UHGV-0030985 (vOTU-136013)

Viral Genome: UHGV-0030985

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0030985
vOTU ID	vOTU-136013
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_L_3_1264__NODE_1690_length_36292_cov_267.607041
Associated BioSample	SAMEA4765718
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.69 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.57
Jumbo phage	No

Genome content
Genome length (bp)	36,292
GC content	45.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	92%
Average CDS length (bps)	619.44
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.69)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0030985_2	1203606.HMPREF1526_02741	61.2	0.0000000353	N/A	N/A
eggNOG-mapper	UHGV-0030985_3	411469.EUBHAL_00974	69.3	0.0000000000965	CHAP domain	N/A
COG	UHGV-0030985_3	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0030985_3	PF18341,NF040678,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-0030985_4	K01448	104.5	1.2e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0030985_4	phrog_435	132.5	3.8e-39	endolysin	lysis
UniRef90	UHGV-0030985_4	UniRef90_A0A6N7X525	268.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0030985_4	1392487.JIAD01000001_gene506	207.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0030985_4	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0030985_4	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0030985_4	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0030985_5	phrog_1129	66.2	3.2e-19	holin	lysis
UniRef90	UHGV-0030985_5	UniRef90_A0A2S0L5I2	95.9	2.32e-23	Holin	N/A
eggNOG-mapper	UHGV-0030985_5	1158601.I585_01143	71.6	0.00000000000000699	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0030985_5	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0030985_5	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0030985_6	657322.FPR_21890	55.5	0.0000000529	N/A	N/A
PHROG	UHGV-0030985_7	phrog_25468	64.3	3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0030985_7	764299.STRIC_1424	56.6	0.00000354	tail collar domain protein	N/A
COG	UHGV-0030985_7	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0030985_9	phrog_6465	61.2	1.9e-17	tail protein	tail
eggNOG-mapper	UHGV-0030985_9	1410624.JNKK01000017_gene1989	122.0	2.08e-30	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0030985_9	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0030985_9	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0030985_10	phrog_24103	56.6	2.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0030985_10	1118055.CAGU01000013_gene761	53.9	0.00000743	N/A	N/A
PHROG	UHGV-0030985_12	phrog_511	185.7	0	internal virion protein	head and packaging
UniRef90	UHGV-0030985_12	UniRef90_A0A348ZD54	154.0	8.55e-36	Dockerin domain-containing protein	N/A
eggNOG-mapper	UHGV-0030985_12	1321782.HMPREF1986_00351	199.0	0	N/A	N/A
structural_annotation	UHGV-0030985_12	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0030985_13	phrog_12105	66.2	4.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0030985_13	1226322.HMPREF1545_03850	64.3	0.0000000000158	N/A	N/A
PHROG	UHGV-0030985_14	phrog_15239	44.7	0.0000000000014	N/A	unknown function
PHROG	UHGV-0030985_15	phrog_1357	253.0	0	major head protein	head and packaging
UniRef90	UHGV-0030985_15	UniRef90_UPI001CF8B373	365.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0030985_15	1203606.HMPREF1526_02746	302.0	0	N/A	N/A
Pfam	UHGV-0030985_15	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0030985_15	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0030985_15	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0030985_16	phrog_13908	181.9	0	N/A	unknown function
UniRef90	UHGV-0030985_16	UniRef90_A0A174CZ20	80.1	0.000000000000392	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-0030985_16	1410650.JHWL01000003_gene2831	90.5	5.75e-18	N/A	N/A
PHROG	UHGV-0030985_18	phrog_156	313.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0030985_18	748224.HMPREF9436_01396	412.0	0	N/A	N/A
structural_annotation	UHGV-0030985_18	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0030985_19	K06909	144.6	9.09443e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0030985_19	phrog_979	151.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0030985_19	UniRef90_UPI0010311CEE	586.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0030985_19	1410650.JHWL01000003_gene2834	580.0	0	N/A	N/A
Pfam	UHGV-0030985_19	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0030985_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0030985_19	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030985_20	NF040601	N/A	N/A	N/A	N/A
PHROG	UHGV-0030985_21	phrog_2059	41.1	0.000000000035	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0030985_21	UniRef90_A0A7S7LVU1	57.8	0.000000257	Antirestriction protein ArdA	N/A
Pfam	UHGV-0030985_21	PF07275	N/A	N/A	Antirestriction protein (ArdA)	ArdA
dbAPIS	UHGV-0030985_21	APIS003	N/A	N/A	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	N/A
COG	UHGV-0030985_21	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0030985_21	PF07275,COG4734	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030985_23	PF07878,NF010256,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-0030985_26	phrog_2245	77.5	1.7e-22	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0030985_26	UniRef90_A0A846K3D1	56.6	0.0000000191	MazG domain-containing protein	N/A
structural_annotation	UHGV-0030985_26	NF001611,COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-0030985_27	phrog_355	64.1	1.8e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030985_27	UniRef90_A0A8B3A5C7	94.0	9.9e-22	N/A	N/A
