UHGV-0030961 (vOTU-128058)

Viral Genome: UHGV-0030961

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0030961
vOTU ID	vOTU-128058
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_F_16_1210__NODE_6347_length_22219_cov_10.604869
Associated BioSample	SAMEA4765669
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.15
Jumbo phage	No

Genome content
Genome length (bp)	22,219
GC content	53.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	91%
Average CDS length (bps)	420.94
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0030961_2	phrog_3754	111.1	8.4e-33	N/A	unknown function
eggNOG-mapper	UHGV-0030961_2	1226322.HMPREF1545_00073	164.0	0	N/A	N/A
PHROG	UHGV-0030961_3	phrog_21718	111.3	7e-33	N/A	unknown function
eggNOG-mapper	UHGV-0030961_3	397290.C810_05210	68.6	0.00000000000217	N/A	N/A
PHROG	UHGV-0030961_4	phrog_22984	69.6	3.2e-20	N/A	unknown function
PHROG	UHGV-0030961_5	phrog_16490	146.2	4.06377e-44	N/A	unknown function
eggNOG-mapper	UHGV-0030961_5	1408437.JNJN01000043_gene803	165.0	0	N/A	N/A
PHROG	UHGV-0030961_6	phrog_20016	191.9	0	N/A	unknown function
UniRef90	UHGV-0030961_6	UniRef90_A0A285PT46	176.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0030961_6	1226322.HMPREF1545_00077	161.0	0	N/A	N/A
structural_annotation	UHGV-0030961_6	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030961_7	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0030961_8	1232443.BAIA02000078_gene6	55.1	0.0000000358	N/A	N/A
KOfam	UHGV-0030961_9	K14059	199.9	0	int; integrase	N/A
PHROG	UHGV-0030961_9	phrog_1	177.5	0	integrase	integration and excision
UniRef90	UHGV-0030961_9	UniRef90_UPI001EDE32BF	490.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0030961_9	1226322.HMPREF1545_00144	321.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0030961_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0030961_9	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0030961_9	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030961_10	UniRef90_R5HRH2	52.0	0.00000698	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0030961_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0030961_10	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0030961_10	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0030961_11	phrog_301	44.8	0.0000000000024	secreted protein	other
eggNOG-mapper	UHGV-0030961_11	1262449.CP6013_2082	174.0	0	N/A	N/A
structural_annotation	UHGV-0030961_11	PF11631,TIGR03066	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0030961_14	742740.HMPREF9474_03483	49.7	0.00000514	N/A	N/A
structural_annotation	UHGV-0030961_14	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030961_15	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0030961_18	phrog_8	41.7	0.000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0030961_18	UniRef90_N9Z4Q7	51.6	0.000000341	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0030961_18	1341157.RF007C_00125	50.1	0.00000238	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0030961_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0030961_18	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0030961_18	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030961_19	UniRef90_UPI001379F3AB	219.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0030961_19	1410624.JNKK01000001_gene663	179.0	0	N/A	N/A
COG	UHGV-0030961_19	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0030961_19	MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0030961_20	phrog_1033	53.2	0.0000000000000052	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030961_20	UniRef90_UPI0013716616	217.0	0	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0030961_20	411483.FAEPRAA2165_02279	155.0	2.14399e-43	DNA binding	N/A
Pfam	UHGV-0030961_20	PF20188	N/A	N/A	N/A	DUF6551
COG	UHGV-0030961_20	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0030961_20	PF20188,MF_02015,TIGR03233,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0030961_23	K00571	110.9	1.6e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0030961_23	phrog_67	96.6	1.2e-28	DNA methyltransferase	other
UniRef90	UHGV-0030961_23	UniRef90_A0A1C6E5W1	437.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0030961_23	35241.Q9XJE8_BPTU2	365.0	0	helicase activity	N/A
PADLOC	UHGV-0030961_23	MTase_II_00157	92.0	8.9e-27	Type II methyltransferase	RM
Pfam	UHGV-0030961_23	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0030961_23	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0030961_24	phrog_22529	96.4	1.6e-28	N/A	unknown function
UniRef90	UHGV-0030961_24	UniRef90_A0A352RPR8	140.0	2.29e-39	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0030961_24	556261.HMPREF0240_00042	106.0	2.57e-24	NlpC/P60 family	N/A
Pfam	UHGV-0030961_24	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0030961_24	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0030961_24	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0030961_26	phrog_434	288.9	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030961_26	UniRef90_U2SK35	428.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0030961_26	1226322.HMPREF1545_00014	428.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0030961_26	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0030961_26	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0030961_26	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0030961_26	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0030961_27	K07455	291.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0030961_27	phrog_148	275.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030961_27	UniRef90_U2SBP2	434.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-0030961_27	1226322.HMPREF1545_00015	434.0	0	RecT family	N/A
