UHGV-0031183 (vOTU-044122)

Viral Genome: UHGV-0031183

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0031183
vOTU ID	vOTU-044122
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_O_2_2674__NODE_2285_length_35781_cov_20.699389
Associated BioSample	SAMEA4766409
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9573
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.46
Jumbo phage	No

Genome content
Genome length (bp)	35,704
GC content	52.11%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	94%
Average CDS length (bps)	634.98
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0031183_1	K15519	145.3	3.89561e-43	dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]	N/A
PHROG	UHGV-0031183_1	phrog_761	61.4	1.9e-17	thymidylate kinase	other
UniRef90	UHGV-0031183_1	UniRef90_A0A2D6MHG0	140.0	7.79e-38	dNK domain-containing protein	N/A
eggNOG-mapper	UHGV-0031183_1	45351.EDO42180	124.0	1.39e-32	mitochondrial electron transport, NADH to ubiquinone	N/A
Pfam	UHGV-0031183_1	PF01712	N/A	N/A	Deoxynucleoside kinase	dNK
COG	UHGV-0031183_1	COG1428	N/A	N/A	Deoxyadenosine/deoxycytidine kinase	N/A
structural_annotation	UHGV-0031183_1	PF01712,MF_00165,NF005923,COG1428	N/A	N/A	N/A	N/A
PHROG	UHGV-0031183_6	phrog_824	132.3	1.8e-39	N/A	unknown function
UniRef90	UHGV-0031183_6	UniRef90_A0A120KLV2	117.0	1.9e-31	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0031183_6	767434.Fraau_0982	114.0	2.53e-31	VRR-NUC domain	N/A
Pfam	UHGV-0031183_6	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0031183_7	K03111	143.0	3.00018e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0031183_7	phrog_44	129.4	2.6e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031183_7	UniRef90_A0A1J5DQV8	128.0	1.35e-35	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0031183_7	484770.UFO1_2490	114.0	1.59e-30	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0031183_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0031183_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0031183_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0031183_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0031183_7	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031183_8	UniRef90_A0A2R7LBV9	76.6	0.000000000000761	DNA methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0031183_8	1287476.HMPREF1651_09165	79.3	0.0000000000000251	D12 class N6 adenine-specific DNA methyltransferase	N/A
COG	UHGV-0031183_8	COG0338	N/A	N/A	DNA-adenine methylase	N/A
PHROG	UHGV-0031183_13	phrog_1366	266.0	0	N/A	unknown function
UniRef90	UHGV-0031183_13	UniRef90_A0A2R4NNU1	248.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0031183_13	520999.PROVALCAL_02545	244.0	0	AAA domain	N/A
Pfam	UHGV-0031183_13	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0031183_13	COG0470	N/A	N/A	DNA polymerase III, delta prime subunit	N/A
KOfam	UHGV-0031183_24	K21512	207.2	0	gpA; terminase, large subunit [EC:3.1.21.4]	N/A
PHROG	UHGV-0031183_24	phrog_15	310.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0031183_24	UniRef90_A0A0T7A6I5	431.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0031183_24	1227268.HMPREF1552_01557	202.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0031183_24	PF05876	N/A	N/A	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
Pfam	UHGV-0031183_24	PF20454	N/A	N/A	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
COG	UHGV-0031183_24	COG5525	N/A	N/A	Phage terminase, large subunit GpA	N/A
structural_annotation	UHGV-0031183_24	PF05876,PF20454,MF_04144,TIGR01547,COG5525	N/A	N/A	N/A	N/A
PHROG	UHGV-0031183_25	phrog_118	43.4	0.0000000000044	head-tail adaptor	connector
eggNOG-mapper	UHGV-0031183_25	445972.ANACOL_03358	50.1	0.000000825	N/A	N/A
PHROG	UHGV-0031183_26	phrog_21	206.1	0	portal protein	head and packaging
UniRef90	UHGV-0031183_26	UniRef90_UPI00195E6E0F	230.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0031183_26	1203606.HMPREF1526_01901	213.0	0	Phage portal protein, lambda family	N/A
Pfam	UHGV-0031183_26	PF05136	N/A	N/A	Phage portal protein, lambda family	Phage_portal_2
NCBIFam	UHGV-0031183_26	TIGR01539.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0031183_26	COG5511	N/A	N/A	Phage capsid protein	N/A
structural_annotation	UHGV-0031183_26	PF05136,MF_04135,TIGR01539,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0031183_27	K01358	75.2	1e-21	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0031183_27	phrog_94	105.6	7.3e-31	head maturation protease	head and packaging
UniRef90	UHGV-0031183_27	UniRef90_A0A519I0M1	69.7	0.000000000759	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0031183_27	1514668.JOOA01000001_gene207	69.3	0.000000000319	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0031183_27	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0031183_27	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
PHROG	UHGV-0031183_28	phrog_29	60.0	1.2e-17	major head protein	head and packaging
