJ8	122.0	2e-33	Phage head closure protein	N/A
structural_annotation	UHGV-0030558_48	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030558_49	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_50	phrog_885	68.5	7.8e-20	major tail protein	tail
eggNOG-mapper	UHGV-0030558_50	1111121.HMPREF1247_0789	148.0	1.8301e-42	N/A	N/A
structural_annotation	UHGV-0030558_50	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_53	phrog_9959	99.7	1.6e-29	tail length tape measure protein	tail
UniRef90	UHGV-0030558_53	UniRef90_UPI001C038824	454.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0030558_53	411470.RUMGNA_02228	157.0	4.1e-37	tape measure	N/A
Pfam	UHGV-0030558_53	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0030558_53	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0030558_53	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0030558_53	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030558_54	UniRef90_A0A415UCK7	87.0	7.28e-18	MtfA protein	N/A
eggNOG-mapper	UHGV-0030558_54	1111121.HMPREF1247_1241	96.3	4.12e-22	N/A	N/A
structural_annotation	UHGV-0030558_54	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_55	phrog_3558	182.6	0	tail protein	tail
UniRef90	UHGV-0030558_55	UniRef90_UPI001C01D15B	174.0	2.55036e-43	phage tail protein	N/A
eggNOG-mapper	UHGV-0030558_55	1304866.K413DRAFT_1236	87.8	0.00000000000000251	Phage minor structural protein, N-terminal	N/A
Pfam	UHGV-0030558_55	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0030558_55	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0030558_55	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_56	phrog_32409	79.2	2.4e-23	tail fiber protein	tail
KOfam	UHGV-0030558_57	K07273	164.1	0	acm; lysozyme	N/A
PHROG	UHGV-0030558_57	phrog_291	125.9	3.3e-37	endolysin	lysis
UniRef90	UHGV-0030558_57	UniRef90_A0A564U0D3	346.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0030558_57	718252.FP2_04890	213.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0030558_57	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0030558_57	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0030558_57	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_58	phrog_1863	83.8	8.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0030558_58	718252.FP2_04900	136.0	4.10006e-41	N/A	N/A
PHROG	UHGV-0030558_59	phrog_15303	78.0	9.8e-23	N/A	unknown function
PHROG	UHGV-0030558_60	phrog_1384	113.0	2.4e-33	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0030558_60	665956.HMPREF1032_03086	202.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0030558_60	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030558_62	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0030558_64	phrog_13890	62.2	5.6e-18	N/A	unknown function
UniRef90	UHGV-0030558_64	UniRef90_UPI0008F8D321	52.4	0.000000159	N/A	N/A
eggNOG-mapper	UHGV-0030558_64	742741.HMPREF9475_00396	53.9	0.0000000139	N/A	N/A
structural_annotation	UHGV-0030558_64	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030558_65	UniRef90_A0A174XWS3	76.3	9.65e-16	Bacterial regulatory proteins, luxR family	N/A
eggNOG-mapper	UHGV-0030558_65	689781.AUJX01000009_gene401	70.5	0.00000000000044	N/A	N/A
Pfam	UHGV-0030558_65	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0030558_65	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0030558_68	1160721.RBI_I00206	53.5	0.00000002	N/A	N/A
PHROG	UHGV-0030558_69	phrog_3754	97.9	9.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0030558_69	1235790.C805_00054	112.0	3.22e-30	N/A	N/A
PHROG	UHGV-0030558_70	phrog_21718	124.3	7.1e-37	N/A	unknown function
eggNOG-mapper	UHGV-0030558_70	397290.C810_05210	103.0	4.72e-26	N/A	N/A
PHROG	UHGV-0030558_71	phrog_22984	86.7	1.5e-25	N/A	unknown function
PHROG	UHGV-0030558_72	phrog_16490	152.1	4.2039e-45	N/A	unknown function
eggNOG-mapper	UHGV-0030558_72	397290.C810_05212	130.0	1.13e-33	N/A	N/A
PHROG	UHGV-0030558_73	phrog_20016	210.8	0	N/A	unknown function
UniRef90	UHGV-0030558_73	UniRef90_A0A285PT46	217.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0030558_73	1226322.HMPREF1545_00077	184.0	0	N/A	N/A
structural_annotation	UHGV-0030558_73	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030558_74	PF12510	N/A	N/A	N/A	N/A