Pfam	UHGV-0030961_27	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0030961_27	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0030961_27	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0030961_27	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0030961_28	K03111	122.2	6.8e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0030961_28	phrog_44	115.0	7.7e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030961_28	UniRef90_R5SNS5	150.0	5.88545e-44	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0030961_28	1519439.JPJG01000082_gene432	145.0	9.05239e-43	Single-strand binding protein family	N/A
Pfam	UHGV-0030961_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0030961_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0030961_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0030961_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0030961_28	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0030961_29	phrog_2562	155.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030961_29	UniRef90_A0A3A6E2X3	240.0	0	N/A	N/A
eggNOG-mapper	UHGV-0030961_29	445971.ANASTE_00700	156.0	6.30584e-44	N/A	N/A
Pfam	UHGV-0030961_29	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0030961_29	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0030961_29	PF14297,TIGR01446,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0030961_30	K02315	177.1	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0030961_30	phrog_50	156.3	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030961_30	UniRef90_UPI00137A9A0F	283.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0030961_30	203119.Cthe_2467	261.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0030961_30	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0030961_30	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0030961_30	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0030961_30	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0030961_31	phrog_190	115.6	3.7e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030961_31	UniRef90_UPI001C0170D2	108.0	3.96e-27	N/A	N/A
eggNOG-mapper	UHGV-0030961_31	1226322.HMPREF1545_00295	123.0	8.05e-34	N/A	N/A
Pfam	UHGV-0030961_31	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0030961_31	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0030961_32	K23779	50.7	1.8e-27	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0030961_32	phrog_8	79.5	2.2e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0030961_32	UniRef90_A0A4D7DRE0	55.1	0.00000183	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0030961_32	768706.Desor_1923	52.0	0.000000623	Transcriptional regulator	N/A
Pfam	UHGV-0030961_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0030961_32	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0030961_32	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0030961_32	PF01381,PF13744,NF041951,COG3655,COG2944	N/A	N/A	N/A	N/A
Pfam	UHGV-0030961_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0030961_33	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0030961_34	phrog_757	50.6	0.000000000000031	DNA methyltransferase	other
UniRef90	UHGV-0030961_34	UniRef90_A0A7J2R6L5	72.4	6.28e-16	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0030961_34	748224.HMPREF9436_03069	99.4	2.1e-25	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0030961_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
eggNOG-mapper	UHGV-0030961_35	1280696.ATVY01000096_gene1971	50.1	0.00000139	N/A	N/A
COG	UHGV-0030961_35	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-0030961_36	phrog_27610	51.2	0.000000000000013	N/A	unknown function
UniRef90	UHGV-0030961_37	UniRef90_A0A098GES5	89.4	3.14e-21	Putative phage associated protein	N/A
structural_annotation	UHGV-0030961_37	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030961_38	UniRef90_UPI0012AD39DD	58.5	0.000000628	leucine-rich repeat protein	N/A
PHROG	UHGV-0030961_39	phrog_38832	56.5	1.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-0030961_39	665956.HMPREF1032_00143	62.4	0.000000000658	N/A	N/A
PHROG	UHGV-0030961_40	phrog_599	43.0	0.0000000000091	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0030961_40	UniRef90_A0A845MWR1	90.9	6.67e-23	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0030961_40	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0030961_40	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0030961_40	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0030961_41	phrog_22543	47.4	0.000000000000083	N/A	unknown function
UniRef90	UHGV-0030961_41	UniRef90_A0A8D9PDT5	66.6	0.00000000000322	Hydrogenase/urease nickel incorporation protein	N/A
eggNOG-mapper	UHGV-0030961_44	445972.ANACOL_00168	48.5	0.00000126	N/A	N/A
eggNOG-mapper	UHGV-0030961_46	742738.HMPREF9460_02503	86.7	2.52e-21	N/A	N/A
structural_annotation	UHGV-0030961_46	PF02001,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0030961_47	K07474	112.5	6.9e-33	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0030961_47	phrog_51	105.4	4.3e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0030961_47	UniRef90_UPI001D05F697	167.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0030961_47	697281.Mahau_0566	86.3	1.39e-19	Terminase Small Subunit	N/A
Pfam	UHGV-0030961_47	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0030961_47	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0030961_47	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0030961_48	K06909	247.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0030961_48	phrog_3717	159.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0030961_48	UniRef90_A0A4D7AZ70	511.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0030961_48	33035.JPJF01000106_gene3136	317.0	0	Terminase small subunit	N/A
Pfam	UHGV-0030961_48	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0030961_48	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0030961_48	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0030961_48	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A