UHGV-0030988 (vOTU-136009)

Viral Genome: UHGV-0030988

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0030988
vOTU ID	vOTU-136009
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_G_18_2610__NODE_2757_length_33918_cov_18.322360
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.55 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.03
Jumbo phage	No

Genome content
Genome length (bp)	33,918
GC content	56.39%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	93%
Average CDS length (bps)	630.96
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 78.55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0030988_2	phrog_872	152.7	0	N/A	unknown function
UniRef90	UHGV-0030988_2	UniRef90_A0A8J6M9F5	214.0	0	N/A	N/A
eggNOG-mapper	UHGV-0030988_2	1519439.JPJG01000060_gene1880	199.0	0	N/A	N/A
Pfam	UHGV-0030988_2	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0030988_2	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0030988_2	PF11195	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0030988_3	445972.ANACOL_00168	49.3	0.000000532	N/A	N/A
UniRef90	UHGV-0030988_5	UniRef90_A0A8D9PDT5	117.0	3.92e-31	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-0030988_6	phrog_38832	52.2	1.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0030988_6	665956.HMPREF1032_00143	65.5	0.000000000042	N/A	N/A
structural_annotation	UHGV-0030988_6	PF18300,MF_01549,NF008636,COG4568	N/A	N/A	N/A	N/A
KOfam	UHGV-0030988_8	K00558	82.9	2.7e-24	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0030988_8	phrog_116	90.7	1.2e-26	DNA methyltransferase	other
UniRef90	UHGV-0030988_8	UniRef90_K1R461	202.0	0	DNA-cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0030988_8	693746.OBV_08830	167.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0030988_8	oMTase_00004	131.4	1e-38	orphan methyltransferase	RM
Pfam	UHGV-0030988_8	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0030988_8	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
Pfam	UHGV-0030988_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0030988_9	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0030988_9	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0030988_10	K23779	53.7	4.7e-27	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0030988_10	phrog_8	76.9	4e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0030988_10	UniRef90_UPI00115BCC30	60.8	0.00000000813	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0030988_10	1414719.CBYN010000013_gene1538	55.8	0.0000000631	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0030988_10	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-0030988_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0030988_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0030988_10	PF01381,PF13744,NF041951,COG3655,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0030988_12	K01160	56.1	9.7e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0030988_12	phrog_140	103.8	1.3e-30	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030988_12	UniRef90_A0A6B9STS5	90.9	2.53e-20	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0030988_12	665956.HMPREF1032_03604	80.1	8.61e-17	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0030988_12	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0030988_12	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
PHROG	UHGV-0030988_15	phrog_9804	47.7	0.0000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0030988_15	1121344.JHZO01000003_gene981	67.0	0.00000000000597	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0030988_15	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0030988_15	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0030988_16	phrog_2149	68.5	1.2e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030988_16	UniRef90_A0A7X4ZCR1	95.9	5.79e-20	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0030988_16	1095750.HMPREF9970_1674	217.0	0	N/A	N/A
structural_annotation	UHGV-0030988_16	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0030988_17	K03111	120.7	1.9e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0030988_17	phrog_44	119.0	4.3e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030988_17	UniRef90_A0A1Q6R0X3	140.0	3.86e-40	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0030988_17	1519439.JPJG01000082_gene432	137.0	9.12e-40	Single-strand binding protein family	N/A
Pfam	UHGV-0030988_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0030988_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0030988_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0030988_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0030988_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0030988_18	K07455	291.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0030988_18	phrog_148	276.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030988_18	UniRef90_U2SBP2	433.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-0030988_18	1226322.HMPREF1545_00015	433.0	0	RecT family	N/A
