UHGV-0030743 (vOTU-044087)

Viral Genome: UHGV-0030743

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0030743
vOTU ID	vOTU-044087
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_F_16_1210__NODE_3897_length_33174_cov_14.606732
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9793
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.13
Jumbo phage	No

Genome content
Genome length (bp)	33,152
GC content	50.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	94%
Average CDS length (bps)	598.79
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0030743_1	phrog_4433	185.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0030743_1	767434.Fraau_1460	115.0	1.42e-29	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0030743_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0030743_4	NF041588	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030743_5	UniRef90_UPI001E431871	155.0	0	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0030743_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0030743_5	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
UniRef90	UHGV-0030743_6	UniRef90_UPI0018995761	93.2	9.92e-24	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0030743_6	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030743_8	UniRef90_UPI001E2EC555	200.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0030743_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0030743_8	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030743_9	PF08797,PF01668,TIGR00086,COG0691	N/A	N/A	N/A	N/A
KOfam	UHGV-0030743_10	K14059	130.4	2.5e-38	int; integrase	N/A
PHROG	UHGV-0030743_10	phrog_1	124.8	8e-37	integrase	integration and excision
UniRef90	UHGV-0030743_10	UniRef90_UPI001E298856	523.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0030743_10	748224.HMPREF9436_03382	270.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0030743_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0030743_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0030743_10	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0030743_11	K01448	63.6	2.8e-18	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0030743_11	phrog_435	71.8	1.2e-20	endolysin	lysis
UniRef90	UHGV-0030743_11	UniRef90_A0A2V2GRI9	444.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0030743_11	697281.Mahau_0053	93.2	2.99e-20	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0030743_11	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0030743_11	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0030743_11	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0030743_12	1347392.CCEZ01000043_gene405	54.7	0.0000000251	N/A	N/A
PHROG	UHGV-0030743_13	phrog_937	52.2	0.00000000000001	hemolysin	other
eggNOG-mapper	UHGV-0030743_13	478749.BRYFOR_07561	80.1	3.51e-18	N/A	N/A
COG	UHGV-0030743_15	COG1413	N/A	N/A	HEAT repeat	N/A
PHROG	UHGV-0030743_16	phrog_5811	79.1	4.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0030743_16	665956.HMPREF1032_00105	124.0	7.34e-32	N/A	N/A
structural_annotation	UHGV-0030743_16	PF20747,TIGR03353	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_17	phrog_7064	93.0	0	tail protein	tail
eggNOG-mapper	UHGV-0030743_17	665956.HMPREF1032_00106	259.0	0	N/A	N/A
Pfam	UHGV-0030743_17	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0030743_17	PF14594,TIGR03361,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_18	phrog_13564	73.2	1.29998e-41	minor tail protein	tail
eggNOG-mapper	UHGV-0030743_18	411471.SUBVAR_05861	189.0	0	N/A	N/A
structural_annotation	UHGV-0030743_18	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_19	phrog_13339	387.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0030743_19	UniRef90_A0A2V2GLB5	913.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0030743_19	1033743.CAES01000020_gene3130	378.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0030743_19	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0030743_19	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0030743_19	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0030743_19	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_20	phrog_709	99.0	2.8e-29	N/A	unknown function
eggNOG-mapper	UHGV-0030743_20	411471.SUBVAR_05858	127.0	2.94e-36	N/A	N/A
structural_annotation	UHGV-0030743_20	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_21	phrog_88	180.2	0	major tail protein	tail
UniRef90	UHGV-0030743_21	UniRef90_A0A2V2GLL2	326.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0030743_21	1226322.HMPREF1545_00121	197.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0030743_21	TIGR01603.1	N/A	N/A	major tail protein	N/A
PHROG	UHGV-0030743_22	phrog_78	40.1	0.000000000061	tail terminator	connector
UniRef90	UHGV-0030743_22	UniRef90_U2SBX3	105.0	1.21e-27	HTH merR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0030743_22	1226322.HMPREF1545_00120	105.0	2.03e-28	N/A	N/A
structural_annotation	UHGV-0030743_22	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_23	phrog_5	43.9	0.0000000000055	tail completion or Neck1 protein	connector
UniRef90	UHGV-0030743_23	UniRef90_UPI00073E355A	161.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0030743_23	1226322.HMPREF1545_00119	101.0	5.28e-26	N/A	N/A
Pfam	UHGV-0030743_23	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0030743_23	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_24	phrog_1951	90.9	7.7e-27	head-tail adaptor	connector
UniRef90	UHGV-0030743_24	UniRef90_A0A2V2GSS5	171.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0030743_24	1226322.HMPREF1545_00118	105.0	5.54e-28	N/A	N/A
NCBIFam	UHGV-0030743_24	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0030743_24	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_25	phrog_2550	83.2	1.5e-24	N/A	unknown function
UniRef90	UHGV-0030743_25	UniRef90_UPI001E35E63D	68.6	0.000000000000335	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0030743_25	1226322.HMPREF1545_00117	106.0	8.07e-29	N/A	N/A
structural_annotation	UHGV-0030743_25	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_26	phrog_10	221.4	0	major head protein	head and packaging
UniRef90	UHGV-0030743_26	UniRef90_A0A2V2GRA2	907.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0030743_26	1226322.HMPREF1545_00116	571.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0030743_26	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0030743_26	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0030743_26	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0030743_26	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0030743_26	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0030743_27	K06904	142.6	3.09967e-42	N/A	N/A