eggNOG-mapper	UHGV-0030985_27	97138.C820_00250	92.4	6.09e-22	N/A	N/A
Pfam	UHGV-0030985_27	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0030985_27	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0030985_30	phrog_21026	47.1	0.0000000000004	N/A	unknown function
PHROG	UHGV-0030985_34	phrog_190	133.0	1.9e-39	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030985_34	UniRef90_A0A6N7XIA3	153.0	0	N/A	N/A
eggNOG-mapper	UHGV-0030985_34	1236514.BAKL01000051_gene3708	109.0	9.32e-30	N/A	N/A
Pfam	UHGV-0030985_34	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0030985_34	PF06356	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030985_35	UniRef90_UPI0012923FF4	85.9	1.31e-20	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0030985_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0030985_35	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0030985_36	phrog_474	99.6	4.9e-29	phosphofructokinase	other
UniRef90	UHGV-0030985_36	UniRef90_UPI001D174B3C	198.0	0	N/A	N/A
eggNOG-mapper	UHGV-0030985_36	1111121.HMPREF1247_0807	79.0	6.57e-18	N/A	N/A
Pfam	UHGV-0030985_36	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0030985_36	PF19905	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0030985_38	760568.Desku_0919	77.0	0.0000000000000125	N/A	N/A
structural_annotation	UHGV-0030985_38	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0030985_41	K02315	141.8	5.89947e-42	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0030985_41	phrog_50	136.7	1.7e-40	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030985_41	UniRef90_A0A6N7X559	171.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0030985_41	1392493.JIAB01000001_gene1377	153.0	2.78999e-42	IstB-like ATP binding protein	N/A
Pfam	UHGV-0030985_41	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0030985_41	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0030985_41	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0030985_43	phrog_6969	83.1	2.7e-24	N/A	unknown function
UniRef90	UHGV-0030985_43	UniRef90_A0A1M5Z645	103.0	5.27e-23	Phage replication protein O	N/A
eggNOG-mapper	UHGV-0030985_43	742733.HMPREF9469_01845	107.0	4.9e-25	N/A	N/A
Pfam	UHGV-0030985_43	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0030985_43	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0030985_44	K03111	124.6	1.3e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0030985_44	phrog_44	114.7	9.8e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030985_44	UniRef90_R6E0A2	128.0	1.16e-35	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0030985_44	936375.HMPREF1152_1764	123.0	2.19e-34	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0030985_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0030985_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0030985_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0030985_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0030985_44	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0030985_45	phrog_72	63.5	2.2e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030985_45	UniRef90_A0A8D9PDS2	100.0	2.26e-23	NinB protein	N/A
eggNOG-mapper	UHGV-0030985_45	445972.ANACOL_01825	112.0	5.75e-29	N/A	N/A
structural_annotation	UHGV-0030985_45	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0030985_46	phrog_7566	104.0	6.7e-31	N/A	unknown function
UniRef90	UHGV-0030985_46	UniRef90_A0A3R6Y3R0	66.6	0.00000000000413	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0030985_46	411459.RUMOBE_00948	69.3	0.0000000000001	N/A	N/A
PHROG	UHGV-0030985_47	phrog_11717	145.6	1.4013e-43	N/A	unknown function
eggNOG-mapper	UHGV-0030985_47	1399942.U3PCT3_9CAUD	159.0	0	N/A	N/A
structural_annotation	UHGV-0030985_47	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030985_51	UniRef90_A0A2W6D591	47.8	0.00000799	HTH_17 domain-containing protein	N/A
Pfam	UHGV-0030985_51	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0030985_51	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0030985_51	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0030985_51	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030985_52	UniRef90_A0A373V5W6	50.8	0.00000183	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0030985_52	1298920.KI911353_gene527	55.1	0.0000000112	N/A	N/A
structural_annotation	UHGV-0030985_52	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0030985_53	K22300	48.2	0.00000000000025	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0030985_53	phrog_8	56.8	5.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0030985_53	UniRef90_UPI00034E499C	77.0	7.99e-16	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0030985_53	478749.BRYFOR_07570	76.6	0.00000000000000117	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0030985_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0030985_53	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0030985_53	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0030985_54	K14059	204.3	0	int; integrase	N/A
PHROG	UHGV-0030985_54	phrog_1	176.2	0	integrase	integration and excision
UniRef90	UHGV-0030985_54	UniRef90_A0A7Y9B158	294.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0030985_54	936375.HMPREF1152_0651	284.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0030985_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0030985_54	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0030985_54	PF00589,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A