Pfam	UHGV-0030988_18	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0030988_18	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0030988_18	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0030988_18	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0030988_19	phrog_434	280.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030988_19	UniRef90_U2SK35	412.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0030988_19	1226322.HMPREF1545_00014	412.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0030988_19	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0030988_19	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0030988_19	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0030988_19	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0030988_21	phrog_22529	99.1	2.5e-29	N/A	unknown function
UniRef90	UHGV-0030988_21	UniRef90_A0A352RPR8	141.0	1.62e-39	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0030988_21	1298920.KI911353_gene568	108.0	9.25e-27	3D domain	N/A
Pfam	UHGV-0030988_21	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0030988_21	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0030988_21	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030988_22	UniRef90_A0A8D9PDM8	66.2	0.000000000000599	Pyocin activator protein	N/A
structural_annotation	UHGV-0030988_22	PF11112,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0030988_24	phrog_8	41.9	0.000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-0030988_24	UniRef90_UPI001663839E	61.6	0.0000000000378	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0030988_24	1378168.N510_01712	58.9	0.00000000142	N/A	N/A
Pfam	UHGV-0030988_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0030988_24	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0030988_26	K07727	42.2	0.000000000019	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0030988_26	phrog_8	49.6	0.000000000000093	transcriptional regulator	transcription regulation
UniRef90	UHGV-0030988_26	UniRef90_UPI000C7BE75B	83.6	1.8e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0030988_26	665956.HMPREF1032_02614	57.8	0.00000000321	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0030988_26	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0030988_26	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030988_28	PF10754	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030988_29	UniRef90_R5HRH2	53.5	0.00000217	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0030988_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0030988_29	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0030988_29	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0030988_30	K14059	153.9	1.4013e-45	int; integrase	N/A
PHROG	UHGV-0030988_30	phrog_1	153.6	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-0030988_30	UniRef90_A0A1C5W824	555.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0030988_30	693746.OBV_41260	300.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0030988_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0030988_30	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0030988_30	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030988_31	UniRef90_A0A843GWV6	112.0	2.3e-30	Rubrerythrin domain-containing protein	N/A
structural_annotation	UHGV-0030988_33	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030988_36	UniRef90_A0A8D9PDQ3	80.1	3.33e-18	ECF sigma factor	N/A
structural_annotation	UHGV-0030988_36	PF04545,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0030988_37	phrog_21825	115.4	5.1e-34	endolysin	lysis
UniRef90	UHGV-0030988_37	UniRef90_R5SN87	268.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0030988_37	1007096.BAGW01000017_gene816	133.0	3.35e-36	CHAP domain	N/A
Pfam	UHGV-0030988_37	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0030988_37	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0030988_37	TIGR02594	N/A	N/A	N/A	N/A
PHROG	UHGV-0030988_38	phrog_13256	60.9	1.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0030988_38	1226322.HMPREF1545_00166	72.4	6.16e-16	N/A	N/A
PHROG	UHGV-0030988_40	phrog_937	43.5	0.0000000000054	hemolysin	other
eggNOG-mapper	UHGV-0030988_40	1519439.JPJG01000023_gene533	97.4	3.74e-25	N/A	N/A
PHROG	UHGV-0030988_41	phrog_22978	761.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0030988_41	1519439.JPJG01000060_gene1905	436.0	0	N/A	N/A
Pfam	UHGV-0030988_41	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
eggNOG-mapper	UHGV-0030988_42	1203606.HMPREF1526_02741	107.0	1.29e-23	N/A	N/A
PHROG	UHGV-0030988_43	phrog_511	188.9	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0030988_43	1226322.HMPREF1545_00785	439.0	0	N/A	N/A
structural_annotation	UHGV-0030988_43	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030988_45	PF18707,NF041740,COG5501	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0030988_46	1226322.HMPREF1545_00783	80.5	0.0000000000000266	Chaperone of endosialidase	N/A
structural_annotation	UHGV-0030988_46	PF07902,NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-0030988_47	phrog_12105	56.3	6.2e-16	N/A	unknown function
PHROG	UHGV-0030988_48	phrog_27545	145.3	1.69557e-43	N/A	unknown function
UniRef90	UHGV-0030988_48	UniRef90_A0A2V2GQB6	159.0	1.4013e-45	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0030988_48	1519439.JPJG01000060_gene1895	322.0	0	N/A	N/A
Pfam	UHGV-0030988_48	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0030988_48	PF16170	N/A	N/A	N/A	N/A
Pfam	UHGV-0030988_49	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0030988_49	PF19789,PF08244	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0030988_50	1519439.JPJG01000060_gene1892	96.7	1.76e-22	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0030988_50	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A