PHROG	UHGV-0030743_27	phrog_80	163.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0030743_27	UniRef90_A0A2V2GNJ3	355.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0030743_27	1226322.HMPREF1545_00115	236.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0030743_27	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0030743_27	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0030743_27	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0030743_27	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_28	phrog_12	178.8	0	portal protein	head and packaging
UniRef90	UHGV-0030743_28	UniRef90_A0A2V2GQD5	728.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0030743_28	1226322.HMPREF1545_00114	503.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0030743_28	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0030743_28	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0030743_28	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0030743_28	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_29	phrog_9	295.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0030743_29	UniRef90_A0A2V2GQ67	1130.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0030743_29	1226322.HMPREF1545_00113	868.0	0	Phage Terminase	N/A
Pfam	UHGV-0030743_29	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0030743_29	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0030743_29	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0030743_29	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_30	phrog_361	68.7	8.7e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0030743_30	UniRef90_A0A1C6H6I9	170.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0030743_30	1329516.JPST01000017_gene431	49.3	0.00000861	Phage terminase, small subunit	N/A
Pfam	UHGV-0030743_30	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0030743_30	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0030743_30	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0030743_31	K07451	50.7	0.000000000000028	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0030743_31	phrog_119	86.9	2.3e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030743_31	UniRef90_A0A2V2GQ57	162.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0030743_31	1226322.HMPREF1545_00111	114.0	1.81e-32	HNH nucleases	N/A
Pfam	UHGV-0030743_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0030743_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0030743_31	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_32	phrog_21498	273.7	0	N/A	unknown function
UniRef90	UHGV-0030743_32	UniRef90_C7MM70	224.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0030743_32	78346.BRUM_0376	225.0	0	DNA binding	N/A
COG	UHGV-0030743_32	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0030743_32	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_33	phrog_7339	97.1	1.3e-28	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030743_33	UniRef90_A0A2V2GLL9	514.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0030743_33	1150474.JQJI01000006_gene784	93.2	2.24e-19	metallophosphoesterase	N/A
Pfam	UHGV-0030743_33	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0030743_33	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
PHROG	UHGV-0030743_34	phrog_36	44.8	0.0000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-0030743_34	UniRef90_UPI001C10AB33	103.0	2.34e-25	N/A	N/A
structural_annotation	UHGV-0030743_34	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_37	phrog_22543	48.5	0.00000000000014	N/A	unknown function
UniRef90	UHGV-0030743_37	UniRef90_A0A8D9PDT5	73.6	0.000000000000011	Hydrogenase/urease nickel incorporation protein	N/A
structural_annotation	UHGV-0030743_40	PF18895	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_42	phrog_1271	42.2	0.000000000015	HNH endonuclease	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0030743_42	TIGR04381	N/A	N/A	N/A	N/A
KOfam	UHGV-0030743_44	K01160	68.6	1.4e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0030743_44	phrog_34	69.9	3.7e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030743_44	UniRef90_A0A498CNH4	138.0	4.13e-40	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0030743_44	1226322.HMPREF1545_04070	53.1	0.000000365	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0030743_44	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0030743_44	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0030743_45	K00558	155.1	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0030743_45	phrog_116	191.4	0	DNA methyltransferase	other
UniRef90	UHGV-0030743_45	UniRef90_D4JYK0	368.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0030743_45	718252.FP2_16350	368.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0030743_45	oMTase_00004	188.2	0	orphan methyltransferase	RM
Pfam	UHGV-0030743_45	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0030743_45	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0030743_45	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0030743_46	phrog_9474	98.6	6.8e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030743_46	UniRef90_A0A417QFV0	114.0	3.24e-27	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0030743_46	203119.Cthe_2466	114.0	5.78e-27	N/A	N/A
structural_annotation	UHGV-0030743_46	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0030743_47	K03111	122.7	4.5e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0030743_47	phrog_44	128.3	5.4e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030743_47	UniRef90_UPI001E2A5A6F	209.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0030743_47	445972.ANACOL_01827	122.0	3.53e-34	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0030743_47	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0030743_47	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0030743_47	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0030743_47	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0030743_47	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_48	phrog_7566	51.8	0.000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0030743_48	693746.OBV_24070	73.6	0.00000000000000252	N/A	N/A
PHROG	UHGV-0030743_49	phrog_72	53.3	0.0000000000000036	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030743_49	UniRef90_UPI000C7BF263	132.0	3.25e-36	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0030743_49	445972.ANACOL_01825	138.0	3.74e-39	N/A	N/A
structural_annotation	UHGV-0030743_49	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_50	phrog_14970	195.4	0	N/A	unknown function
UniRef90	UHGV-0030743_50	UniRef90_UPI00123F00F5	179.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0030743_50	428127.EUBDOL_01248	154.0	3.78351e-44	double-strand break repair protein	N/A
Pfam	UHGV-0030743_50	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0030743_50	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0030743_50	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0030743_52	phrog_27197	118.7	2e-35	N/A	unknown function
eggNOG-mapper	UHGV-0030743_52	394503.Ccel_3068	56.2	0.0000000251	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0030743_52	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A