UniRef90	UHGV-0031183_28	UniRef90_A0A1C6JH61	85.5	0.0000000000000216	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-0031183_28	391598.FBBAL38_08809	62.0	0.000000504	TIGRFAM Bacterial surface protein 26-residue repeat	N/A
Pfam	UHGV-0031183_28	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
COG	UHGV-0031183_28	COG1470	N/A	N/A	N/A	N/A
KOfam	UHGV-0031183_31	K06907	115.3	5e-34	N/A	N/A
PHROG	UHGV-0031183_31	phrog_23	108.6	6e-34	tail sheath	tail
UniRef90	UHGV-0031183_31	UniRef90_UPI0005D1736E	171.0	5.60519e-45	phage tail sheath family protein	N/A
eggNOG-mapper	UHGV-0031183_31	1203606.HMPREF1526_01909	177.0	0	COG3497 Phage tail sheath protein FI	N/A
Pfam	UHGV-0031183_31	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
COG	UHGV-0031183_31	COG3497	N/A	N/A	Phage tail sheath protein FI	N/A
structural_annotation	UHGV-0031183_31	PF10758,TIGR03355,COG3497	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031183_32	UniRef90_A0A358PQ20	58.5	0.000000143	Protoporphyrinogen oxidase	N/A
eggNOG-mapper	UHGV-0031183_32	1235794.C811_01526	70.1	0.00000000000106	Phage tail tube protein FII	N/A
Pfam	UHGV-0031183_32	PF04985	N/A	N/A	Phage tail tube protein FII	Phage_tube
COG	UHGV-0031183_32	COG3498	N/A	N/A	Phage tail tube protein FII	N/A
structural_annotation	UHGV-0031183_32	PF04985,TIGR01611,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031183_33	UniRef90_A0A447EB34	57.4	0.0000000206	Inhibitor of Type II CRISPR-Cas system	N/A
PHROG	UHGV-0031183_35	phrog_46	44.2	0.0000000000025	tail protein	tail
UniRef90	UHGV-0031183_35	UniRef90_UPI001C8E5305	57.4	0.00000000196	tail protein X	N/A
eggNOG-mapper	UHGV-0031183_35	1285586.H131_21832	47.4	0.00000285	Phage Tail Protein X	N/A
Pfam	UHGV-0031183_35	PF05489	N/A	N/A	Phage Tail Protein X	Phage_tail_X
COG	UHGV-0031183_35	COG5004	N/A	N/A	P2-like prophage tail protein X	N/A
PHROG	UHGV-0031183_41	phrog_6	148.8	3.92364e-44	baseplate protein	tail
UniRef90	UHGV-0031183_41	UniRef90_A0A6N3FBS6	94.4	8.56e-18	Baseplate J-like protein	N/A
eggNOG-mapper	UHGV-0031183_41	1122222.AXWR01000008_gene2440	58.5	0.00000125	Baseplate J family protein	N/A
Pfam	UHGV-0031183_41	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0031183_41	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031183_41	PF04865,PF21379,MF_04102,TIGR02243,COG3948	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031183_42	1235793.C809_02679	56.2	0.00000087	Phage tail protein (Tail_P2_I)	N/A
Pfam	UHGV-0031183_42	PF09684	N/A	N/A	Phage tail protein (Tail_P2_I)	Tail_P2_I
COG	UHGV-0031183_42	COG4385	N/A	N/A	Bacteriophage P2-related tail formation protein	N/A
eggNOG-mapper	UHGV-0031183_43	1408428.JNJP01000025_gene296	100.0	1.95e-20	N/A	N/A
PHROG	UHGV-0031183_44	phrog_4912	88.0	1.4e-25	tail fiber assembly	tail
UniRef90	UHGV-0031183_44	UniRef90_UPI00068593FB	73.6	0.0000000000000251	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0031183_44	742823.HMPREF9465_01858	86.7	2.36e-19	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-0031183_44	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0031183_44	PF16778	N/A	N/A	N/A	N/A
KOfam	UHGV-0031183_48	K01447	86.7	3.3e-25	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0031183_48	phrog_1794	84.4	1.8e-24	amidase	lysis
UniRef90	UHGV-0031183_48	UniRef90_A0A1C6J8K0	129.0	3.54e-33	N-acetylmuramoyl-L-alanine amidase AmiD	N/A
eggNOG-mapper	UHGV-0031183_48	411470.RUMGNA_02087	124.0	1.53e-30	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0031183_48	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0031183_48	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-0031183_49	phrog_89	43.6	0.0000000000037	Rz-like spanin	lysis
UniRef90	UHGV-0031183_51	UniRef90_UPI00164BB471	71.2	0.0000000000605	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0031183_51	1122991.BAIZ01000014_gene1267	60.5	0.0000000705	D12 class N6 adenine-specific DNA methyltransferase	N/A
COG	UHGV-0031183_51	COG0338	N/A	N/A	DNA-adenine methylase	N/A
PHROG	UHGV-0031183_52	phrog_1157	147.0	7.28675e-44	transposase	integration and excision
UniRef90	UHGV-0031183_52	UniRef90_A0A369XR50	199.0	0	IS21 family transposase	N/A
eggNOG-mapper	UHGV-0031183_52	555079.Toce_0483	176.0	0	COGs COG4584 Transposase and inactivated derivatives	N/A
NCBIFam	UHGV-0031183_52	NF033546.1	N/A	N/A	IS21 family transposase	N/A
COG	UHGV-0031183_52	COG4584	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0031183_52	PF02914,PF02796,NF033546,COG4584	N/A	N/A	N/A	N/A
KOfam	UHGV-0031183_53	K02315	91.9	8.3e-27	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0031183_53	phrog_50	95.1	8.6e-28	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031183_53	UniRef90_G8LVQ0	135.0	1.61e-36	DNA replication protein	N/A
eggNOG-mapper	UHGV-0031183_53	720554.Clocl_1273	136.0	9.6e-38	DNA replication protein	N/A
PADLOC	UHGV-0031183_53	DrmD_00013	69.6	8.9e-20	DrmD	DISARM
Pfam	UHGV-0031183_53	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0031183_53	COG1484	N/A	N/A	DNA replication protein DnaC	N/A